Csa1G062950 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G062950
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Pentatricopeptide repeat-containing protein
Location	Chr1 : 6648142 .. 6649073 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGGGTTGCGACTTTCTCTGACTTATATTTCTTGTTTGCTATACTTGAAGGAAGTTGGGGTGTTTATTTTTTGCTTCACACAATTTAATGAACATTATATTGGTGTATTTAGAGGTTTACTTAGTTGTACTTCTCTTCGTTTTGTTTTGCTTGCAGATATTAGGGTATTTCATGAACTGGGTTTTTGGCATTCTATGATTTTTAGCCTCCTTTTTCTGAGGGGAAGTTCTGTTTTCAGACGAGGTTTTCATACGGGTAAGAAGCTTTTAAGTCCAAGCACCGAGGATATCATTTGTAAAGCAATTTGTGTTAATTTAAAACAGAGAAGATGGAAGTTCTTAGAGCAACTATCACCAAGTCTCACGAATTCGTTGGTCTGTCGTGTTATTCGCGAATTTCGCAACTCTCCACAGTTAGCTTTAGAATTCTACAACTGGGTTGAGGCAAGAGACAACTTTTCCCACTCATTAGAATCACGTTGTACCTTGGTTCACGTTTTAGTCAATTCCAGAAACTTTAATGATGCCTTGTCTATCATGGAGAGTTTAATACTTAAAATGGTAAGTCTCCATTGGAGGTTCTGGGAGGATTGATGAATAGCTACGAAATTTGTAATTCAAATCCTGCAGTCTTTGAGCACTGGTGAGGACGTGCACTCAGTTAAGGAGCGTGGAAGGTGCATATGACGTAATAAGAAAGTTGAGACTAGAAGGTTTTTGGGTTACGATTCATGCTTGGAATAACTTCTTAAATCTACTTTTAAAGTTGGGCGAGACTGATAAGTTTTAGAACATGTATAAGGAAATGATTGCCAGTGGTTACAGTGAAAATGTGAATACTTTTAATTTGATTATTTATGCTTTATGCAATGAATGTAAATTACTAGAAGCAATATATGTTGTTTATTTGATGCTGAAGATTGAAATTT

mRNA sequence

ATGACTGGGTTGCGACTTTCTCTGACTTATATTTCTTGTTTGCTATACTTGAAGGAAGTTGGGGTGTTTATTTTTTGCTTCACACAATTTAATGAACATTATATTGGTGTATTTAGAGGTTTACTTAGTTGTACTTCTCTTCGTTTTGTTTTGCTTGCAGATATTAGGGTATTTCATGAACTGGGTTTTTGGCATTCTATGATTTTTAGCCTCCTTTTTCTGAGGGGAAGTTCTGTTTTCAGACGAGGTTTTCATACGGGTAAGAAGCTTTTAAGTCCAAGCACCGAGGATATCATTTGTAAAGCAATTTGTGTTAATTTAAAACAGAGAAGATGGAAGTTCTTAGAGCAACTATCACCAAGTCTCACGAATTCGTTGGTCTGTCGTGTTATTCGCGAATTTCGCAACTCTCCACAGTTAGCTTTAGAATTCTACAACTGGGTTGAGGCAAGAGACAACTTTTCCCACTCATTAGAATCACGTTGTACCTTGGTTCACGTTTTAGTCAATTCCAGAAACTTTAATGATGCCTTGTCTATCATGGAGAGTTTAATACTTAAAATGGTAAGTCTCCATTGGAGGTTCTGGGAGGATTGA

Coding sequence (CDS)

ATGACTGGGTTGCGACTTTCTCTGACTTATATTTCTTGTTTGCTATACTTGAAGGAAGTTGGGGTGTTTATTTTTTGCTTCACACAATTTAATGAACATTATATTGGTGTATTTAGAGGTTTACTTAGTTGTACTTCTCTTCGTTTTGTTTTGCTTGCAGATATTAGGGTATTTCATGAACTGGGTTTTTGGCATTCTATGATTTTTAGCCTCCTTTTTCTGAGGGGAAGTTCTGTTTTCAGACGAGGTTTTCATACGGGTAAGAAGCTTTTAAGTCCAAGCACCGAGGATATCATTTGTAAAGCAATTTGTGTTAATTTAAAACAGAGAAGATGGAAGTTCTTAGAGCAACTATCACCAAGTCTCACGAATTCGTTGGTCTGTCGTGTTATTCGCGAATTTCGCAACTCTCCACAGTTAGCTTTAGAATTCTACAACTGGGTTGAGGCAAGAGACAACTTTTCCCACTCATTAGAATCACGTTGTACCTTGGTTCACGTTTTAGTCAATTCCAGAAACTTTAATGATGCCTTGTCTATCATGGAGAGTTTAATACTTAAAATGGTAAGTCTCCATTGGAGGTTCTGGGAGGATTGA

Protein sequence

MTGLRLSLTYISCLLYLKEVGVFIFCFTQFNEHYIGVFRGLLSCTSLRFVLLADIRVFHELGFWHSMIFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSPSLTNSLVCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSIMESLILKMVSLHWRFWED*

Homology

[Close]

BLAST of Csa1G062950 vs. Swiss-Prot
Match: PPR34_ARATH (Pentatricopeptide repeat-containing protein At1g11710, mitochondrial OS=Arabidopsis thaliana GN=At1g11710 PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.1e-27
Identity = 62/121 (51.24%), Postives = 81/121 (66.94%), Query Frame = 1


Query: 68  IFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSPSLTNSLV 127
           +F  +F R +S   R FH  KK  +P  EDI+  A+C+NL+QRRW  L Q S SLTN L+
Sbjct: 1   MFGHVFSRRTSFLVRCFHVAKKFSNPEPEDILFSALCLNLRQRRWNTLHQFSSSLTNPLI 60

Query: 128 CRVIREFRNSPQLALEFYNWVEARDNFSHS---LESRCTLVHVLVNSRNFNDALSIMESL 186
            RV+REFR+SP+LALEFYNWV   +  + S    E+ C ++H+LV SR F+DALSIM +L
Sbjct: 61  SRVLREFRSSPKLALEFYNWVLRSNTVAKSENRFEASCVMIHLLVGSRRFDDALSIMANL 120

[Close]

BLAST of Csa1G062950 vs. Swiss-Prot
Match: PP143_ARATH (Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 7.9e-07
Identity = 23/60 (38.33%), Postives = 37/60 (61.67%), Query Frame = 1


Query: 127 VCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSIMESLIL 186
           V RV+ E +  P+LA +F+ W   R+ F HS+ES C + H+L  +R + DA S+++ ++L
Sbjct: 111 VPRVLVELKEDPKLAFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVL 170

[Close]

BLAST of Csa1G062950 vs. Swiss-Prot
Match: PP338_ARATH (Pentatricopeptide repeat-containing protein At4g26680, mitochondrial OS=Arabidopsis thaliana GN=At4g26680 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 7.9e-07
Identity = 28/81 (34.57%), Postives = 44/81 (54.32%), Query Frame = 1


Query: 106 NLKQRRWKFLEQLSPSLTNSLVCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLV 165
           +L Q  W  L +LS  L +  V  V+ + +    L+LEF+NW + R+  SHSLE+   ++
Sbjct: 63  HLIQSDWDKLNKLSDHLDSFRVKNVLLKIQKDYLLSLEFFNWAKTRNPGSHSLETHAIVL 122

Query: 166 HVLVNSRNFNDALSIMESLIL 187
           H L  +R F  A SI+  +++
Sbjct: 123 HTLTKNRKFKSAESILRDVLV 143

[Close]

BLAST of Csa1G062950 vs. TrEMBL
Match: A0A0A0LRK7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G062950 PE=4 SV=1)

HSP 1 Score: 405.6 bits (1041), Expect = 3.5e-110
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1


Query: 1   MTGLRLSLTYISCLLYLKEVGVFIFCFTQFNEHYIGVFRGLLSCTSLRFVLLADIRVFHE 60
           MTGLRLSLTYISCLLYLKEVGVFIFCFTQFNEHYIGVFRGLLSCTSLRFVLLADIRVFHE
Sbjct: 1   MTGLRLSLTYISCLLYLKEVGVFIFCFTQFNEHYIGVFRGLLSCTSLRFVLLADIRVFHE 60

Query: 61  LGFWHSMIFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSP 120
           LGFWHSMIFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSP
Sbjct: 61  LGFWHSMIFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSP 120

Query: 121 SLTNSLVCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSI 180
           SLTNSLVCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSI
Sbjct: 121 SLTNSLVCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSI 180

Query: 181 MESLILKMVSLHWRFWED 199
           MESLILKMVSLHWRFWED
Sbjct: 181 MESLILKMVSLHWRFWED 198

[Close]

BLAST of Csa1G062950 vs. TrEMBL
Match: E5GC52_CUCME (Pentatricopeptide repeat-containing protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 1.1e-55
Identity = 111/121 (91.74%), Postives = 115/121 (95.04%), Query Frame = 1


Query: 67  MIFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSPSLTNSL 126
           M+FS  FLRGS VFRRGF TGKKLLSPSTEDII KAICVNLKQRRWKFLEQ+SPSLTNSL
Sbjct: 1   MVFSFTFLRGSFVFRRGFRTGKKLLSPSTEDIIYKAICVNLKQRRWKFLEQVSPSLTNSL 60

Query: 127 VCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSIMESLIL 186
           VCRV+REFRNSPQLALEFYNWVEARDNFSHSLES CTLVHVLVNSRNFNDALSIMESL+L
Sbjct: 61  VCRVVREFRNSPQLALEFYNWVEARDNFSHSLESCCTLVHVLVNSRNFNDALSIMESLML 120

Query: 187 K 188
           K
Sbjct: 121 K 121

[Close]

BLAST of Csa1G062950 vs. TrEMBL
Match: A0A061GNP0_THECC (Pentatricopeptide repeat superfamily protein, putative OS=Theobroma cacao GN=TCM_030228 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 4.1e-34
Identity = 70/113 (61.95%), Postives = 92/113 (81.42%), Query Frame = 1


Query: 73  FLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSPSLTNSLVCRVIR 132
           F R +S+F RG H GK+   PS+EDI+ +AICVNL+ RRWKFLEQ+SPSLT++LV RV+R
Sbjct: 73  FKRRTSLFSRGLHVGKQFSCPSSEDIVFRAICVNLRHRRWKFLEQVSPSLTDALVSRVVR 132

Query: 133 EFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSIMESLI 186
           EF+NSPQLALEF+NWV  +  F HSL S C L+HVLV SR F+DA++++E+L+
Sbjct: 133 EFQNSPQLALEFHNWVGEKKGFPHSLASCCALIHVLVKSRRFDDAITLLENLM 185

[Close]

BLAST of Csa1G062950 vs. TrEMBL
Match: A0A067JL81_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21216 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 6.9e-34
Identity = 72/130 (55.38%), Postives = 96/130 (73.85%), Query Frame = 1


Query: 56  RVFHELGFWHSMIFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFL 115
           + F E GF +SM  S    + S V  RGFH GK   +PS EDI+ KAICVNLK++RW FL
Sbjct: 12  KAFDEFGFPYSMFLSFWLPKRSPVLNRGFHVGKHFSNPSAEDIVFKAICVNLKRKRWNFL 71

Query: 116 EQLSPSLTNSLVCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFN 175
           EQ+SP+LT+SLV R++ EF++SP LALEFY W+  + N   S+ESRCT++HVLVNS+ ++
Sbjct: 72  EQMSPTLTSSLVSRIVCEFQHSPFLALEFYKWLLEKRNVVLSMESRCTIIHVLVNSKRYD 131

Query: 176 DALSIMESLI 186
           DALS+M  L+
Sbjct: 132 DALSLMGDLM 141

[Close]

BLAST of Csa1G062950 vs. TrEMBL
Match: A0A067GHV2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g006154mg PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 3.8e-32
Identity = 68/111 (61.26%), Postives = 87/111 (78.38%), Query Frame = 1


Query: 75  RGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSPSLTNSLVCRVIREF 134
           + +S   R FH GK+  +PSTEDI+ +AICVNL+QR+WK LEQ++PSLTNSLV RV+ EF
Sbjct: 11  KSNSPLSRAFHVGKQFANPSTEDIVFRAICVNLRQRKWKILEQMAPSLTNSLVNRVVSEF 70

Query: 135 RNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSIMESLI 186
           R SP+LALEFY WV   + FSHSLES C +VH+LVN R F+DAL +M +L+
Sbjct: 71  RKSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLM 121

[Close]

BLAST of Csa1G062950 vs. TAIR10
Match: AT1G11710.1 (AT1G11710.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 124.8 bits (312), Expect = 6.0e-29
Identity = 62/121 (51.24%), Postives = 81/121 (66.94%), Query Frame = 1


Query: 68  IFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSPSLTNSLV 127
           +F  +F R +S   R FH  KK  +P  EDI+  A+C+NL+QRRW  L Q S SLTN L+
Sbjct: 1   MFGHVFSRRTSFLVRCFHVAKKFSNPEPEDILFSALCLNLRQRRWNTLHQFSSSLTNPLI 60

Query: 128 CRVIREFRNSPQLALEFYNWVEARDNFSHS---LESRCTLVHVLVNSRNFNDALSIMESL 186
            RV+REFR+SP+LALEFYNWV   +  + S    E+ C ++H+LV SR F+DALSIM +L
Sbjct: 61  SRVLREFRSSPKLALEFYNWVLRSNTVAKSENRFEASCVMIHLLVGSRRFDDALSIMANL 120

[Close]

BLAST of Csa1G062950 vs. TAIR10
Match: AT2G02150.1 (AT2G02150.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 55.5 bits (132), Expect = 4.5e-08
Identity = 23/60 (38.33%), Postives = 37/60 (61.67%), Query Frame = 1


Query: 127 VCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSIMESLIL 186
           V RV+ E +  P+LA +F+ W   R+ F HS+ES C + H+L  +R + DA S+++ ++L
Sbjct: 111 VPRVLVELKEDPKLAFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVL 170

[Close]

BLAST of Csa1G062950 vs. TAIR10
Match: AT4G26680.1 (AT4G26680.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 55.5 bits (132), Expect = 4.5e-08
Identity = 28/81 (34.57%), Postives = 44/81 (54.32%), Query Frame = 1


Query: 106 NLKQRRWKFLEQLSPSLTNSLVCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLV 165
           +L Q  W  L +LS  L +  V  V+ + +    L+LEF+NW + R+  SHSLE+   ++
Sbjct: 63  HLIQSDWDKLNKLSDHLDSFRVKNVLLKIQKDYLLSLEFFNWAKTRNPGSHSLETHAIVL 122

Query: 166 HVLVNSRNFNDALSIMESLIL 187
           H L  +R F  A SI+  +++
Sbjct: 123 HTLTKNRKFKSAESILRDVLV 143

[Close]

BLAST of Csa1G062950 vs. NCBI nr
Match: gi|700209424|gb|KGN64520.1| (hypothetical protein Csa_1G062950 [Cucumis sativus])

HSP 1 Score: 405.6 bits (1041), Expect = 5.0e-110
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1


Query: 1   MTGLRLSLTYISCLLYLKEVGVFIFCFTQFNEHYIGVFRGLLSCTSLRFVLLADIRVFHE 60
           MTGLRLSLTYISCLLYLKEVGVFIFCFTQFNEHYIGVFRGLLSCTSLRFVLLADIRVFHE
Sbjct: 1   MTGLRLSLTYISCLLYLKEVGVFIFCFTQFNEHYIGVFRGLLSCTSLRFVLLADIRVFHE 60

Query: 61  LGFWHSMIFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSP 120
           LGFWHSMIFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSP
Sbjct: 61  LGFWHSMIFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSP 120

Query: 121 SLTNSLVCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSI 180
           SLTNSLVCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSI
Sbjct: 121 SLTNSLVCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSI 180

Query: 181 MESLILKMVSLHWRFWED 199
           MESLILKMVSLHWRFWED
Sbjct: 181 MESLILKMVSLHWRFWED 198

[Close]

BLAST of Csa1G062950 vs. NCBI nr
Match: gi|659067740|ref|XP_008441068.1| (PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g11710, mitochondrial [Cucumis melo])

HSP 1 Score: 224.6 bits (571), Expect = 1.6e-55
Identity = 111/121 (91.74%), Postives = 115/121 (95.04%), Query Frame = 1


Query: 67  MIFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSPSLTNSL 126
           M+FS  FLRGS VFRRGF TGKKLLSPSTEDII KAICVNLKQRRWKFLEQ+SPSLTNSL
Sbjct: 1   MVFSFTFLRGSFVFRRGFRTGKKLLSPSTEDIIYKAICVNLKQRRWKFLEQVSPSLTNSL 60

Query: 127 VCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSIMESLIL 186
           VCRV+REFRNSPQLALEFYNWVEARDNFSHSLES CTLVHVLVNSRNFNDALSIMESL+L
Sbjct: 61  VCRVVREFRNSPQLALEFYNWVEARDNFSHSLESCCTLVHVLVNSRNFNDALSIMESLML 120

Query: 187 K 188
           K
Sbjct: 121 K 121

[Close]

BLAST of Csa1G062950 vs. NCBI nr
Match: gi|307136214|gb|ADN34051.1| (pentatricopeptide repeat-containing protein [Cucumis melo subsp. melo])

HSP 1 Score: 224.6 bits (571), Expect = 1.6e-55
Identity = 111/121 (91.74%), Postives = 115/121 (95.04%), Query Frame = 1


Query: 67  MIFSLLFLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSPSLTNSL 126
           M+FS  FLRGS VFRRGF TGKKLLSPSTEDII KAICVNLKQRRWKFLEQ+SPSLTNSL
Sbjct: 1   MVFSFTFLRGSFVFRRGFRTGKKLLSPSTEDIIYKAICVNLKQRRWKFLEQVSPSLTNSL 60

Query: 127 VCRVIREFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSIMESLIL 186
           VCRV+REFRNSPQLALEFYNWVEARDNFSHSLES CTLVHVLVNSRNFNDALSIMESL+L
Sbjct: 61  VCRVVREFRNSPQLALEFYNWVEARDNFSHSLESCCTLVHVLVNSRNFNDALSIMESLML 120

Query: 187 K 188
           K
Sbjct: 121 K 121

[Close]

BLAST of Csa1G062950 vs. NCBI nr
Match: gi|1009108265|ref|XP_015883860.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g11710, mitochondrial [Ziziphus jujuba])

HSP 1 Score: 158.7 bits (400), Expect = 1.1e-35
Identity = 76/109 (69.72%), Postives = 89/109 (81.65%), Query Frame = 1


Query: 77  SSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSPSLTNSLVCRVIREFRN 136
           S +  RGFH GKK  +PS EDI+ +AIC+NLKQR+WKFLEQ+S SLTNSLV RV+REFR 
Sbjct: 11  SYLLTRGFHVGKKFSNPSAEDIVFRAICINLKQRKWKFLEQISSSLTNSLVSRVVREFRV 70

Query: 137 SPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSIMESLI 186
            PQLALEFYNWVE    FSHSLES CT++HVLVN+R F DALS+M SL+
Sbjct: 71  FPQLALEFYNWVEDGMKFSHSLESSCTVIHVLVNTRRFEDALSLMGSLM 119

[Close]

BLAST of Csa1G062950 vs. NCBI nr
Match: gi|590626138|ref|XP_007026082.1| (Pentatricopeptide repeat superfamily protein, putative [Theobroma cacao])

HSP 1 Score: 152.9 bits (385), Expect = 5.8e-34
Identity = 70/113 (61.95%), Postives = 92/113 (81.42%), Query Frame = 1


Query: 73  FLRGSSVFRRGFHTGKKLLSPSTEDIICKAICVNLKQRRWKFLEQLSPSLTNSLVCRVIR 132
           F R +S+F RG H GK+   PS+EDI+ +AICVNL+ RRWKFLEQ+SPSLT++LV RV+R
Sbjct: 73  FKRRTSLFSRGLHVGKQFSCPSSEDIVFRAICVNLRHRRWKFLEQVSPSLTDALVSRVVR 132

Query: 133 EFRNSPQLALEFYNWVEARDNFSHSLESRCTLVHVLVNSRNFNDALSIMESLI 186
           EF+NSPQLALEF+NWV  +  F HSL S C L+HVLV SR F+DA++++E+L+
Sbjct: 133 EFQNSPQLALEFHNWVGEKKGFPHSLASCCALIHVLVKSRRFDDAITLLENLM 185

The following BLAST results are available for this feature:

BLAST of Csa1G062950 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PPR34_ARATH	1.1e-27	51.24	Pentatricopeptide repeat-containing protein At1g11710, mitochondrial OS=Arabidop...	[more]
PP143_ARATH	7.9e-07	38.33	Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis th...	[more]
PP338_ARATH	7.9e-07	34.57	Pentatricopeptide repeat-containing protein At4g26680, mitochondrial OS=Arabidop...	[more]

BLAST of Csa1G062950 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRK7_CUCSA	3.5e-110	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G062950 PE=4 SV=1	[more]
E5GC52_CUCME	1.1e-55	91.74	Pentatricopeptide repeat-containing protein OS=Cucumis melo subsp. melo PE=4 SV=...	[more]
A0A061GNP0_THECC	4.1e-34	61.95	Pentatricopeptide repeat superfamily protein, putative OS=Theobroma cacao GN=TCM...	[more]
A0A067JL81_JATCU	6.9e-34	55.38	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21216 PE=4 SV=1	[more]
A0A067GHV2_CITSI	3.8e-32	61.26	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g006154mg PE=4 SV=1	[more]

BLAST of Csa1G062950 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G11710.1	6.0e-29	51.24	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G02150.1	4.5e-08	38.33	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G26680.1	4.5e-08	34.57	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Csa1G062950 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209424\|gb\|KGN64520.1\|	5.0e-110	100.00	hypothetical protein Csa_1G062950 [Cucumis sativus]	[more]
gi\|659067740\|ref\|XP_008441068.1\|	1.6e-55	91.74	PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g...	[more]
gi\|307136214\|gb\|ADN34051.1\|	1.6e-55	91.74	pentatricopeptide repeat-containing protein [Cucumis melo subsp. melo]	[more]
gi\|1009108265\|ref\|XP_015883860.1\|	1.1e-35	69.72	PREDICTED: pentatricopeptide repeat-containing protein At1g11710, mitochondrial ...	[more]
gi\|590626138\|ref\|XP_007026082.1\|	5.8e-34	61.95	Pentatricopeptide repeat superfamily protein, putative [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU105790	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G062950.1	Csa1G062950.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU105790	CU105790	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 66..184 score: 3.0
None	No IPR available	PANTHER	PTHR24015:SF566	SUBFAMILY NOT NAMED	coord: 66..184 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G062950	Watermelon (97103) v2	cuwmbB000
Csa1G062950	Watermelon (97103) v2	cuwmbB032
Csa1G062950	Wax gourd	cuwgoB023
Csa1G062950	Wax gourd	cuwgoB033
Csa1G062950	Cucumber (Chinese Long) v2	cucuB035
Csa1G062950	Cucumber (Gy14) v1	cgycuB015
Csa1G062950	Cucumber (Gy14) v1	cgycuB087
Csa1G062950	Cucurbita maxima (Rimu)	cmacuB218
Csa1G062950	Cucurbita maxima (Rimu)	cmacuB397
Csa1G062950	Cucurbita maxima (Rimu)	cmacuB649
Csa1G062950	Cucurbita maxima (Rimu)	cmacuB848
Csa1G062950	Cucurbita moschata (Rifu)	cmocuB203
Csa1G062950	Cucurbita moschata (Rifu)	cmocuB380
Csa1G062950	Cucurbita moschata (Rifu)	cmocuB637
Csa1G062950	Cucurbita moschata (Rifu)	cmocuB835
Csa1G062950	Melon (DHL92) v3.5.1	cumeB027
Csa1G062950	Melon (DHL92) v3.5.1	cumeB083
Csa1G062950	Watermelon (Charleston Gray)	cuwcgB012
Csa1G062950	Watermelon (Charleston Gray)	cuwcgB035
Csa1G062950	Watermelon (97103) v1	cuwmB008
Csa1G062950	Watermelon (97103) v1	cuwmB043
Csa1G062950	Cucurbita pepo (Zucchini)	cpecuB029
Csa1G062950	Cucurbita pepo (Zucchini)	cpecuB055
Csa1G062950	Cucurbita pepo (Zucchini)	cpecuB474
Csa1G062950	Cucurbita pepo (Zucchini)	cpecuB506
Csa1G062950	Bottle gourd (USVL1VR-Ls)	culsiB019
Csa1G062950	Bottle gourd (USVL1VR-Ls)	culsiB022
Csa1G062950	Cucumber (Gy14) v2	cgybcuB001
Csa1G062950	Cucumber (Gy14) v2	cgybcuB239
Csa1G062950	Melon (DHL92) v3.6.1	cumedB022
Csa1G062950	Melon (DHL92) v3.6.1	cumedB077
Csa1G062950	Silver-seed gourd	carcuB0523
Csa1G062950	Silver-seed gourd	carcuB0661
Csa1G062950	Silver-seed gourd	carcuB0945
Csa1G062950	Silver-seed gourd	carcuB1020