Csa1G073880 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G073880
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 7608102 .. 7608718 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAGGAATTGGGGGATTTAGTGGGAATTTTGGAAGGGAAGAGAGCACGGCCGATGGAGAAACCGGTTTGGTTGGTGAGAGCGATGAAAGAGGAATCGATGGTGGCGTTGCCGTAGAGGGAGATGTTGGTTGAATTGAATCGATTGAAGAGGAAATCAAGGGAGGAAATGGAAGAGAAGAGAAGGAGGGGGAAAGAGAGAAGGAGGAATTGGAGCTTGAATGGGGCCATTGGAGGAGAGGAAGACAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAAAGAGTAATAAAAGAGGGAGACGGAATCAGGTAGGCTTAGTGGGTGGCAAGAAGGTTCGTGTGACCAATTTTCTTCGGTCAACTGTTAGGCTTTTAAATTCTGTGTCTTACACATACACTTTAACACCGACTCTTTCTTTCTTTCTTTCTTTCCCTCTTATCCAATCCATTTCCCTCAAGTTTAAGTATCACTTTTTAAGTTTCAACTTCCTTTCATACTCTCAAGTATTGTACCAAATCAAATTTTTAGTTTTGTCTTTCTCTTTTGTTCTCTTTTTTAGGTTGTATTTCAAATTCTCAAATCTAGTTCAGTTGTACTTAAAAGAAAGCCATAG

mRNA sequence

ATGGAAGAGGAATTGGGGGATTTAGTGGGAATTTTGGAAGGGAAGAGAGCACGGCCGATGGAGAAACCGGTTTGGTTGAGGGAGATGTTGGTTGAATTGAATCGATTGAAGAGGAAATCAAGGGAGGAAATGGAAGAGAAGAGAAGGAGGGGGAAAGAGAGAAGGAGGAATTGGAGCTTGAATGGGGCCATTGGAGGAGAGGAAGACAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAAAGAGTAATAAAAGAGGGAGACGGAATCAGGTAGGCTTAGTGGGTGGCAAGAAGGTTGTATTTCAAATTCTCAAATCTAGTTCAGTTGTACTTAAAAGAAAGCCATAG

Coding sequence (CDS)

ATGGAAGAGGAATTGGGGGATTTAGTGGGAATTTTGGAAGGGAAGAGAGCACGGCCGATGGAGAAACCGGTTTGGTTGAGGGAGATGTTGGTTGAATTGAATCGATTGAAGAGGAAATCAAGGGAGGAAATGGAAGAGAAGAGAAGGAGGGGGAAAGAGAGAAGGAGGAATTGGAGCTTGAATGGGGCCATTGGAGGAGAGGAAGACAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAAAGAGTAATAAAAGAGGGAGACGGAATCAGGTAGGCTTAGTGGGTGGCAAGAAGGTTGTATTTCAAATTCTCAAATCTAGTTCAGTTGTACTTAAAAGAAAGCCATAG

Protein sequence

MEEELGDLVGILEGKRARPMEKPVWLREMLVELNRLKRKSREEMEEKRRRGKERRRNWSLNGAIGGEEDRGRGRGRGRGRKSNKRGRRNQVGLVGGKKVVFQILKSSSVVLKRKP*
Homology
[Close]
BLAST of Csa1G073880 vs. TrEMBL
Match: A0A0A0LXE6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G073880 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.2e-57
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1 

Query: 1   MEEELGDLVGILEGKRARPMEKPVWLREMLVELNRLKRKSREEMEEKRRRGKERRRNWSL 60
           MEEELGDLVGILEGKRARPMEKPVWLREMLVELNRLKRKSREEMEEKRRRGKERRRNWSL
Sbjct: 1   MEEELGDLVGILEGKRARPMEKPVWLREMLVELNRLKRKSREEMEEKRRRGKERRRNWSL 60

Query: 61  NGAIGGEEDRGRGRGRGRGRKSNKRGRRNQVGLVGGKKVVFQILKSSSVVLKRKP 116
           NGAIGGEEDRGRGRGRGRGRKSNKRGRRNQVGLVGGKKVVFQILKSSSVVLKRKP
Sbjct: 61  NGAIGGEEDRGRGRGRGRGRKSNKRGRRNQVGLVGGKKVVFQILKSSSVVLKRKP 115

[Close]
BLAST of Csa1G073880 vs. NCBI nr
Match: gi|700209585|gb|KGN64681.1| (hypothetical protein Csa_1G073880 [Cucumis sativus])

HSP 1 Score: 230.3 bits (586), Expect = 1.7e-57
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1 

Query: 1   MEEELGDLVGILEGKRARPMEKPVWLREMLVELNRLKRKSREEMEEKRRRGKERRRNWSL 60
           MEEELGDLVGILEGKRARPMEKPVWLREMLVELNRLKRKSREEMEEKRRRGKERRRNWSL
Sbjct: 1   MEEELGDLVGILEGKRARPMEKPVWLREMLVELNRLKRKSREEMEEKRRRGKERRRNWSL 60

Query: 61  NGAIGGEEDRGRGRGRGRGRKSNKRGRRNQVGLVGGKKVVFQILKSSSVVLKRKP 116
           NGAIGGEEDRGRGRGRGRGRKSNKRGRRNQVGLVGGKKVVFQILKSSSVVLKRKP
Sbjct: 61  NGAIGGEEDRGRGRGRGRGRKSNKRGRRNQVGLVGGKKVVFQILKSSSVVLKRKP 115

The following BLAST results are available for this feature:
BLAST of Csa1G073880 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXE6_CUCSA1.2e-57100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G073880 PE=4 SV=1[more]
BLAST of Csa1G073880 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209585|gb|KGN64681.1|1.7e-57100.00hypothetical protein Csa_1G073880 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G073880.1Csa1G073880.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 26..50
scor

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G073880Cucurbita moschata (Rifu)cmocuB000
Csa1G073880Cucurbita moschata (Rifu)cmocuB203
Csa1G073880Cucurbita moschata (Rifu)cmocuB380
Csa1G073880Cucurbita moschata (Rifu)cmocuB419
Csa1G073880Cucurbita moschata (Rifu)cmocuB636
Csa1G073880Cucurbita moschata (Rifu)cmocuB836
Csa1G073880Melon (DHL92) v3.5.1cumeB027
Csa1G073880Melon (DHL92) v3.5.1cumeB083
Csa1G073880Watermelon (Charleston Gray)cuwcgB009
Csa1G073880Watermelon (Charleston Gray)cuwcgB012
Csa1G073880Watermelon (Charleston Gray)cuwcgB035
Csa1G073880Watermelon (97103) v1cuwmB008
Csa1G073880Watermelon (97103) v1cuwmB043
Csa1G073880Watermelon (97103) v1cuwmB075
Csa1G073880Cucurbita pepo (Zucchini)cpecuB029
Csa1G073880Cucurbita pepo (Zucchini)cpecuB058
Csa1G073880Cucurbita pepo (Zucchini)cpecuB474
Csa1G073880Cucurbita pepo (Zucchini)cpecuB506
Csa1G073880Cucurbita pepo (Zucchini)cpecuB770
Csa1G073880Bottle gourd (USVL1VR-Ls)culsiB019
Csa1G073880Bottle gourd (USVL1VR-Ls)culsiB022
Csa1G073880Cucumber (Gy14) v2cgybcuB001
Csa1G073880Cucumber (Gy14) v2cgybcuB158
Csa1G073880Cucumber (Gy14) v2cgybcuB239
Csa1G073880Melon (DHL92) v3.6.1cumedB022
Csa1G073880Melon (DHL92) v3.6.1cumedB077
Csa1G073880Silver-seed gourdcarcuB0163
Csa1G073880Silver-seed gourdcarcuB0186
Csa1G073880Silver-seed gourdcarcuB0575
Csa1G073880Silver-seed gourdcarcuB0661
Csa1G073880Silver-seed gourdcarcuB0963
Csa1G073880Watermelon (97103) v2cuwmbB000
Csa1G073880Watermelon (97103) v2cuwmbB023
Csa1G073880Watermelon (97103) v2cuwmbB032
Csa1G073880Wax gourdcuwgoB023
Csa1G073880Wax gourdcuwgoB038
Csa1G073880Wax gourdcuwgoB073
Csa1G073880Cucumber (Chinese Long) v2cucuB026
Csa1G073880Cucumber (Chinese Long) v2cucuB035
Csa1G073880Cucumber (Chinese Long) v2cucuB045
Csa1G073880Cucumber (Gy14) v1cgycuB015
Csa1G073880Cucumber (Gy14) v1cgycuB161
Csa1G073880Cucumber (Gy14) v1cgycuB170
Csa1G073880Cucurbita maxima (Rimu)cmacuB010
Csa1G073880Cucurbita maxima (Rimu)cmacuB218
Csa1G073880Cucurbita maxima (Rimu)cmacuB391
Csa1G073880Cucurbita maxima (Rimu)cmacuB648
Csa1G073880Cucurbita maxima (Rimu)cmacuB848