Csa1G049970 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G049970
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 5670513 .. 5670668 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCAACGAGACGTTACGAGAAGAAGAAGAAGAAGAAAGGCAAAGAAGAAGAAAAAAGGCAAGCAGTGGAACTCTTGGGTACAAGGAAGATGCGAGAAATAGGAAGGAAAATATAAGTTCAGAGTGGACTGACCTCCAGTGCAGGATCTTGTAA

mRNA sequence

ATGAGCAACGAGACGTTACGAGAAGAAGAAGAAGAAGAAAGGCAAAGAAGAAGAAAAAAGGCAAGCAGTGGAACTCTTGGGTACAAGGAAGATGCGAGAAATAGGAAGGAAAATATAAGTTCAGAGTGGACTGACCTCCAGTGCAGGATCTTGTAA

Coding sequence (CDS)

ATGAGCAACGAGACGTTACGAGAAGAAGAAGAAGAAGAAAGGCAAAGAAGAAGAAAAAAGGCAAGCAGTGGAACTCTTGGGTACAAGGAAGATGCGAGAAATAGGAAGGAAAATATAAGTTCAGAGTGGACTGACCTCCAGTGCAGGATCTTGTAA

Protein sequence

MSNETLREEEEEERQRRRKKASSGTLGYKEDARNRKENISSEWTDLQCRIL*
Homology
[Close]
BLAST of Csa1G049970 vs. TrEMBL
Match: A0A0A0LRD2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G049970 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.5e-20
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 

Query: 1  MSNETLREEEEEERQRRRKKASSGTLGYKEDARNRKENISSEWTDLQCRIL 52
          MSNETLREEEEEERQRRRKKASSGTLGYKEDARNRKENISSEWTDLQCRIL
Sbjct: 1  MSNETLREEEEEERQRRRKKASSGTLGYKEDARNRKENISSEWTDLQCRIL 51

[Close]
BLAST of Csa1G049970 vs. TrEMBL
Match: A0A0A0LMB9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G385040 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.2e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 

Query: 1  MSNETLREEEEEERQRRRKKASSGTLGYKEDARNRKENISSEWTDLQCR 50
          MSNETLREEEEEERQRRRKKASSGTLGYKEDARNRKENISSEWTDLQCR
Sbjct: 1  MSNETLREEEEEERQRRRKKASSGTLGYKEDARNRKENISSEWTDLQCR 49

[Close]
BLAST of Csa1G049970 vs. NCBI nr
Match: gi|700209262|gb|KGN64358.1| (hypothetical protein Csa_1G049970 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 3.6e-20
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 

Query: 1  MSNETLREEEEEERQRRRKKASSGTLGYKEDARNRKENISSEWTDLQCRIL 52
          MSNETLREEEEEERQRRRKKASSGTLGYKEDARNRKENISSEWTDLQCRIL
Sbjct: 1  MSNETLREEEEEERQRRRKKASSGTLGYKEDARNRKENISSEWTDLQCRIL 51

[Close]
BLAST of Csa1G049970 vs. NCBI nr
Match: gi|700207916|gb|KGN63035.1| (hypothetical protein Csa_2G385040 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 3.1e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 

Query: 1  MSNETLREEEEEERQRRRKKASSGTLGYKEDARNRKENISSEWTDLQCR 50
          MSNETLREEEEEERQRRRKKASSGTLGYKEDARNRKENISSEWTDLQCR
Sbjct: 1  MSNETLREEEEEERQRRRKKASSGTLGYKEDARNRKENISSEWTDLQCR 49

The following BLAST results are available for this feature:
BLAST of Csa1G049970 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRD2_CUCSA2.5e-20100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G049970 PE=4 SV=1[more]
A0A0A0LMB9_CUCSA2.2e-19100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G385040 PE=4 SV=1[more]
BLAST of Csa1G049970 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209262|gb|KGN64358.1|3.6e-20100.00hypothetical protein Csa_1G049970 [Cucumis sativus][more]
gi|700207916|gb|KGN63035.1|3.1e-19100.00hypothetical protein Csa_2G385040 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU161167cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G049970.1Csa1G049970.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU161167CU161167transcribed_cluster