Csa1G050010 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G050010
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 5692344 .. 5692812 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGAACAACCGAAAGAAAACACTTGGAGGAGTGGTATTCTTCTGTGCTTGGCCCGGATCTCGAGCCAAGACAGGAGACACGAAACGGATCTCCAAATAGCAGCAACTGAGAGGAGGAAGAAAATGGAATGTGAAAAGGAAAATAGAAATGGAAGGAAGTGGAAAACCCTAGATCAGAAAAGCAAAGCGCGCCGGTTTATCGGACCCCGATCCGAATTTGTCTGGTTCTTGTTGCCGGTTGAGAGAGAGAGTAAGAGAGAAAGAAAGAAAGAAAACTGGAAGAGGAAAAAAAAACGGATGAGGGCAAATAAAAAAATGGGGCGAAAGAGGGGTATTTATATGGAGGCTACGGTTAGAAAAGCACACGTCATCAAAGAAGGGGTTTGGGTTTATCCTTCTTTGAGGCTGTACACGTGGCGCCATTGCTTTAGCCCAATTACCGGTTGTACAGTTTTCCCCGCGCTAA

mRNA sequence

ATGAATGAACAACCGAAAGAAAACACTTGGAGGAGTGGTATTCTTCTGTGCTTGGCCCGGATCTCGAGCCAAGACAGGAGACACGAAACGGATCTCCAAATAGCAGCAACTGAGAGGAGGAAGAAAATGGAATGTGAAAAGGAAAATAGAAATGGAAGGAAGTGGAAAACCCTAGATCAGAAAAGCAAAGCGCGCCGGTTTATCGGACCCCGATCCGAATTTGTCTGGTTCTTGTTGCCGGTTGAGAGAGAGAGCTGTACACGTGGCGCCATTGCTTTAGCCCAATTACCGGTTGTACAGTTTTCCCCGCGCTAA

Coding sequence (CDS)

ATGAATGAACAACCGAAAGAAAACACTTGGAGGAGTGGTATTCTTCTGTGCTTGGCCCGGATCTCGAGCCAAGACAGGAGACACGAAACGGATCTCCAAATAGCAGCAACTGAGAGGAGGAAGAAAATGGAATGTGAAAAGGAAAATAGAAATGGAAGGAAGTGGAAAACCCTAGATCAGAAAAGCAAAGCGCGCCGGTTTATCGGACCCCGATCCGAATTTGTCTGGTTCTTGTTGCCGGTTGAGAGAGAGAGCTGTACACGTGGCGCCATTGCTTTAGCCCAATTACCGGTTGTACAGTTTTCCCCGCGCTAA

Protein sequence

MNEQPKENTWRSGILLCLARISSQDRRHETDLQIAATERRKKMECEKENRNGRKWKTLDQKSKARRFIGPRSEFVWFLLPVERESCTRGAIALAQLPVVQFSPR*

Homology

[Close]

BLAST of Csa1G050010 vs. TrEMBL
Match: A0A0A0LU87_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050010 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 4.6e-53
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1


Query: 1   MNEQPKENTWRSGILLCLARISSQDRRHETDLQIAATERRKKMECEKENRNGRKWKTLDQ 60
           MNEQPKENTWRSGILLCLARISSQDRRHETDLQIAATERRKKMECEKENRNGRKWKTLDQ
Sbjct: 1   MNEQPKENTWRSGILLCLARISSQDRRHETDLQIAATERRKKMECEKENRNGRKWKTLDQ 60

Query: 61  KSKARRFIGPRSEFVWFLLPVERESCTRGAIALAQLPVVQFSPR 105
           KSKARRFIGPRSEFVWFLLPVERESCTRGAIALAQLPVVQFSPR
Sbjct: 61  KSKARRFIGPRSEFVWFLLPVERESCTRGAIALAQLPVVQFSPR 104

[Close]

BLAST of Csa1G050010 vs. NCBI nr
Match: gi|700209266|gb|KGN64362.1| (hypothetical protein Csa_1G050010 [Cucumis sativus])

HSP 1 Score: 214.9 bits (546), Expect = 6.6e-53
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1


Query: 1   MNEQPKENTWRSGILLCLARISSQDRRHETDLQIAATERRKKMECEKENRNGRKWKTLDQ 60
           MNEQPKENTWRSGILLCLARISSQDRRHETDLQIAATERRKKMECEKENRNGRKWKTLDQ
Sbjct: 1   MNEQPKENTWRSGILLCLARISSQDRRHETDLQIAATERRKKMECEKENRNGRKWKTLDQ 60

Query: 61  KSKARRFIGPRSEFVWFLLPVERESCTRGAIALAQLPVVQFSPR 105
           KSKARRFIGPRSEFVWFLLPVERESCTRGAIALAQLPVVQFSPR
Sbjct: 61  KSKARRFIGPRSEFVWFLLPVERESCTRGAIALAQLPVVQFSPR 104

The following BLAST results are available for this feature:

BLAST of Csa1G050010 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LU87_CUCSA	4.6e-53	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050010 PE=4 SV=1	[more]

BLAST of Csa1G050010 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209266\|gb\|KGN64362.1\|	6.6e-53	100.00	hypothetical protein Csa_1G050010 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU161505	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G050010.1	Csa1G050010.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU161505	CU161505	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G050010	Cucurbita maxima (Rimu)	cmacuB204
Csa1G050010	Cucurbita maxima (Rimu)	cmacuB390
Csa1G050010	Cucurbita moschata (Rifu)	cmocuB189
Csa1G050010	Cucurbita moschata (Rifu)	cmocuB380
Csa1G050010	Melon (DHL92) v3.5.1	cumeB027
Csa1G050010	Watermelon (Charleston Gray)	cuwcgB035
Csa1G050010	Watermelon (Charleston Gray)	cuwcgB089
Csa1G050010	Watermelon (97103) v1	cuwmB008
Csa1G050010	Cucurbita pepo (Zucchini)	cpecuB029
Csa1G050010	Cucurbita pepo (Zucchini)	cpecuB515
Csa1G050010	Bottle gourd (USVL1VR-Ls)	culsiB085
Csa1G050010	Bottle gourd (USVL1VR-Ls)	culsiB022
Csa1G050010	Cucumber (Gy14) v2	cgybcuB001
Csa1G050010	Melon (DHL92) v3.6.1	cumedB022
Csa1G050010	Silver-seed gourd	carcuB0523
Csa1G050010	Silver-seed gourd	carcuB1017
Csa1G050010	Watermelon (97103) v2	cuwmbB032
Csa1G050010	Watermelon (97103) v2	cuwmbB087
Csa1G050010	Wax gourd	cuwgoB030
Csa1G050010	Cucumber (Chinese Long) v2	cucuB007
Csa1G050010	Cucumber (Gy14) v1	cgycuB547