Csa1G049990 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G049990
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 5687352 .. 5687626 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTACAGTAAAGGTTTAGAAAGGCGGAAACTTTACGGCTTGAGCTTATCGCGCTAACGATTCCATATGTAGCCAAAGCTGAGCTAGTGAGCCCAATAGTAGGGAAGGCCGAATAGAAGCACGAACGGAGGACACGGCTTGGCGGAACGCCTCGGCTTCAACGGAGATGCGGCTCGGACTCTACCGGACGGAGATATTCGGCTTCAACTGAGAGGAAGCGGCGGCGAGCGGTGGACGGCGTCGGAACGAATGGCGGACGGAGATGGAGGTTGA

mRNA sequence

ATGGGTACAGTAAAGGGAAGGCCGAATAGAAGCACGAACGGAGGACACGGCTTGGCGGAACGCCTCGGCTTCAACGGAGATGCGGCTCGGACTCTACCGGACGGAGATATTCGGCTTCAACTGAGAGGAAGCGGCGGCGAGCGGTGGACGGCGTCGGAACGAATGGCGGACGGAGATGGAGGTTGA

Coding sequence (CDS)

ATGGGTACAGTAAAGGGAAGGCCGAATAGAAGCACGAACGGAGGACACGGCTTGGCGGAACGCCTCGGCTTCAACGGAGATGCGGCTCGGACTCTACCGGACGGAGATATTCGGCTTCAACTGAGAGGAAGCGGCGGCGAGCGGTGGACGGCGTCGGAACGAATGGCGGACGGAGATGGAGGTTGA

Protein sequence

MGTVKGRPNRSTNGGHGLAERLGFNGDAARTLPDGDIRLQLRGSGGERWTASERMADGDGG*
Homology
[Close]
BLAST of Csa1G049990 vs. TrEMBL
Match: A0A0A0LR19_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G049990 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 8.8e-28
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

Query: 1  MGTVKGRPNRSTNGGHGLAERLGFNGDAARTLPDGDIRLQLRGSGGERWTASERMADGDG 60
          MGTVKGRPNRSTNGGHGLAERLGFNGDAARTLPDGDIRLQLRGSGGERWTASERMADGDG
Sbjct: 1  MGTVKGRPNRSTNGGHGLAERLGFNGDAARTLPDGDIRLQLRGSGGERWTASERMADGDG 60

Query: 61 G 62
          G
Sbjct: 61 G 61

[Close]
BLAST of Csa1G049990 vs. NCBI nr
Match: gi|700209264|gb|KGN64360.1| (hypothetical protein Csa_1G049990 [Cucumis sativus])

HSP 1 Score: 130.2 bits (326), Expect = 1.3e-27
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

Query: 1  MGTVKGRPNRSTNGGHGLAERLGFNGDAARTLPDGDIRLQLRGSGGERWTASERMADGDG 60
          MGTVKGRPNRSTNGGHGLAERLGFNGDAARTLPDGDIRLQLRGSGGERWTASERMADGDG
Sbjct: 1  MGTVKGRPNRSTNGGHGLAERLGFNGDAARTLPDGDIRLQLRGSGGERWTASERMADGDG 60

Query: 61 G 62
          G
Sbjct: 61 G 61

The following BLAST results are available for this feature:
BLAST of Csa1G049990 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LR19_CUCSA8.8e-28100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G049990 PE=4 SV=1[more]
BLAST of Csa1G049990 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209264|gb|KGN64360.1|1.3e-27100.00hypothetical protein Csa_1G049990 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU161167cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G049990.1Csa1G049990.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU161167CU161167transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G049990CsGy1G009110Cucumber (Gy14) v2cgybcuB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G049990Cucurbita moschata (Rifu)cmocuB189
Csa1G049990Cucurbita moschata (Rifu)cmocuB380
Csa1G049990Melon (DHL92) v3.5.1cumeB027
Csa1G049990Watermelon (Charleston Gray)cuwcgB035
Csa1G049990Watermelon (Charleston Gray)cuwcgB089
Csa1G049990Watermelon (97103) v1cuwmB008
Csa1G049990Cucurbita pepo (Zucchini)cpecuB029
Csa1G049990Cucurbita pepo (Zucchini)cpecuB515
Csa1G049990Bottle gourd (USVL1VR-Ls)culsiB085
Csa1G049990Bottle gourd (USVL1VR-Ls)culsiB022
Csa1G049990Melon (DHL92) v3.6.1cumedB022
Csa1G049990Silver-seed gourdcarcuB0523
Csa1G049990Silver-seed gourdcarcuB1017
Csa1G049990Watermelon (97103) v2cuwmbB032
Csa1G049990Watermelon (97103) v2cuwmbB087
Csa1G049990Wax gourdcuwgoB030
Csa1G049990Cucumber (Chinese Long) v2cucuB007
Csa1G049990Cucumber (Gy14) v1cgycuB547
Csa1G049990Cucurbita maxima (Rimu)cmacuB204
Csa1G049990Cucurbita maxima (Rimu)cmacuB390