Csa1G051800 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G051800
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 6157733 .. 6158090 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAGAGGATATTAGGAATCTCCGACTACGAATTAAATTGGAGGGCACTCGTTTTTCTGTGGCCACGGCCGTTCTTTGTGTATATATCGAGAGATTGAAGAGAAGGAAAGATCCCGCCTTGATGTGGCGAAGTTTCACAAACCGACGCCCAATTTTTGGTAATGGGGAGTGGGGGAGTATTGGGTTCTCTTTCAATTTGACGGCACTAATTTAACGCTCACCTCCTAATTTCTCTCCATTTCGCCTTCTCTTCCAACTTTTTTTCTCACTTCCTCTCTGTCCGCCGATTCTTGGCTCTACTCTTTGAAGCTCGATTTCGTGCTTCGAATCATTTGGGGGAACCTGGAGAAGATTAG

mRNA sequence

ATGTTAGAGGATATTAGGAATCTCCGACTACGAATTAAATTGGAGGGCACTCGTTTTTCTGTGGCCACGGCCGTTCTTTGTGTATATATCGAGAGATTGAAGAGAAGGAAAGATCCCGCCTTGATGTGGCGAAGTTTCACAAACCGACGCCCAATTTTTGCTCGATTTCGTGCTTCGAATCATTTGGGGGAACCTGGAGAAGATTAG

Coding sequence (CDS)

ATGTTAGAGGATATTAGGAATCTCCGACTACGAATTAAATTGGAGGGCACTCGTTTTTCTGTGGCCACGGCCGTTCTTTGTGTATATATCGAGAGATTGAAGAGAAGGAAAGATCCCGCCTTGATGTGGCGAAGTTTCACAAACCGACGCCCAATTTTTGCTCGATTTCGTGCTTCGAATCATTTGGGGGAACCTGGAGAAGATTAG

Protein sequence

MLEDIRNLRLRIKLEGTRFSVATAVLCVYIERLKRRKDPALMWRSFTNRRPIFARFRASNHLGEPGED*
Homology
[Close]
BLAST of Csa1G051800 vs. TrEMBL
Match: A0A0A0LRP4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G051800 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.2e-30
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 1  MLEDIRNLRLRIKLEGTRFSVATAVLCVYIERLKRRKDPALMWRSFTNRRPIFARFRASN 60
          MLEDIRNLRLRIKLEGTRFSVATAVLCVYIERLKRRKDPALMWRSFTNRRPIFARFRASN
Sbjct: 1  MLEDIRNLRLRIKLEGTRFSVATAVLCVYIERLKRRKDPALMWRSFTNRRPIFARFRASN 60

Query: 61 HLGEPGED 69
          HLGEPGED
Sbjct: 61 HLGEPGED 68

[Close]
BLAST of Csa1G051800 vs. NCBI nr
Match: gi|700209347|gb|KGN64443.1| (hypothetical protein Csa_1G051800 [Cucumis sativus])

HSP 1 Score: 139.8 bits (351), Expect = 1.8e-30
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 1  MLEDIRNLRLRIKLEGTRFSVATAVLCVYIERLKRRKDPALMWRSFTNRRPIFARFRASN 60
          MLEDIRNLRLRIKLEGTRFSVATAVLCVYIERLKRRKDPALMWRSFTNRRPIFARFRASN
Sbjct: 1  MLEDIRNLRLRIKLEGTRFSVATAVLCVYIERLKRRKDPALMWRSFTNRRPIFARFRASN 60

Query: 61 HLGEPGED 69
          HLGEPGED
Sbjct: 61 HLGEPGED 68

The following BLAST results are available for this feature:
BLAST of Csa1G051800 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRP4_CUCSA1.2e-30100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G051800 PE=4 SV=1[more]
BLAST of Csa1G051800 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209347|gb|KGN64443.1|1.8e-30100.00hypothetical protein Csa_1G051800 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU101689cucumber EST collection version 3.0transcribed_cluster
CU110631cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G051800.1Csa1G051800.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU101689CU101689transcribed_cluster
CU110631CU110631transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G051800Cucurbita moschata (Rifu)cmocuB189
Csa1G051800Cucurbita moschata (Rifu)cmocuB380
Csa1G051800Melon (DHL92) v3.5.1cumeB027
Csa1G051800Watermelon (Charleston Gray)cuwcgB035
Csa1G051800Watermelon (97103) v1cuwmB008
Csa1G051800Cucurbita pepo (Zucchini)cpecuB029
Csa1G051800Cucurbita pepo (Zucchini)cpecuB515
Csa1G051800Bottle gourd (USVL1VR-Ls)culsiB022
Csa1G051800Cucumber (Gy14) v2cgybcuB001
Csa1G051800Melon (DHL92) v3.6.1cumedB022
Csa1G051800Silver-seed gourdcarcuB0523
Csa1G051800Silver-seed gourdcarcuB1017
Csa1G051800Watermelon (97103) v2cuwmbB032
Csa1G051800Wax gourdcuwgoB032
Csa1G051800Cucumber (Gy14) v1cgycuB188
Csa1G051800Cucurbita maxima (Rimu)cmacuB204
Csa1G051800Cucurbita maxima (Rimu)cmacuB397