Csa1G088450 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G088450
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	LOB domain-containing protein, putative; contains IPR004883 (Lateral organ boundaries, LOB)
Location	Chr1 : 8327310 .. 8329842 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATAGTCTCATTAATTGCAACAATGGTTCGTCAAGATTCTATCCTTTGTTTCAAGATAAAGTACTCTGATCTCCTCCTGAAAGTAGAATATGTTTCCAGTTGTGGATTGGAAAAAGAATGAATGAATAAATATTCTACAACTTCAAGAAGTGATTTTGATGATGTTGGTTACGTTGTTTTTATCCTATACACTAAAAAAAGGGTACTACAATGAGTACTTTTCTTTTATGGTTCAAATATAAATTTATGTTTTCCATTTTCTTCAATCTCTTAGTCTAGAAAGAGGGGCAGCATTTTTTTTCAATCCCTAGAATTTTCCTACAAATATTCCAAAATAAAGAAGGATGCCTCATAGATTTAAATTTTATAATTTTAATCTTTAACTTCTTCTTTTGGCTTTAATTTTAGGCTTATTTTTTAATTTCTTAACAAACATTATTAATAAGATTTTTAAAGTATACATTGGTATTAATACAAATTATTATTGTTATTTTATTAGGATTGAGAAATATTAAATTAAAATTAACTAAACGAGATTACTTTTTAAAATTGATTATTGAATTTGAGATTATCAAATTTTGAAATGAGAAAGTATATGAATATAGTGAGATCAAATAGATTGGATTTAAACAACCATGGTGATGATATTATAAAGGACAACATCTAAATTTTAGAGATGGATGATTATGATCATGAATAATTCATCCAAAACTATCAAACATTTCTCTTCAATCTCTTCGTTTCTCTTGATCTTTAATTTAAATCTAACTCATTCCTTTTGGTTATTGTCAAGTTGATTTGAGGTTTTAGAATTTGATATATCACAGATTCACCGATTTGATTCCTATTTATTAAACCCTATAGATTTCATGTCAATAATCGTGACACAGTAGGGAGAATTTCAACTTTCAAACTAAGTTTATTATGAAATTTTATTTTATTTTTATACATGAGACAATTAATACAATAATGCACATATTCAAAATTACATTGTTCGTTTGTATTAATGATTAGTAAAAATGAATATCCTTAGGATGTGTTTTTCTCAGGTTCATAACCTAATTGACTTCGTAACTTTAAAGTTTATATATTTAATAGAATATTTAAACTAGAATCATATTTCGTAAGTGAGCGACTAAAATGAATGAATATTTTGGTGTGGAAAATACAAAAACAAAATTGTAACAAACTCTAAATTAAAAAAAGAAAAAGAAAAATGATATTTTGATATAAATTAAAGTTTAATAGAAAATTAATAATTTATGTTATAAATGAAATTAATAAGGAGGCAGAGTGTATAAGTCTACAAAAATGAACTTAAAAGTCCAATTTTAATTTTTATTTCAACTTACGACGTCATCTCTTCTTCTTCACTTCGTCTCGTCTCGTCTCTCTCTATATATTATATTCTTCGTTCTTCTTCACAGCCAAAACCAACTCCATCTCTCTCTCTCTCTACTGACTCTAAAATGGAGTCTACTGACACAAAATCCAGCCCGACTTCAACTCTTCTCCTTTCTCACTCCCCGTCGCCGTCTCCGTCTCCTTCACCGCCGCCGACTGTTCAGGCCCACGTGGTGGTCACTCCATGTGCGGCCTGCAAGATTCTGCGTCGGAGATGCACACAGAAATGCGTATTGGCGCCTTATTTTCCTCCCTCTGATCCTCTTAAGTTCACCATTGCTCACCGTATCTTTGGCGCTAGCAACATCATCAAATTACTTTTAGTACTTCCTTGATCCCTAATTTTCTGTTTCTCTCTTTCAAATTTCGCTGTCTTTTCTTCTTGTTTCTATGTTTGAAAATTATGAATTCCGTTATTGAAATTGAAAATTGACCTTAACAACTTAACGAAAAACCATCGTTCTGGCTGGAATGAAGTTTGACGAATTCACAATCCTATTATGTTTGATTGCTTTTGCTTGATGATAATTTGGAGCTATTACGTTCATACATCATGAAAATTGGTAGAATCAAATGAAAACACCCAACTGTTCGATTAATGCCCTCGAACAATCCATCATATTGAATGTTTTATTGAATTCTTCAGGATCTTCCTGATTCACAAAGGGCGGATGCAGTGAGTAGTTTAGTATATGAAGCAAGTGCAAGAATTAGAGATCCAGTTTATGGATGTGCAGGGGCCATTTGTCAGCTTCAAAAACAGATAAATGAATTGCAAGCAGAGCTAGCCAAGACACAAGCTGAGCTTGTCAATATCCATTGCCACCAAACCAATTTGGTGGCTCTGATTTGCAAGGAATTAGCCCAAACGCCGCCACCGATGTCATCATCATCGCTACTGCCGGAGCACCGCTCACTTGACAACAGTTTCAACATCGTCGCCACTCCTCAAAGCTACCAAGGGTACACATCTTTGTTTGGGGATAGCAATATTTGGGACCCTCTTTGGACATGAAAAAGAAAAACTTGAGATTTCTAAGACAAAGGTTTTGGGAAGTCAAAGTTGGATTGGTTTTGAATAGAATATAGGAAAGTTAAGTAGTTGAATATTGGGTAATATTAGG

mRNA sequence

ATGGCGATAGTCTCATTAATTGCAACAATGAAATGCGTATTGGCGCCTTATTTTCCTCCCTCTGATCCTCTTAAGTTCACCATTGCTCACCGTATCTTTGGCGCTAGCAACATCATCAAATTACTTTTAGATCTTCCTGATTCACAAAGGGCGGATGCAGTGAGTAGTTTAGTATATGAAGCAAGTGCAAGAATTAGAGATCCAGTTTATGGATGTGCAGGGGCCATTTGTCAGCTTCAAAAACAGATAAATGAATTGCAAGCAGAGCTAGCCAAGACACAAGCTGAGCTTGTCAATATCCATTGCCACCAAACCAATTTGGTGGCTCTGATTTGCAAGGAATTAGCCCAAACGCCGCCACCGATGTCATCATCATCGCTACTGCCGGAGCACCGCTCACTTGACAACAGTTTCAACATCGTCGCCACTCCTCAAAGCTACCAAGGGTACACATCTTTGTTTGGGGATAGCAATATTTGGGACCCTCTTTGGACATGA

Coding sequence (CDS)

ATGGCGATAGTCTCATTAATTGCAACAATGAAATGCGTATTGGCGCCTTATTTTCCTCCCTCTGATCCTCTTAAGTTCACCATTGCTCACCGTATCTTTGGCGCTAGCAACATCATCAAATTACTTTTAGATCTTCCTGATTCACAAAGGGCGGATGCAGTGAGTAGTTTAGTATATGAAGCAAGTGCAAGAATTAGAGATCCAGTTTATGGATGTGCAGGGGCCATTTGTCAGCTTCAAAAACAGATAAATGAATTGCAAGCAGAGCTAGCCAAGACACAAGCTGAGCTTGTCAATATCCATTGCCACCAAACCAATTTGGTGGCTCTGATTTGCAAGGAATTAGCCCAAACGCCGCCACCGATGTCATCATCATCGCTACTGCCGGAGCACCGCTCACTTGACAACAGTTTCAACATCGTCGCCACTCCTCAAAGCTACCAAGGGTACACATCTTTGTTTGGGGATAGCAATATTTGGGACCCTCTTTGGACATGA

Protein sequence

MAIVSLIATMKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLLPEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT*

Homology

[Close]

BLAST of Csa1G088450 vs. Swiss-Prot
Match: LBD11_ARATH (LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2)

HSP 1 Score: 161.0 bits (406), Expect = 1.1e-38
Identity = 83/164 (50.61%), Postives = 105/164 (64.02%), Query Frame = 1


Query: 11  KCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVY 70
           KCVLAPYFPP+DP KFTIAHR+FGASNIIK L +LP+SQR DAV+S+VYEA AR+RDPVY
Sbjct: 69  KCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVY 128

Query: 71  GCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICK-ELAQTPPPMSSSSLLP 130
           GCAGAI  LQ+Q++ELQA+LAKTQ ELV +   +++L+ LI   E  +          + 
Sbjct: 129 GCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQRSSLLELIYNMEQTKLSVQEQGQQKMS 188

Query: 131 EHRSLDNSFNIVATPQSYQGYTSLFGDSN--------IWDPLWT 166
              S ++    +++P           D+N         WDPLWT
Sbjct: 189 FESSFESGDEFISSPDEESNDLGFLEDNNNNNNSSMSWWDPLWT 232

[Close]

BLAST of Csa1G088450 vs. Swiss-Prot
Match: LBD1_ARATH (LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.1e-37
Identity = 85/155 (54.84%), Postives = 103/155 (66.45%), Query Frame = 1


Query: 11  KCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVY 70
           +CVLAPYFPP+DP KFTIAHR+FGASNIIK L +LP+SQR DAV+S+VYEA ARIRDPVY
Sbjct: 47  RCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAEARIRDPVY 106

Query: 71  GCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLLPE 130
           GCAGAI  LQ+Q++ELQA+LAK Q E+VN+   ++NL+ LI     Q      + S    
Sbjct: 107 GCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQRSNLLELIYNMDQQQKQEQDNMSF--- 166

Query: 131 HRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 166
             S D  F      +S    + L+     WDPLWT
Sbjct: 167 -ESNDLGF---LEDKSNTNSSMLW-----WDPLWT 189

[Close]

BLAST of Csa1G088450 vs. Swiss-Prot
Match: LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2)

HSP 1 Score: 123.6 bits (309), Expect = 2.0e-27
Identity = 56/89 (62.92%), Postives = 70/89 (78.65%), Query Frame = 1


Query: 12  CVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYG 71
           C+ APYFPP DP KF I H++FGASN+ K+L +LP  QRADAV+SLV+EA+AR+RDPVYG
Sbjct: 23  CIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVNSLVFEANARVRDPVYG 82

Query: 72  CAGAICQLQKQINELQAELAKTQAELVNI 101
           C GAI  LQ Q+++LQ +LA  QAE++ I
Sbjct: 83  CVGAISYLQNQVSQLQMQLAVAQAEILCI 111

[Close]

BLAST of Csa1G088450 vs. Swiss-Prot
Match: LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.4e-27
Identity = 63/121 (52.07%), Postives = 81/121 (66.94%), Query Frame = 1


Query: 12  CVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYG 71
           CV +PYFP  +P KF   HR+FGASN+ K+L +LP  QR DAVSS+VYEA+AR+RDPVYG
Sbjct: 28  CVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVSSMVYEANARVRDPVYG 87

Query: 72  CAGAICQLQKQINELQAELAKTQAELVNIHCHQ-TNLVAL-ICKELAQTPPPMSSSSLLP 131
           C GAI  LQ+QI+ LQA+LA  QAE+V++   Q TN     +C +   +    SS  + P
Sbjct: 88  CVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQSTNFPGHGLCPDSPSSSGSPSSKQVSP 147

[Close]

BLAST of Csa1G088450 vs. Swiss-Prot
Match: LBD3_ARATH (LOB domain-containing protein 3 OS=Arabidopsis thaliana GN=LBD3 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.1e-25
Identity = 56/116 (48.28%), Postives = 75/116 (64.66%), Query Frame = 1


Query: 12  CVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYG 71
           CV APYFP  +P KF I H+IFGASN+ K+L +L ++ R+DAV S+VYEA+ARI+DPVYG
Sbjct: 30  CVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHRSDAVDSMVYEANARIQDPVYG 89

Query: 72  CAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSL 128
           C G I  L +Q+  LQ +LA  QAEL++I              +   PPP ++S++
Sbjct: 90  CVGTISSLHRQLETLQTQLAFAQAELIHIR---------TLHRIHTKPPPYTASTV 136

[Close]

BLAST of Csa1G088450 vs. TrEMBL
Match: A0A0A0LS55_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G088450 PE=4 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 1.4e-88
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 1


Query: 1   MAIVSLIATMKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYE 60
           MAIVSLIATMKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYE
Sbjct: 1   MAIVSLIATMKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYE 60

Query: 61  ASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPP 120
           ASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPP
Sbjct: 61  ASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPP 120

Query: 121 PMSSSSLLPEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 166
           PMSSSSLLPEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT
Sbjct: 121 PMSSSSLLPEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 165

[Close]

BLAST of Csa1G088450 vs. TrEMBL
Match: A0A067LHN9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05582 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 4.0e-51
Identity = 103/157 (65.61%), Postives = 122/157 (77.71%), Query Frame = 1


Query: 11  KCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVY 70
           KCVLAPYFPP++P KFTIAHR+FGASNIIK L +LP+SQRADAVSS+VYEASARIRDPVY
Sbjct: 60  KCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVY 119

Query: 71  GCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICK--ELAQTPPPMSSSSLL 130
           GCAGAIC LQKQI+ELQA+LAK QAELVN+ C Q NLVA++C   E+AQ+P   S  S+ 
Sbjct: 120 GCAGAICHLQKQISELQAQLAKAQAELVNMQCQQANLVAILCNCMEMAQSPQQSSEQSV- 179

Query: 131 PEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 166
                     N ++TPQSYQ       +SN+W+PLWT
Sbjct: 180 ---------DNFISTPQSYQSNPCFIDESNLWEPLWT 206

[Close]

BLAST of Csa1G088450 vs. TrEMBL
Match: B9SK21_RICCO (LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_1399160 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 7.5e-50
Identity = 102/158 (64.56%), Postives = 121/158 (76.58%), Query Frame = 1


Query: 11  KCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVY 70
           KCVLAPYFPP++P KFTIAHR+FGASNIIK L +LP+SQRADAVSS+VYEASARIRDPVY
Sbjct: 54  KCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVY 113

Query: 71  GCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLLPE 130
           GCAGAICQLQKQ+NELQA+LAK QAE+VN+ C Q NL+ALI  E+AQ+P   S  S+   
Sbjct: 114 GCAGAICQLQKQVNELQAQLAKAQAEVVNMQCQQANLMALIYMEMAQSPQQSSEQSI--- 173

Query: 131 HRSLDNSFNIVATPQSYQGYTSLFGDSNI---WDPLWT 166
                   + + TPQSYQ       +SN+   W+PLWT
Sbjct: 174 -------DDFITTPQSYQSNPCFLDESNLGTMWEPLWT 201

[Close]

BLAST of Csa1G088450 vs. TrEMBL
Match: A0A061GTD1_THECC (LOB domain-containing protein 1 OS=Theobroma cacao GN=TCM_041094 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.7e-49
Identity = 101/159 (63.52%), Postives = 121/159 (76.10%), Query Frame = 1


Query: 11  KCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVY 70
           KCVLAPYFPP++P KFTIAHR+FGASNIIK L +LP+SQRADAVSS+VYEASARIRDPVY
Sbjct: 69  KCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVY 128

Query: 71  GCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLLPE 130
           GCAGAICQLQKQ+NELQA+LAK QAE+VN+   Q NLVAL+C E+AQ+P P S  S+   
Sbjct: 129 GCAGAICQLQKQVNELQAQLAKAQAEVVNMQLQQANLVALLCVEMAQSPQPNSQQSV--- 188

Query: 131 HRSLDNSFNIVATPQSYQGYTSLFGDSN----IWDPLWT 166
                     +++P SYQ       D+N    +W+PLWT
Sbjct: 189 -------DTFISSPPSYQSNPGFLEDNNNLGSLWEPLWT 217

[Close]

BLAST of Csa1G088450 vs. TrEMBL
Match: D7SKT6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g03330 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 2.9e-49
Identity = 101/158 (63.92%), Postives = 119/158 (75.32%), Query Frame = 1


Query: 11  KCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVY 70
           KCVLAPYFPP+DP KFT AHR+FGASNIIK L +LP+ QRADAVSS+VYEA ARIRDPVY
Sbjct: 54  KCVLAPYFPPTDPAKFTTAHRVFGASNIIKFLQELPEFQRADAVSSMVYEAQARIRDPVY 113

Query: 71  GCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLLPE 130
           GCAGAICQLQKQ++ELQA+LAKTQAELVN+ C Q NLV +IC E+  +  P  SS     
Sbjct: 114 GCAGAICQLQKQLDELQAQLAKTQAELVNMQCQQANLVTMICMEMEMSQSPQPSS----- 173

Query: 131 HRSLDNSFNIVATPQSYQGYTSLFGDSNI---WDPLWT 166
               + S + + +PQSYQ  +    DSNI   W+PLWT
Sbjct: 174 ----EESLDSLISPQSYQSNSFFLDDSNIGATWEPLWT 202

[Close]

BLAST of Csa1G088450 vs. TAIR10
Match: AT2G28500.1 (AT2G28500.1 LOB domain-containing protein 11)

HSP 1 Score: 161.0 bits (406), Expect = 6.3e-40
Identity = 83/164 (50.61%), Postives = 105/164 (64.02%), Query Frame = 1


Query: 11  KCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVY 70
           KCVLAPYFPP+DP KFTIAHR+FGASNIIK L +LP+SQR DAV+S+VYEA AR+RDPVY
Sbjct: 69  KCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVY 128

Query: 71  GCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICK-ELAQTPPPMSSSSLLP 130
           GCAGAI  LQ+Q++ELQA+LAKTQ ELV +   +++L+ LI   E  +          + 
Sbjct: 129 GCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQRSSLLELIYNMEQTKLSVQEQGQQKMS 188

Query: 131 EHRSLDNSFNIVATPQSYQGYTSLFGDSN--------IWDPLWT 166
              S ++    +++P           D+N         WDPLWT
Sbjct: 189 FESSFESGDEFISSPDEESNDLGFLEDNNNNNNSSMSWWDPLWT 232

[Close]

BLAST of Csa1G088450 vs. TAIR10
Match: AT1G07900.1 (AT1G07900.1 LOB domain-containing protein 1)

HSP 1 Score: 156.8 bits (395), Expect = 1.2e-38
Identity = 85/155 (54.84%), Postives = 103/155 (66.45%), Query Frame = 1


Query: 11  KCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVY 70
           +CVLAPYFPP+DP KFTIAHR+FGASNIIK L +LP+SQR DAV+S+VYEA ARIRDPVY
Sbjct: 47  RCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAEARIRDPVY 106

Query: 71  GCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLLPE 130
           GCAGAI  LQ+Q++ELQA+LAK Q E+VN+   ++NL+ LI     Q      + S    
Sbjct: 107 GCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQRSNLLELIYNMDQQQKQEQDNMSF--- 166

Query: 131 HRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 166
             S D  F      +S    + L+     WDPLWT
Sbjct: 167 -ESNDLGF---LEDKSNTNSSMLW-----WDPLWT 189

[Close]

BLAST of Csa1G088450 vs. TAIR10
Match: AT2G30130.1 (AT2G30130.1 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 123.6 bits (309), Expect = 1.1e-28
Identity = 56/89 (62.92%), Postives = 70/89 (78.65%), Query Frame = 1


Query: 12  CVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYG 71
           C+ APYFPP DP KF I H++FGASN+ K+L +LP  QRADAV+SLV+EA+AR+RDPVYG
Sbjct: 23  CIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVNSLVFEANARVRDPVYG 82

Query: 72  CAGAICQLQKQINELQAELAKTQAELVNI 101
           C GAI  LQ Q+++LQ +LA  QAE++ I
Sbjct: 83  CVGAISYLQNQVSQLQMQLAVAQAEILCI 111

[Close]

BLAST of Csa1G088450 vs. TAIR10
Match: AT1G31320.1 (AT1G31320.1 LOB domain-containing protein 4)

HSP 1 Score: 122.5 bits (306), Expect = 2.5e-28
Identity = 63/121 (52.07%), Postives = 81/121 (66.94%), Query Frame = 1


Query: 12  CVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYG 71
           CV +PYFP  +P KF   HR+FGASN+ K+L +LP  QR DAVSS+VYEA+AR+RDPVYG
Sbjct: 28  CVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVSSMVYEANARVRDPVYG 87

Query: 72  CAGAICQLQKQINELQAELAKTQAELVNIHCHQ-TNLVAL-ICKELAQTPPPMSSSSLLP 131
           C GAI  LQ+QI+ LQA+LA  QAE+V++   Q TN     +C +   +    SS  + P
Sbjct: 88  CVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQSTNFPGHGLCPDSPSSSGSPSSKQVSP 147

[Close]

BLAST of Csa1G088450 vs. TAIR10
Match: AT1G16530.1 (AT1G16530.1 ASYMMETRIC LEAVES 2-like 9)

HSP 1 Score: 115.9 bits (289), Expect = 2.3e-26
Identity = 56/116 (48.28%), Postives = 75/116 (64.66%), Query Frame = 1


Query: 12  CVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYG 71
           CV APYFP  +P KF I H+IFGASN+ K+L +L ++ R+DAV S+VYEA+ARI+DPVYG
Sbjct: 30  CVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHRSDAVDSMVYEANARIQDPVYG 89

Query: 72  CAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSL 128
           C G I  L +Q+  LQ +LA  QAEL++I              +   PPP ++S++
Sbjct: 90  CVGTISSLHRQLETLQTQLAFAQAELIHIR---------TLHRIHTKPPPYTASTV 136

[Close]

BLAST of Csa1G088450 vs. NCBI nr
Match: gi|700209659|gb|KGN64755.1| (hypothetical protein Csa_1G088450 [Cucumis sativus])

HSP 1 Score: 333.6 bits (854), Expect = 2.0e-88
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 1


Query: 1   MAIVSLIATMKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYE 60
           MAIVSLIATMKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYE
Sbjct: 1   MAIVSLIATMKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYE 60

Query: 61  ASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPP 120
           ASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPP
Sbjct: 61  ASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPP 120

Query: 121 PMSSSSLLPEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 166
           PMSSSSLLPEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT
Sbjct: 121 PMSSSSLLPEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 165

[Close]

BLAST of Csa1G088450 vs. NCBI nr
Match: gi|449459130|ref|XP_004147299.1| (PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus])

HSP 1 Score: 318.9 bits (816), Expect = 5.1e-84
Identity = 156/157 (99.36%), Postives = 156/157 (99.36%), Query Frame = 1


Query: 9   TMKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDP 68
           T KCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDP
Sbjct: 52  TQKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDP 111

Query: 69  VYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLL 128
           VYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLL
Sbjct: 112 VYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLL 171

Query: 129 PEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 166
           PEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT
Sbjct: 172 PEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 208

[Close]

BLAST of Csa1G088450 vs. NCBI nr
Match: gi|659072131|ref|XP_008463550.1| (PREDICTED: LOB domain-containing protein 1-like [Cucumis melo])

HSP 1 Score: 303.1 bits (775), Expect = 2.9e-79
Identity = 150/155 (96.77%), Postives = 152/155 (98.06%), Query Frame = 1


Query: 11  KCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVY 70
           KCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVY
Sbjct: 51  KCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVY 110

Query: 71  GCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLLPE 130
           GCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSS SLLP+
Sbjct: 111 GCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSLSLLPD 170

Query: 131 HRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 166
           HRSLDN+FNI ATPQSYQGYTSLF DSNIWDPLWT
Sbjct: 171 HRSLDNNFNI-ATPQSYQGYTSLFEDSNIWDPLWT 204

[Close]

BLAST of Csa1G088450 vs. NCBI nr
Match: gi|802551592|ref|XP_012064881.1| (PREDICTED: LOB domain-containing protein 11-like [Jatropha curcas])

HSP 1 Score: 209.1 bits (531), Expect = 5.7e-51
Identity = 103/157 (65.61%), Postives = 122/157 (77.71%), Query Frame = 1


Query: 11  KCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVY 70
           KCVLAPYFPP++P KFTIAHR+FGASNIIK L +LP+SQRADAVSS+VYEASARIRDPVY
Sbjct: 60  KCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVY 119

Query: 71  GCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICK--ELAQTPPPMSSSSLL 130
           GCAGAIC LQKQI+ELQA+LAK QAELVN+ C Q NLVA++C   E+AQ+P   S  S+ 
Sbjct: 120 GCAGAICHLQKQISELQAQLAKAQAELVNMQCQQANLVAILCNCMEMAQSPQQSSEQSV- 179

Query: 131 PEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 166
                     N ++TPQSYQ       +SN+W+PLWT
Sbjct: 180 ---------DNFISTPQSYQSNPCFIDESNLWEPLWT 206

[Close]

BLAST of Csa1G088450 vs. NCBI nr
Match: gi|255570775|ref|XP_002526340.1| (PREDICTED: LOB domain-containing protein 1 [Ricinus communis])

HSP 1 Score: 204.9 bits (520), Expect = 1.1e-49
Identity = 102/158 (64.56%), Postives = 121/158 (76.58%), Query Frame = 1


Query: 11  KCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVY 70
           KCVLAPYFPP++P KFTIAHR+FGASNIIK L +LP+SQRADAVSS+VYEASARIRDPVY
Sbjct: 54  KCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVY 113

Query: 71  GCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLLPE 130
           GCAGAICQLQKQ+NELQA+LAK QAE+VN+ C Q NL+ALI  E+AQ+P   S  S+   
Sbjct: 114 GCAGAICQLQKQVNELQAQLAKAQAEVVNMQCQQANLMALIYMEMAQSPQQSSEQSI--- 173

Query: 131 HRSLDNSFNIVATPQSYQGYTSLFGDSNI---WDPLWT 166
                   + + TPQSYQ       +SN+   W+PLWT
Sbjct: 174 -------DDFITTPQSYQSNPCFLDESNLGTMWEPLWT 201

The following BLAST results are available for this feature:

BLAST of Csa1G088450 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LBD11_ARATH	1.1e-38	50.61	LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2	[more]
LBD1_ARATH	2.1e-37	54.84	LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1	[more]
LBD12_ARATH	2.0e-27	62.92	LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2	[more]
LBD4_ARATH	4.4e-27	52.07	LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1	[more]
LBD3_ARATH	4.1e-25	48.28	LOB domain-containing protein 3 OS=Arabidopsis thaliana GN=LBD3 PE=2 SV=1	[more]

BLAST of Csa1G088450 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LS55_CUCSA	1.4e-88	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G088450 PE=4 SV=1	[more]
A0A067LHN9_JATCU	4.0e-51	65.61	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05582 PE=4 SV=1	[more]
B9SK21_RICCO	7.5e-50	64.56	LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_1399160 PE=4...	[more]
A0A061GTD1_THECC	1.7e-49	63.52	LOB domain-containing protein 1 OS=Theobroma cacao GN=TCM_041094 PE=4 SV=1	[more]
D7SKT6_VITVI	2.9e-49	63.92	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g03330 PE=4 SV=...	[more]

BLAST of Csa1G088450 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G28500.1	6.3e-40	50.61	LOB domain-containing protein 11	[more]
AT1G07900.1	1.2e-38	54.84	LOB domain-containing protein 1	[more]
AT2G30130.1	1.1e-28	62.92	Lateral organ boundaries (LOB) domain family protein	[more]
AT1G31320.1	2.5e-28	52.07	LOB domain-containing protein 4	[more]
AT1G16530.1	2.3e-26	48.28	ASYMMETRIC LEAVES 2-like 9	[more]

BLAST of Csa1G088450 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209659\|gb\|KGN64755.1\|	2.0e-88	100.00	hypothetical protein Csa_1G088450 [Cucumis sativus]	[more]
gi\|449459130\|ref\|XP_004147299.1\|	5.1e-84	99.36	PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus]	[more]
gi\|659072131\|ref\|XP_008463550.1\|	2.9e-79	96.77	PREDICTED: LOB domain-containing protein 1-like [Cucumis melo]	[more]
gi\|802551592\|ref\|XP_012064881.1\|	5.7e-51	65.61	PREDICTED: LOB domain-containing protein 11-like [Jatropha curcas]	[more]
gi\|255570775\|ref\|XP_002526340.1\|	1.1e-49	64.56	PREDICTED: LOB domain-containing protein 1 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016874	ligase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G088450.1	Csa1G088450.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	DUF260	coord: 10..94 score: 6.5
IPR004883	Lateral organ boundaries, LOB	PROFILE	PS50891	LOB	coord: 1..97 score: 19
None	No IPR available	unknown	Coil	Coil	coord: 76..103 scor
None	No IPR available	PANTHER	PTHR31301	FAMILY NOT NAMED	coord: 11..164 score: 1.4
None	No IPR available	PANTHER	PTHR31301:SF6	SUBFAMILY NOT NAMED	coord: 11..164 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G088450	Cucurbita moschata (Rifu)	cmocuB188
Csa1G088450	Cucurbita moschata (Rifu)	cmocuB421
Csa1G088450	Cucurbita moschata (Rifu)	cmocuB570
Csa1G088450	Melon (DHL92) v3.5.1	cumeB012
Csa1G088450	Melon (DHL92) v3.5.1	cumeB015
Csa1G088450	Watermelon (Charleston Gray)	cuwcgB033
Csa1G088450	Watermelon (Charleston Gray)	cuwcgB037
Csa1G088450	Watermelon (97103) v1	cuwmB010
Csa1G088450	Watermelon (97103) v1	cuwmB070
Csa1G088450	Cucurbita pepo (Zucchini)	cpecuB516
Csa1G088450	Cucurbita pepo (Zucchini)	cpecuB528
Csa1G088450	Bottle gourd (USVL1VR-Ls)	culsiB002
Csa1G088450	Bottle gourd (USVL1VR-Ls)	culsiB024
Csa1G088450	Cucumber (Gy14) v2	cgybcuB001
Csa1G088450	Melon (DHL92) v3.6.1	cumedB008
Csa1G088450	Melon (DHL92) v3.6.1	cumedB010
Csa1G088450	Silver-seed gourd	carcuB0472
Csa1G088450	Watermelon (97103) v2	cuwmbB028
Csa1G088450	Watermelon (97103) v2	cuwmbB034
Csa1G088450	Wax gourd	cuwgoB019
Csa1G088450	Wax gourd	cuwgoB049
Csa1G088450	Cucumber (Chinese Long) v2	cucuB041
Csa1G088450	Cucumber (Gy14) v1	cgycuB314
Csa1G088450	Cucurbita maxima (Rimu)	cmacuB203
Csa1G088450	Cucurbita maxima (Rimu)	cmacuB431
Csa1G088450	Cucurbita maxima (Rimu)	cmacuB581