Csa1G087440 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G087440
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	RNA ligase isoform
Location	Chr1 : 8287633 .. 8289267 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGCGTTGCAGAGAATTTTCTGTGCTAAAACTCTTCCTCACCCTCCTTTTTCTTCGTCTTACAGGGTCTTCCCCTTCATTTCCCACCCTCTTTCCCACTATATCTTACCGCGCTCTCTCACTCTCGCACCTTTAACTTCCTCCCCTCTTCCCATTTCTTGTGATTCTCGATTCGTCATGCCTTACAATCAGGTGCCCATTATTTTGTTTGATGAATTTGGCTCTAAATTTACGTGCCTGTGATGAGATATCCATTTTTGTATCTGGGTTTCTCAATTTGTTTTCATTAATGGTTTTGATGTTCGTAACTTTCTCGTTTTGAATGCGGTAGTCTGTTTTCTGTTGGTGTTGAGGATGGACGGGGTTTGATTTTGTCATTTCTTATCTATTCTCAACGTTTCATGATTAATGTTTTTGCAATGCTAGCATGTAAAAAGGATGCGGCGATGGTAATTTGTTTTTTTACACGCTTTCTGTATATGAAACACTTCAATTCTTTTGCTTATGTCGCAAGGCATCGATAACATGTAATTAGAATTTTATCTTCGGGACTATATATGTTGAGTTTGATCTTGATTTGCAGCGAAGGGGTAGCCGTGGAGAACAGAAGTGGAAAGAGAAGGCGAAGGCTGACAGAAATTCTACGGAGTCAGAGGCTGCTGCGGAAGTTGTTACTAATGCACTCGGTAAATTGAGGGTCACTGAAAGTGATCAACCTCATGTTCTTACTTCTAGTGCTCAGTTTGGAAATGCCCAGCTGACAAATCAGGCCACCCCTGGACTTGCTCATAGAGCAATTTGGAAACCAAAAGCGTATGGAACAACCAGTGGAGCTGCAGTGATTGAAGGTGAAAAAGCACCCACCAACGAAACGTCAACTGAAAACAAAGGGAGTAATGCTGGAGTGGCAGCGCAGGATGGCGTTGTTAGCCTGAGTCAATTATTCAAGAGCAATCAGATTGAAAAATTTACTGTGGATAACTCCACATACACACAGGCACAAATAAGAGCAACGTTCTACCCTAAATTTGAGAACGAGAAGTCGGATCAGGAGGTATCTCTTTATTCTTTGTGTTTCATTTGGAAGTTTGATGGAACCTGTAGCTTATGTGAATAGTAAGTATTATTGATATTAGATTCAGTAATGAATCTTGGTTACAAACTCTAATCCAATCTCAAGAAGTAAGAACTCTCTTCTGCTAACCTATCTCTCCAGGTAGAACAGAAACTTTTCTTTCAACCAAACTCTAACTGCCTTCCTGCCCTCTCCTTTCCACTATTAATACTTTCTAACCACTCTACTCTCACGTACCTCCACTCCTTCATTCGCACTTGTCAATTCTTTTTTCCTCTCCTACTATATTGGTGTATGATAGGAGGTCTATCAAAGTTACACTTGGACTCTTGATTTGCTTCATTACACTGAATTTTTTACTTTTAGCTTATTTGTTAGCTTGACATTATTCTACCTCGAAGATGTTTTTCCCATTCACCATGTCCTTGGCTTGTTTGGGTATGTGTTTCTAGGTGCATGCTTGCAGTTGTGTACTTGTTTTTGAATCTCTCAACTATCATCTTTGGGTCATTGGGCAAATTTTGCTGCAGCTTTTTGGGTCAATTGTGTTTCTTTAA

mRNA sequence

ATGTCGGCGTTGCAGAGAATTTTCTGTGCTAAAACTCTTCCTCACCCTCCTTTTTCTTCGTCTTACAGGGTCTTCCCCTTCATTTCCCACCCTCTTTCCCACTATATCTTACCGCGCTCTCTCACTCTCGCACCTTTAACTTCCTCCCCTCTTCCCATTTCTTGTGATTCTCGATTCGTCATGCCTTACAATCAGCGAAGGGGTAGCCGTGGAGAACAGAAGTGGAAAGAGAAGGCGAAGGCTGACAGAAATTCTACGGAGTCAGAGGCTGCTGCGGAAGTTGTTACTAATGCACTCGGTAAATTGAGGGTCACTGAAAGTGATCAACCTCATGTTCTTACTTCTAGTGCTCAGTTTGGAAATGCCCAGCTGACAAATCAGGCCACCCCTGGACTTGCTCATAGAGCAATTTGGAAACCAAAAGCGTATGGAACAACCAGTGGAGCTGCAGTGATTGAAGGTGAAAAAGCACCCACCAACGAAACGTCAACTGAAAACAAAGGGAGTAATGCTGGAGTGGCAGCGCAGGATGGCGTTGTTAGCCTGAGTCAATTATTCAAGAGCAATCAGATTGAAAAATTTACTGTGGATAACTCCACATACACACAGGCACAAATAAGAGCAACGTTCTACCCTAAATTTGAGAACGAGAAGTCGGATCAGGAGGTGCATGCTTGCAGTTGTGTACTTGTTTTTGAATCTCTCAACTATCATCTTTGGGTCATTGGGCAAATTTTGCTGCAGCTTTTTGGGTCAATTGTGTTTCTTTAA

Coding sequence (CDS)

ATGTCGGCGTTGCAGAGAATTTTCTGTGCTAAAACTCTTCCTCACCCTCCTTTTTCTTCGTCTTACAGGGTCTTCCCCTTCATTTCCCACCCTCTTTCCCACTATATCTTACCGCGCTCTCTCACTCTCGCACCTTTAACTTCCTCCCCTCTTCCCATTTCTTGTGATTCTCGATTCGTCATGCCTTACAATCAGCGAAGGGGTAGCCGTGGAGAACAGAAGTGGAAAGAGAAGGCGAAGGCTGACAGAAATTCTACGGAGTCAGAGGCTGCTGCGGAAGTTGTTACTAATGCACTCGGTAAATTGAGGGTCACTGAAAGTGATCAACCTCATGTTCTTACTTCTAGTGCTCAGTTTGGAAATGCCCAGCTGACAAATCAGGCCACCCCTGGACTTGCTCATAGAGCAATTTGGAAACCAAAAGCGTATGGAACAACCAGTGGAGCTGCAGTGATTGAAGGTGAAAAAGCACCCACCAACGAAACGTCAACTGAAAACAAAGGGAGTAATGCTGGAGTGGCAGCGCAGGATGGCGTTGTTAGCCTGAGTCAATTATTCAAGAGCAATCAGATTGAAAAATTTACTGTGGATAACTCCACATACACACAGGCACAAATAAGAGCAACGTTCTACCCTAAATTTGAGAACGAGAAGTCGGATCAGGAGGTGCATGCTTGCAGTTGTGTACTTGTTTTTGAATCTCTCAACTATCATCTTTGGGTCATTGGGCAAATTTTGCTGCAGCTTTTTGGGTCAATTGTGTTTCTTTAA

Protein sequence

MSALQRIFCAKTLPHPPFSSSYRVFPFISHPLSHYILPRSLTLAPLTSSPLPISCDSRFVMPYNQRRGSRGEQKWKEKAKADRNSTESEAAAEVVTNALGKLRVTESDQPHVLTSSAQFGNAQLTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKAPTNETSTENKGSNAGVAAQDGVVSLSQLFKSNQIEKFTVDNSTYTQAQIRATFYPKFENEKSDQEVHACSCVLVFESLNYHLWVIGQILLQLFGSIVFL*

Homology

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BLAST of Csa1G087440 vs. TrEMBL
Match: A0A0A0LVA8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G087440 PE=4 SV=1)

HSP 1 Score: 513.8 bits (1322), Expect = 1.2e-142
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 1


Query: 1   MSALQRIFCAKTLPHPPFSSSYRVFPFISHPLSHYILPRSLTLAPLTSSPLPISCDSRFV 60
           MSALQRIFCAKTLPHPPFSSSYRVFPFISHPLSHYILPRSLTLAPLTSSPLPISCDSRFV
Sbjct: 1   MSALQRIFCAKTLPHPPFSSSYRVFPFISHPLSHYILPRSLTLAPLTSSPLPISCDSRFV 60

Query: 61  MPYNQRRGSRGEQKWKEKAKADRNSTESEAAAEVVTNALGKLRVTESDQPHVLTSSAQFG 120
           MPYNQRRGSRGEQKWKEKAKADRNSTESEAAAEVVTNALGKLRVTESDQPHVLTSSAQFG
Sbjct: 61  MPYNQRRGSRGEQKWKEKAKADRNSTESEAAAEVVTNALGKLRVTESDQPHVLTSSAQFG 120

Query: 121 NAQLTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKAPTNETSTENKGSNAGVAAQDGVV 180
           NAQLTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKAPTNETSTENKGSNAGVAAQDGVV
Sbjct: 121 NAQLTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKAPTNETSTENKGSNAGVAAQDGVV 180

Query: 181 SLSQLFKSNQIEKFTVDNSTYTQAQIRATFYPKFENEKSDQEVHACSCVLVFESLNYHLW 240
           SLSQLFKSNQIEKFTVDNSTYTQAQIRATFYPKFENEKSDQEVHACSCVLVFESLNYHLW
Sbjct: 181 SLSQLFKSNQIEKFTVDNSTYTQAQIRATFYPKFENEKSDQEVHACSCVLVFESLNYHLW 240

Query: 241 VIGQILLQLFGSIVFL 257
           VIGQILLQLFGSIVFL
Sbjct: 241 VIGQILLQLFGSIVFL 256

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BLAST of Csa1G087440 vs. TrEMBL
Match: V4SLE1_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100277021mg PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.9e-36
Identity = 105/230 (45.65%), Postives = 140/230 (60.87%), Query Frame = 1


Query: 1   MSALQRI-FCAKTLPHPPFSSSYRVFPFISHPLSHYI-LPRSLTLAPLTSSPLPISCDSR 60
           MSA QRI FCA TL H   S ++ +    +  L  Y+ L R+ +L   TSS  PI     
Sbjct: 1   MSASQRIVFCAFTLTH---SRAFCLRRSSTSSLRCYLPLARARSLT-FTSSVSPI----- 60

Query: 61  FVMPYNQRRGSRGEQKWKEKAKADRNSTE----SEAAAEVVTNALGKLRVTESDQPHVLT 120
             M YNQRRG   +Q WK+K   D  S+E    S + AE VTN +  L + E+D+   + 
Sbjct: 61  --MSYNQRRGGHSQQLWKQKPVTDMPSSEVEGVSSSGAEAVTNGISGLSIAENDRQSSVP 120

Query: 121 SSAQFGNAQLTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKAPTNETSTENKGSNAGVA 180
           S+  FG+ QL NQ+ P    +AIWKPK+YGT SG    E    P ++T+T  KG+ + + 
Sbjct: 121 STG-FGSFQLPNQS-PTQGQKAIWKPKSYGTVSGQTSAEVGNLPADDTATAIKGNASEMT 180

Query: 181 -AQDGVVSLSQLFKSNQIEKFTVDNSTYTQAQIRATFYPKFENEKSDQEV 224
            AQ G + LS+LF+ N +E FTVDNSTY+ A++RATFYPKFENEKSDQE+
Sbjct: 181 TAQKGRMDLSKLFRGNLLENFTVDNSTYSLAEVRATFYPKFENEKSDQEI 217

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BLAST of Csa1G087440 vs. TrEMBL
Match: A0A067GCQ7_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0460162mg PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.1e-34
Identity = 103/230 (44.78%), Postives = 137/230 (59.57%), Query Frame = 1


Query: 1   MSALQRI-FCAKTLPHPPFSSSYRVFPFISHPLSHYI-LPRSLTLAPLTSSPLPISCDSR 60
           MSA QRI FCA TL H   S ++ +    +  L  Y+ L R+ +L   TSS  PI     
Sbjct: 1   MSASQRIVFCAFTLTH---SRAFCLRRSSTSSLRCYLPLARARSLT-FTSSVSPI----- 60

Query: 61  FVMPYNQRRGSRGEQKWKEKAKADRNSTE----SEAAAEVVTNALGKLRVTESDQPHVLT 120
             M YNQRRG   +Q WK+K   D  S+     S + AE VTN +  L + E+D    + 
Sbjct: 61  --MSYNQRRGGHSQQLWKQKPVTDTPSSAVEGVSSSGAEAVTNGISGLSIAENDGQSSVP 120

Query: 121 SSAQFGNAQLTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKAPTNETSTENKGSNAGVA 180
           S+  FG+ QL NQ+ P    +AIWKPK+YGT SG    E    P ++T+T  KG+ + + 
Sbjct: 121 STG-FGSFQLPNQS-PTQGQKAIWKPKSYGTVSGQTSAEVGNLPADDTATAIKGNASEMT 180

Query: 181 -AQDGVVSLSQLFKSNQIEKFTVDNSTYTQAQIRATFYPKFENEKSDQEV 224
            AQ   + LS+LF+ N +E FTVDNSTY+ A++RATFYPKFENEKSDQE+
Sbjct: 181 TAQKSRMDLSKLFRGNLLENFTVDNSTYSLAEVRATFYPKFENEKSDQEI 217

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BLAST of Csa1G087440 vs. TrEMBL
Match: A5BVB3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015154 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.6e-33
Identity = 101/237 (42.62%), Postives = 127/237 (53.59%), Query Frame = 1


Query: 5    QRIFCAKTLPHPPFSSSYRVFPFISHPLSHYILPRSLTLAPLTSSPLPISCDSRFVMPYN 64
            +RI C    P    SS        S  L  +I  RSL L    S           VM  N
Sbjct: 868  ERILCGFLTPTLSHSSR-------SPKLRAFIFSRSLNLRRSISDS---------VMSSN 927

Query: 65   QRRGSRGEQKWKEKAKADRNSTESEAA---AEVVTNALGKLRVTESDQP--HVLTSSAQF 124
            +RRG+  +QKWK+K+K ++ S   ++A   AE VTN  G L V ES      V   S QF
Sbjct: 928  ERRGTNRKQKWKQKSKPNKKSPSMQSASXAAEAVTNRFGGLAVDESSGQTYQVPDPSVQF 987

Query: 125  GNAQLTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKAPTNETSTENKGSNAGVA-AQDG 184
            G+  L     P     AIWKPK++GT SGA  +E EK P ++T  E  G+ A +A A+  
Sbjct: 988  GSV-LPADLAPVQGQEAIWKPKSFGTVSGARSVEVEKTPIDKTGVEILGNGAEMAVAEKS 1047

Query: 185  VVSLSQLFKSNQIEKFTVDNSTYTQAQIRATFYPKFENEKSDQEVHACSCVLVFESL 236
               LS+LF SN +  FTVDNSTY+ AQIRATFYPKFENEKSDQE+      +V + L
Sbjct: 1048 CAGLSKLFSSNALADFTVDNSTYSLAQIRATFYPKFENEKSDQEIRTRMIEMVSKGL 1087

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BLAST of Csa1G087440 vs. TrEMBL
Match: W9SCB2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_014416 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.4e-31
Identity = 105/268 (39.18%), Postives = 140/268 (52.24%), Query Frame = 1


Query: 1   MSALQRIF-CAKTLP------HPPFSSSYRVFPFISHPLSHYILPRSLTLAPLTS---SP 60
           MSA QRI  C  +LP       P  +   R F F+    S   L RSL+ +   S   SP
Sbjct: 1   MSASQRIILCPLSLPLRFRRSSPSTAFKLRSFLFLRSSPSFVTLVRSLSFSSAISTSLSP 60

Query: 61  LPISC---------DSRFVMPYNQR-------RGSRGEQKWKEKAKADRNSTESEAAA-- 120
             ISC         D   ++ +          +G+R EQKWKE+ K +R ST+ E ++  
Sbjct: 61  SAISCKLWSWEDTTDHVKLVQWEDTTDDVKLGKGARKEQKWKEEPKPNRISTDMEGSSVS 120

Query: 121 --EVVTNALGKLRVTESDQP-HVLTSSAQFGNAQLTNQATPGLAHRAIWKPKAYGTTSGA 180
             E +T  L  L  +E   P +       FG+ QL NQ  P     AIWKP +YGT SGA
Sbjct: 121 VVEDITKRLDGLSFSEKHGPANASVQPILFGSVQLPNQV-PIQGQNAIWKPNSYGTMSGA 180

Query: 181 AVIEGEKAPTNETSTENKGSNAGVAA--QDGVVSLSQLFKSNQIEKFTVDNSTYTQAQIR 236
             ++ E+   ++++  N+G+  G A+  Q     LS+LFK N +E FTVDNST+ QAQIR
Sbjct: 181 TAVQVEETSVDKSAHLNQGTGVGQASTSQKSRFGLSKLFKGNLLESFTVDNSTFAQAQIR 240

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BLAST of Csa1G087440 vs. TAIR10
Match: AT1G07910.1 (AT1G07910.1 RNAligase)

HSP 1 Score: 91.7 bits (226), Expect = 7.3e-19
Identity = 57/157 (36.31%), Postives = 79/157 (50.32%), Query Frame = 1


Query: 79  AKADRNSTESEAAAEVVTNALGKLRVTESDQPHVLTSSAQFGNAQLTNQATPGLAHRAIW 138
           A  +   + +   AE V N  G L + ES+    +  S    N ++ N          +W
Sbjct: 3   APFESGDSSATVVAEAVNNQFGGLSLKESNTNAPVLPSQTTSNHRVQN---------LVW 62

Query: 139 KPKAYGTTSGAAVIEGEKAPTNETSTENKGSNAGVAAQDGVVSLSQLFKSNQIEKFTVDN 198
           KPK+YGT SG++    E   T+  S      +  V      ++LS++F  N +EKF+VD 
Sbjct: 63  KPKSYGTVSGSSSAT-EVGKTSAVSQIGSSGDTKVG-----LNLSKIFGGNLLEKFSVDK 122

Query: 199 STYTQAQIRATFYPKFENEKSDQEVHACSCVLVFESL 236
           STY  AQIRATFYPKFENEK+DQE+      +V + L
Sbjct: 123 STYCHAQIRATFYPKFENEKTDQEIRTRMIEMVSKGL 144

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BLAST of Csa1G087440 vs. NCBI nr
Match: gi|700209656|gb|KGN64752.1| (hypothetical protein Csa_1G087440 [Cucumis sativus])

HSP 1 Score: 513.8 bits (1322), Expect = 1.7e-142
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 1


Query: 1   MSALQRIFCAKTLPHPPFSSSYRVFPFISHPLSHYILPRSLTLAPLTSSPLPISCDSRFV 60
           MSALQRIFCAKTLPHPPFSSSYRVFPFISHPLSHYILPRSLTLAPLTSSPLPISCDSRFV
Sbjct: 1   MSALQRIFCAKTLPHPPFSSSYRVFPFISHPLSHYILPRSLTLAPLTSSPLPISCDSRFV 60

Query: 61  MPYNQRRGSRGEQKWKEKAKADRNSTESEAAAEVVTNALGKLRVTESDQPHVLTSSAQFG 120
           MPYNQRRGSRGEQKWKEKAKADRNSTESEAAAEVVTNALGKLRVTESDQPHVLTSSAQFG
Sbjct: 61  MPYNQRRGSRGEQKWKEKAKADRNSTESEAAAEVVTNALGKLRVTESDQPHVLTSSAQFG 120

Query: 121 NAQLTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKAPTNETSTENKGSNAGVAAQDGVV 180
           NAQLTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKAPTNETSTENKGSNAGVAAQDGVV
Sbjct: 121 NAQLTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKAPTNETSTENKGSNAGVAAQDGVV 180

Query: 181 SLSQLFKSNQIEKFTVDNSTYTQAQIRATFYPKFENEKSDQEVHACSCVLVFESLNYHLW 240
           SLSQLFKSNQIEKFTVDNSTYTQAQIRATFYPKFENEKSDQEVHACSCVLVFESLNYHLW
Sbjct: 181 SLSQLFKSNQIEKFTVDNSTYTQAQIRATFYPKFENEKSDQEVHACSCVLVFESLNYHLW 240

Query: 241 VIGQILLQLFGSIVFL 257
           VIGQILLQLFGSIVFL
Sbjct: 241 VIGQILLQLFGSIVFL 256

[Close]

BLAST of Csa1G087440 vs. NCBI nr
Match: gi|778658961|ref|XP_004147268.2| (PREDICTED: uncharacterized protein LOC101214899 isoform X1 [Cucumis sativus])

HSP 1 Score: 446.8 bits (1148), Expect = 2.5e-122
Identity = 224/235 (95.32%), Postives = 227/235 (96.60%), Query Frame = 1


Query: 1   MSALQRIFCAKTLPHPPFSSSYRVFPFISHPLSHYILPRSLTLAPLTSSPLPISCDSRFV 60
           MSALQRIFCAKTLPHPPFSSSYRVFPFISHPLSHYILPRSLTLAPLTSSPLPISCDSRFV
Sbjct: 1   MSALQRIFCAKTLPHPPFSSSYRVFPFISHPLSHYILPRSLTLAPLTSSPLPISCDSRFV 60

Query: 61  MPYNQRRGSRGEQKWKEKAKADRNSTESEAAAEVVTNALGKLRVTESDQPHVLTSSAQFG 120
           MPYNQRRGSRGEQKWKEKAKADRNSTESEAAAEVVTNALGKLRVTESDQPHVLTSSAQFG
Sbjct: 61  MPYNQRRGSRGEQKWKEKAKADRNSTESEAAAEVVTNALGKLRVTESDQPHVLTSSAQFG 120

Query: 121 NAQLTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKAPTNETSTENKGSNAGVAAQDGVV 180
           NAQLTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKAPTNETSTENKGSNAGVAAQDGVV
Sbjct: 121 NAQLTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKAPTNETSTENKGSNAGVAAQDGVV 180

Query: 181 SLSQLFKSNQIEKFTVDNSTYTQAQIRATFYPKFENEKSDQEVHACSCVLVFESL 236
           SLSQLFKSNQIEKFTVDNSTYTQAQIRATFYPKFENEKSDQE+      +V + L
Sbjct: 181 SLSQLFKSNQIEKFTVDNSTYTQAQIRATFYPKFENEKSDQEIRTRMIEMVSKGL 235

[Close]

BLAST of Csa1G087440 vs. NCBI nr
Match: gi|659072143|ref|XP_008463605.1| (PREDICTED: uncharacterized protein LOC103501711 isoform X1 [Cucumis melo])

HSP 1 Score: 401.7 bits (1031), Expect = 9.3e-109
Identity = 201/235 (85.53%), Postives = 210/235 (89.36%), Query Frame = 1


Query: 1   MSALQRIFCAKTLPHPPFSSSYRVFPFISHPLSHYILPRSLTLAPLTSSPLPISCDSRFV 60
           MSALQRIF AK LPHPPFSSSY+VFPFI HPLSH+ILPRSLTLAPLTSSP P+SCDSRFV
Sbjct: 1   MSALQRIFYAKILPHPPFSSSYKVFPFICHPLSHFILPRSLTLAPLTSSPFPLSCDSRFV 60

Query: 61  MPYNQRRGSRGEQKWKEKAKADRNSTESEAAAEVVTNALGKLRVTESDQPHVLTSSAQFG 120
           MPYNQRRG RGEQKWKEKAK D++ TESEAA EVVTNALGKLRVTESDQ HVLTSSAQFG
Sbjct: 61  MPYNQRRGGRGEQKWKEKAKVDKSPTESEAAVEVVTNALGKLRVTESDQSHVLTSSAQFG 120

Query: 121 NAQLTNQATPGLAHRAIWKPKAYGTTSGAAVIEGEKAPTNETSTENKGSNAGVAAQDGVV 180
           NAQLTNQA PGLAHRAIWKPKAYGTTSGAAVIEGEKA TN TSTENKGSNAG+A Q G V
Sbjct: 121 NAQLTNQAIPGLAHRAIWKPKAYGTTSGAAVIEGEKASTNGTSTENKGSNAGLAVQGGAV 180

Query: 181 SLSQLFKSNQIEKFTVDNSTYTQAQIRATFYPKFENEKSDQEVHACSCVLVFESL 236
            LSQLFKSNQIEKF VDNSTYTQAQIRATFYPKFENEKSDQE+      +V + L
Sbjct: 181 GLSQLFKSNQIEKFIVDNSTYTQAQIRATFYPKFENEKSDQEIRTRMIEMVSKGL 235

[Close]

BLAST of Csa1G087440 vs. NCBI nr
Match: gi|778658964|ref|XP_011653586.1| (PREDICTED: uncharacterized protein LOC101214899 isoform X2 [Cucumis sativus])

HSP 1 Score: 313.2 bits (801), Expect = 4.4e-82
Identity = 159/170 (93.53%), Postives = 162/170 (95.29%), Query Frame = 1


Query: 66  RRGSRGEQKWKEKAKADRNSTESEAAAEVVTNALGKLRVTESDQPHVLTSSAQFGNAQLT 125
           RRGSRGEQKWKEKAKADRNSTESEAAAEVVTNALGKLRVTESDQPHVLTSSAQFGNAQLT
Sbjct: 17  RRGSRGEQKWKEKAKADRNSTESEAAAEVVTNALGKLRVTESDQPHVLTSSAQFGNAQLT 76

Query: 126 NQATPGLAHRAIWKPKAYGTTSGAAVIEGEKAPTNETSTENKGSNAGVAAQDGVVSLSQL 185
           NQATPGLAHRAIWKPKAYGTTSGAAVIEGEKAPTNETSTENKGSNAGVAAQDGVVSLSQL
Sbjct: 77  NQATPGLAHRAIWKPKAYGTTSGAAVIEGEKAPTNETSTENKGSNAGVAAQDGVVSLSQL 136

Query: 186 FKSNQIEKFTVDNSTYTQAQIRATFYPKFENEKSDQEVHACSCVLVFESL 236
           FKSNQIEKFTVDNSTYTQAQIRATFYPKFENEKSDQE+      +V + L
Sbjct: 137 FKSNQIEKFTVDNSTYTQAQIRATFYPKFENEKSDQEIRTRMIEMVSKGL 186

[Close]

BLAST of Csa1G087440 vs. NCBI nr
Match: gi|659072145|ref|XP_008463612.1| (PREDICTED: uncharacterized protein LOC103501711 isoform X2 [Cucumis melo])

HSP 1 Score: 281.6 bits (719), Expect = 1.4e-72
Identity = 143/170 (84.12%), Postives = 149/170 (87.65%), Query Frame = 1


Query: 66  RRGSRGEQKWKEKAKADRNSTESEAAAEVVTNALGKLRVTESDQPHVLTSSAQFGNAQLT 125
           RRG RGEQKWKEKAK D++ TESEAA EVVTNALGKLRVTESDQ HVLTSSAQFGNAQLT
Sbjct: 11  RRGGRGEQKWKEKAKVDKSPTESEAAVEVVTNALGKLRVTESDQSHVLTSSAQFGNAQLT 70

Query: 126 NQATPGLAHRAIWKPKAYGTTSGAAVIEGEKAPTNETSTENKGSNAGVAAQDGVVSLSQL 185
           NQA PGLAHRAIWKPKAYGTTSGAAVIEGEKA TN TSTENKGSNAG+A Q G V LSQL
Sbjct: 71  NQAIPGLAHRAIWKPKAYGTTSGAAVIEGEKASTNGTSTENKGSNAGLAVQGGAVGLSQL 130

Query: 186 FKSNQIEKFTVDNSTYTQAQIRATFYPKFENEKSDQEVHACSCVLVFESL 236
           FKSNQIEKF VDNSTYTQAQIRATFYPKFENEKSDQE+      +V + L
Sbjct: 131 FKSNQIEKFIVDNSTYTQAQIRATFYPKFENEKSDQEIRTRMIEMVSKGL 180

The following BLAST results are available for this feature:

BLAST of Csa1G087440 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVA8_CUCSA	1.2e-142	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G087440 PE=4 SV=1	[more]
V4SLE1_9ROSI	1.9e-36	45.65	Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100277021mg PE...	[more]
A0A067GCQ7_CITSI	1.1e-34	44.78	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0460162mg PE=4 ...	[more]
A5BVB3_VITVI	2.6e-33	42.62	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015154 PE=4 SV=1	[more]
W9SCB2_9ROSA	2.4e-31	39.18	Uncharacterized protein OS=Morus notabilis GN=L484_014416 PE=4 SV=1	[more]

BLAST of Csa1G087440 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G07910.1	7.3e-19	36.31	RNAligase	[more]

BLAST of Csa1G087440 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209656\|gb\|KGN64752.1\|	1.7e-142	100.00	hypothetical protein Csa_1G087440 [Cucumis sativus]	[more]
gi\|778658961\|ref\|XP_004147268.2\|	2.5e-122	95.32	PREDICTED: uncharacterized protein LOC101214899 isoform X1 [Cucumis sativus]	[more]
gi\|659072143\|ref\|XP_008463605.1\|	9.3e-109	85.53	PREDICTED: uncharacterized protein LOC103501711 isoform X1 [Cucumis melo]	[more]
gi\|778658964\|ref\|XP_011653586.1\|	4.4e-82	93.53	PREDICTED: uncharacterized protein LOC101214899 isoform X2 [Cucumis sativus]	[more]
gi\|659072145\|ref\|XP_008463612.1\|	1.4e-72	84.12	PREDICTED: uncharacterized protein LOC103501711 isoform X2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G087440.1	Csa1G087440.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35460	FAMILY NOT NAMED	coord: 12..223 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G087440	Cucsa.207370	Cucumber (Gy14) v1	cgycuB314
Csa1G087440	Cp4.1LG20g09150	Cucurbita pepo (Zucchini)	cpecuB516

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G087440	Watermelon (97103) v2	cuwmbB028
Csa1G087440	Watermelon (97103) v2	cuwmbB034
Csa1G087440	Wax gourd	cuwgoB019
Csa1G087440	Wax gourd	cuwgoB037
Csa1G087440	Cucumber (Chinese Long) v2	cucuB041
Csa1G087440	Cucurbita maxima (Rimu)	cmacuB203
Csa1G087440	Cucurbita maxima (Rimu)	cmacuB431
Csa1G087440	Cucurbita maxima (Rimu)	cmacuB581
Csa1G087440	Cucurbita moschata (Rifu)	cmocuB188
Csa1G087440	Cucurbita moschata (Rifu)	cmocuB421
Csa1G087440	Cucurbita moschata (Rifu)	cmocuB570
Csa1G087440	Melon (DHL92) v3.5.1	cumeB012
Csa1G087440	Melon (DHL92) v3.5.1	cumeB015
Csa1G087440	Watermelon (Charleston Gray)	cuwcgB033
Csa1G087440	Watermelon (Charleston Gray)	cuwcgB037
Csa1G087440	Watermelon (97103) v1	cuwmB010
Csa1G087440	Watermelon (97103) v1	cuwmB070
Csa1G087440	Cucurbita pepo (Zucchini)	cpecuB528
Csa1G087440	Bottle gourd (USVL1VR-Ls)	culsiB002
Csa1G087440	Bottle gourd (USVL1VR-Ls)	culsiB024
Csa1G087440	Cucumber (Gy14) v2	cgybcuB001
Csa1G087440	Melon (DHL92) v3.6.1	cumedB008
Csa1G087440	Melon (DHL92) v3.6.1	cumedB010
Csa1G087440	Silver-seed gourd	carcuB0472
Csa1G087440	Silver-seed gourd	carcuB0745