Csa1G057020 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G057020
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 6285702 .. 6288084 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATTCCCAACTACCCACCGCCGTCGAAAGACGACAAACAACAACAGCTTTTGTAGAGCTCCATGCACGCTGCTGCTGTCTCCATTGGTATACCAAATTTCAACTTTCAATGTGAAAATTATTTGTCCTCACTTCTAAATTATCCCAACCATTTTTTATTTACGTTTAGTCATATAAGAAATCCACAGACGTACTAATTAGATTTAAAATATTTGTAAATATAACAACATTTTAAAAAGTTATAGATATAGTAAAATCTATCGACGATAATTATATAAGTTTATCGTTGATAGATCGTATTGCAAACATCAACCCATAACATCACAAGAGGTTATTAATAATAGAAGTCTATCATTTATAACATTTGCTATACTTACATATTTTCTAACTTTAATTACATACTTAATTATTATTCTAAAAATTGTTAATTACCTTTTTATGTTTGTTCTATGAACACTCTTAATACATAAAGAATCAACATATTTAAATATTTATTGTTTTCATCAATTTTCAAAAAATATATATTTATATATATTCTAACATGCATTCATCTCATATACTTAGTTTTAATGTCTTTTATATTATTTTTGTACAGTGAAGAGCATATAAAAATGCATCTAATCACTTTACTTACAAAATGAGAGTAATGAATAATTTTAAAATATCATAATATAGGCCTAAAATTCAAATCAATTTAGACTATAAACTAATATTTGTATGGATTAAAAACCCTAAAATTTTTAAAATATGTATAGATTTACATCTCAAACTATTTGAAAGGTTGAATAGCTATTGTTGTACTACACAAAATATGGAATATTCTAACCCCAAATATACTTGTGGTACGTAGCAAAAAGAATCTATGCCAAGGGGTTTTTTGATCTTCTTCTCAGTACAGGAGTTGCAGACGCCGGCGGTCACTTCCCGTCTCCATCTCCATCCAAGCGTGGATCCTCAGCCGCAAGCGACGCCTTTTTGCTCGGGTTCAGCCGCAAGTCAGTCGCGCCCTCTCCTCTATAGCATGCCACCTCCGCCAGCTGAGTGCCACGTAGGATTGACAAGTGTGCGGAGTCGTGTACCCTATTTTTTACATTATTTATATTAAAAAAAATCGGTTTATTTTGAAATGACATTGAAAATCGTGAAGTGGCAAATTTATATCATCTGTTTATATAAAAACTTCATTTTTGTAGGCAGTACTGAAGATACCCTAACTCAGCGGCCCCGCCTCACTGAAAGTGAAGTAGACAGTGGAAGAGTTTCAACACAACTCAACGTTGTAGGTAATTTTTTATTCTTTATCTTCAATTTCCCTCTCTCATTTTCGTCCATGTTCTTGCTTTCTTCGTTCGGCGGTTCTTTGTATGTGTGTTTTGGATTTGTTAATTTATTTATTTATTGTTCAATTAAGGGTGAGGATTCAACATCATGGAGGTCATTGATGACGTTCTAATTTGACTTTAAAACTATTTCTAAAAAAACCCGTTTGTGGGTGTTCTGGAATGACTGAAAAAATCTGTGTAAGATTGACGCCAATTTGCGAACTTTGAACTGAGAACAACAACAATGAACTACTCAACTAATTTTCCAGTGATGCTGTACCTCCCCACCTCAACTTTTTTTATTTTTCACTATCTTTCTTGCGTATTACTGTTCTGTTTGAAGTCAAAGGATGAATTCCCCCCCACAAACTTTCTGCAGTTCCGTGGAATACTGTCTATGGTTGGTGGTTTTTTCTTTCTTTCTTGATCTTAATCCACGTTCACATATCAGTTATTTTAAAGTTTTTTGGATAAGTGTCAGCTCGACATAATCTTTTCTCTGTTTTTTGTGTTCGTTTATTTTTATATGAACCTCCACTTGTAGGATAAGCTTGCCAAGTGGCTTTTATCAATTATTGTTGAAAATATTGGGATGATACTGAACGTTAATGATTCATTGGTCAAGGTTTATTAAACTGTAAACAATTTTGATGATAAATTTCTCATTGGTAATATATTGACGGCAAAATGAGTTCGATTGTGTTGGTATTATTTTTTAGGTTGATATATTGGAAATTGCGGTTCATGTGTTGGGTACAAACGTCAGTCCACATCATATCTATGTGAATTTTCTTGATATGTCTAAGCGTAAAGTAGACAAATGATGAATTACACTTATTTGTCAAAGTTGTCAATTTGTTCAAAACAGAGTAATTTGTATTTTGTTAAGTATGTTGTAGTTGTTAATTTGTCTCCTATTTATACAAGAGGAGAGTATTGTAATTGGTGTGACGAATGAGTTTTAGGAATAATAATCCAAACCTCTCATACTTGTTGCCTATGTATTAGTAATGGGGTATAGAGATAATGTTTCTGACACTAGCGGTTTGACAGGCTGA

mRNA sequence

ATGGCATTCCCAACTACCCACCGCCGTCGAAAGACGACAAACAACAACAGCTTTTGTAGAGCTCCATGCACGCTGCTGCTGTCTCCATTGGAGTTGCAGACGCCGGCGGTCACTTCCCGTCTCCATCTCCATCCAAGCGTGGATCCTCAGCCGCAAGCGACGCCTTTTTGCTCGGGTTCAGCCGCAAGTCAGTCGCGCCCTCTCCTCTATAGCATGCCACCTCCGCCAGCTGAGTGCCACGTAGGATTGACAAGCAGTACTGAAGATACCCTAACTCAGCGGCCCCGCCTCACTGAAAGTGAAGTAGACAGTGGAAGAGTTTCAACACAACTCAACGTTGTAGGCTGA

Coding sequence (CDS)

ATGGCATTCCCAACTACCCACCGCCGTCGAAAGACGACAAACAACAACAGCTTTTGTAGAGCTCCATGCACGCTGCTGCTGTCTCCATTGGAGTTGCAGACGCCGGCGGTCACTTCCCGTCTCCATCTCCATCCAAGCGTGGATCCTCAGCCGCAAGCGACGCCTTTTTGCTCGGGTTCAGCCGCAAGTCAGTCGCGCCCTCTCCTCTATAGCATGCCACCTCCGCCAGCTGAGTGCCACGTAGGATTGACAAGCAGTACTGAAGATACCCTAACTCAGCGGCCCCGCCTCACTGAAAGTGAAGTAGACAGTGGAAGAGTTTCAACACAACTCAACGTTGTAGGCTGA

Protein sequence

MAFPTTHRRRKTTNNNSFCRAPCTLLLSPLELQTPAVTSRLHLHPSVDPQPQATPFCSGSAASQSRPLLYSMPPPPAECHVGLTSSTEDTLTQRPRLTESEVDSGRVSTQLNVVG*
Homology
[Close]
BLAST of Csa1G057020 vs. TrEMBL
Match: A0A0A0LWV8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G057020 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 5.6e-60
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1 

Query: 1   MAFPTTHRRRKTTNNNSFCRAPCTLLLSPLELQTPAVTSRLHLHPSVDPQPQATPFCSGS 60
           MAFPTTHRRRKTTNNNSFCRAPCTLLLSPLELQTPAVTSRLHLHPSVDPQPQATPFCSGS
Sbjct: 1   MAFPTTHRRRKTTNNNSFCRAPCTLLLSPLELQTPAVTSRLHLHPSVDPQPQATPFCSGS 60

Query: 61  AASQSRPLLYSMPPPPAECHVGLTSSTEDTLTQRPRLTESEVDSGRVSTQLNVVG 116
           AASQSRPLLYSMPPPPAECHVGLTSSTEDTLTQRPRLTESEVDSGRVSTQLNVVG
Sbjct: 61  AASQSRPLLYSMPPPPAECHVGLTSSTEDTLTQRPRLTESEVDSGRVSTQLNVVG 115

[Close]
BLAST of Csa1G057020 vs. NCBI nr
Match: gi|700209370|gb|KGN64466.1| (hypothetical protein Csa_1G057020 [Cucumis sativus])

HSP 1 Score: 238.0 bits (606), Expect = 8.0e-60
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1 

Query: 1   MAFPTTHRRRKTTNNNSFCRAPCTLLLSPLELQTPAVTSRLHLHPSVDPQPQATPFCSGS 60
           MAFPTTHRRRKTTNNNSFCRAPCTLLLSPLELQTPAVTSRLHLHPSVDPQPQATPFCSGS
Sbjct: 1   MAFPTTHRRRKTTNNNSFCRAPCTLLLSPLELQTPAVTSRLHLHPSVDPQPQATPFCSGS 60

Query: 61  AASQSRPLLYSMPPPPAECHVGLTSSTEDTLTQRPRLTESEVDSGRVSTQLNVVG 116
           AASQSRPLLYSMPPPPAECHVGLTSSTEDTLTQRPRLTESEVDSGRVSTQLNVVG
Sbjct: 61  AASQSRPLLYSMPPPPAECHVGLTSSTEDTLTQRPRLTESEVDSGRVSTQLNVVG 115

The following BLAST results are available for this feature:
BLAST of Csa1G057020 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LWV8_CUCSA5.6e-60100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G057020 PE=4 SV=1[more]
BLAST of Csa1G057020 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209370|gb|KGN64466.1|8.0e-60100.00hypothetical protein Csa_1G057020 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU151363cucumber EST collection version 3.0transcribed_cluster
CU152863cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G057020.1Csa1G057020.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU151363CU151363transcribed_cluster
CU152863CU152863transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G057020Melon (DHL92) v3.6.1cumedB022
Csa1G057020Silver-seed gourdcarcuB0523
Csa1G057020Silver-seed gourdcarcuB1017
Csa1G057020Watermelon (97103) v2cuwmbB032
Csa1G057020Wax gourdcuwgoB026
Csa1G057020Cucumber (Gy14) v1cgycuB188
Csa1G057020Cucurbita maxima (Rimu)cmacuB204
Csa1G057020Cucurbita maxima (Rimu)cmacuB397
Csa1G057020Cucurbita moschata (Rifu)cmocuB189
Csa1G057020Cucurbita moschata (Rifu)cmocuB380
Csa1G057020Melon (DHL92) v3.5.1cumeB027
Csa1G057020Watermelon (Charleston Gray)cuwcgB035
Csa1G057020Watermelon (97103) v1cuwmB008
Csa1G057020Cucurbita pepo (Zucchini)cpecuB029
Csa1G057020Cucurbita pepo (Zucchini)cpecuB515
Csa1G057020Bottle gourd (USVL1VR-Ls)culsiB022
Csa1G057020Cucumber (Gy14) v2cgybcuB001