Csa1G065940 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G065940
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 6931655 .. 6931858 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAAATGGCTCAGCAAGATCTCGGATAACAGCTACAAAGCCAATCTGGAACCACCTCCTCTCCACCTTAACCACCCGTCAAATCGACTATGCCTTCTCTACAACTTCTCCTACGGCCATCACCACAAAGCCTATACTATTGGTCTATGCAGAGGAGACGTTATGCCCGACTCTTGCACAACCTGCCTCAACAACTCCATAA

mRNA sequence

ATGTTAAATGGCTCAGCAAGATCTCGGATAACAGCTACAAAGCCAATCTGGAACCACCTCCTCTCCACCTTAACCACCCGTCAAATCGACTATGCCTTCTCTACAACTTCTCCTACGGCCATCACCACAAAGCCTATACTATTGGTCTATGCAGAGGAGACGTTATGCCCGACTCTTGCACAACCTGCCTCAACAACTCCATAA

Coding sequence (CDS)

ATGTTAAATGGCTCAGCAAGATCTCGGATAACAGCTACAAAGCCAATCTGGAACCACCTCCTCTCCACCTTAACCACCCGTCAAATCGACTATGCCTTCTCTACAACTTCTCCTACGGCCATCACCACAAAGCCTATACTATTGGTCTATGCAGAGGAGACGTTATGCCCGACTCTTGCACAACCTGCCTCAACAACTCCATAA

Protein sequence

MLNGSARSRITATKPIWNHLLSTLTTRQIDYAFSTTSPTAITTKPILLVYAEETLCPTLAQPASTTP*
Homology
[Close]
BLAST of Csa1G065940 vs. TrEMBL
Match: A0A0A0LUB8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G065940 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.3e-29
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 

Query: 1  MLNGSARSRITATKPIWNHLLSTLTTRQIDYAFSTTSPTAITTKPILLVYAEETLCPTLA 60
          MLNGSARSRITATKPIWNHLLSTLTTRQIDYAFSTTSPTAITTKPILLVYAEETLCPTLA
Sbjct: 1  MLNGSARSRITATKPIWNHLLSTLTTRQIDYAFSTTSPTAITTKPILLVYAEETLCPTLA 60

Query: 61 QPASTTP 68
          QPASTTP
Sbjct: 61 QPASTTP 67

[Close]
BLAST of Csa1G065940 vs. NCBI nr
Match: gi|700209478|gb|KGN64574.1| (hypothetical protein Csa_1G065940 [Cucumis sativus])

HSP 1 Score: 136.3 bits (342), Expect = 1.9e-29
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 

Query: 1  MLNGSARSRITATKPIWNHLLSTLTTRQIDYAFSTTSPTAITTKPILLVYAEETLCPTLA 60
          MLNGSARSRITATKPIWNHLLSTLTTRQIDYAFSTTSPTAITTKPILLVYAEETLCPTLA
Sbjct: 1  MLNGSARSRITATKPIWNHLLSTLTTRQIDYAFSTTSPTAITTKPILLVYAEETLCPTLA 60

Query: 61 QPASTTP 68
          QPASTTP
Sbjct: 61 QPASTTP 67

The following BLAST results are available for this feature:
BLAST of Csa1G065940 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUB8_CUCSA1.3e-29100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G065940 PE=4 SV=1[more]
BLAST of Csa1G065940 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209478|gb|KGN64574.1|1.9e-29100.00hypothetical protein Csa_1G065940 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G065940.1Csa1G065940.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G065940Cucurbita moschata (Rifu)cmocuB203
Csa1G065940Cucurbita moschata (Rifu)cmocuB380
Csa1G065940Cucurbita moschata (Rifu)cmocuB491
Csa1G065940Cucurbita moschata (Rifu)cmocuB637
Csa1G065940Cucurbita moschata (Rifu)cmocuB835
Csa1G065940Melon (DHL92) v3.5.1cumeB027
Csa1G065940Melon (DHL92) v3.5.1cumeB040
Csa1G065940Melon (DHL92) v3.5.1cumeB083
Csa1G065940Watermelon (Charleston Gray)cuwcgB012
Csa1G065940Watermelon (Charleston Gray)cuwcgB032
Csa1G065940Watermelon (Charleston Gray)cuwcgB035
Csa1G065940Watermelon (97103) v1cuwmB008
Csa1G065940Watermelon (97103) v1cuwmB043
Csa1G065940Watermelon (97103) v1cuwmB067
Csa1G065940Cucurbita pepo (Zucchini)cpecuB029
Csa1G065940Cucurbita pepo (Zucchini)cpecuB055
Csa1G065940Cucurbita pepo (Zucchini)cpecuB474
Csa1G065940Cucurbita pepo (Zucchini)cpecuB506
Csa1G065940Bottle gourd (USVL1VR-Ls)culsiB012
Csa1G065940Bottle gourd (USVL1VR-Ls)culsiB019
Csa1G065940Bottle gourd (USVL1VR-Ls)culsiB022
Csa1G065940Cucumber (Gy14) v2cgybcuB001
Csa1G065940Cucumber (Gy14) v2cgybcuB239
Csa1G065940Melon (DHL92) v3.6.1cumedB022
Csa1G065940Melon (DHL92) v3.6.1cumedB077
Csa1G065940Silver-seed gourdcarcuB0661
Csa1G065940Silver-seed gourdcarcuB0814
Csa1G065940Silver-seed gourdcarcuB0888
Csa1G065940Silver-seed gourdcarcuB0945
Csa1G065940Silver-seed gourdcarcuB1020
Csa1G065940Watermelon (97103) v2cuwmbB000
Csa1G065940Watermelon (97103) v2cuwmbB029
Csa1G065940Watermelon (97103) v2cuwmbB032
Csa1G065940Wax gourdcuwgoB023
Csa1G065940Wax gourdcuwgoB051
Csa1G065940Cucumber (Chinese Long) v2cucuB035
Csa1G065940Cucumber (Chinese Long) v2cucuB044
Csa1G065940Cucumber (Gy14) v1cgycuB015
Csa1G065940Cucumber (Gy14) v1cgycuB087
Csa1G065940Cucurbita maxima (Rimu)cmacuB218
Csa1G065940Cucurbita maxima (Rimu)cmacuB397
Csa1G065940Cucurbita maxima (Rimu)cmacuB649
Csa1G065940Cucurbita maxima (Rimu)cmacuB848