Csa1G045850 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G045850
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 5173685 .. 5174116 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACCAAAGGCCTTGGATTTTTCTTCAACCTTTGAAGAAATCACAAAGCACCCAACAAAAATCATCATCATAATCATCATCATCATCACCATCATCATGTCCTCCTCCTCCTCCTCTTCCTTCATCATCATTACACCCTCACCCTCACCACCACCATCACCATTTCTTCTTCATCTTCTCTCTCCAAACCCTAATTCCCAATTAATCAATACTCTCATCATCAATGAAAAACAAGGGTTCTTTCTCTTCTTCTTCTTCTTCTTCTTCTTCACCAAAAGGAAGAAAAAACCCTAATCTTCATCTTCATCTTTTTTCCTTTTATGATCTCTTTTAATCAAAAAGAGATCGATCTCTCTTCATCCAAATCCCTCTCTCAACAAAAAGCTTGCTCTTTTGGGGAATCAAGCATCTTGGTCCGATGATTTTTGA

mRNA sequence

ATGGCACCAAAGGCCTTGGATTTTTCTTCAACCTTTGAAGAAATCACAAAGCACCCAACAAAAATCATCATCATAATCATCATCATCATCACCATCATCATGTCCTCCTCCTCCTCCTCTTCCTTCATCATCATTACACCCTCACCCTCACCACCACCATCACCATTTCTTCTTCATCTTCTCTCTCCAAACCCTAATTCCCAATTAATCAATACTCTCATCATCAATGAAAAACAAGGATCGATCTCTCTTCATCCAAATCCCTCTCTCAACAAAAAGCTTGCTCTTTTGGGGAATCAAGCATCTTGGTCCGATGATTTTTGA

Coding sequence (CDS)

ATGGCACCAAAGGCCTTGGATTTTTCTTCAACCTTTGAAGAAATCACAAAGCACCCAACAAAAATCATCATCATAATCATCATCATCATCACCATCATCATGTCCTCCTCCTCCTCCTCTTCCTTCATCATCATTACACCCTCACCCTCACCACCACCATCACCATTTCTTCTTCATCTTCTCTCTCCAAACCCTAATTCCCAATTAATCAATACTCTCATCATCAATGAAAAACAAGGATCGATCTCTCTTCATCCAAATCCCTCTCTCAACAAAAAGCTTGCTCTTTTGGGGAATCAAGCATCTTGGTCCGATGATTTTTGA

Protein sequence

MAPKALDFSSTFEEITKHPTKIIIIIIIIITIIMSSSSSSSFIIITPSPSPPPSPFLLHLLSPNPNSQLINTLIINEKQGSISLHPNPSLNKKLALLGNQASWSDDF*
Homology
[Close]
BLAST of Csa1G045850 vs. TrEMBL
Match: A0A0A0LU22_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G045850 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 5.2e-52
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 

Query: 1   MAPKALDFSSTFEEITKHPTKIIIIIIIIITIIMSSSSSSSFIIITPSPSPPPSPFLLHL 60
           MAPKALDFSSTFEEITKHPTKIIIIIIIIITIIMSSSSSSSFIIITPSPSPPPSPFLLHL
Sbjct: 1   MAPKALDFSSTFEEITKHPTKIIIIIIIIITIIMSSSSSSSFIIITPSPSPPPSPFLLHL 60

Query: 61  LSPNPNSQLINTLIINEKQGSISLHPNPSLNKKLALLGNQASWSDDF 108
           LSPNPNSQLINTLIINEKQGSISLHPNPSLNKKLALLGNQASWSDDF
Sbjct: 61  LSPNPNSQLINTLIINEKQGSISLHPNPSLNKKLALLGNQASWSDDF 107

[Close]
BLAST of Csa1G045850 vs. NCBI nr
Match: gi|700209191|gb|KGN64287.1| (hypothetical protein Csa_1G045850 [Cucumis sativus])

HSP 1 Score: 211.5 bits (537), Expect = 7.5e-52
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 

Query: 1   MAPKALDFSSTFEEITKHPTKIIIIIIIIITIIMSSSSSSSFIIITPSPSPPPSPFLLHL 60
           MAPKALDFSSTFEEITKHPTKIIIIIIIIITIIMSSSSSSSFIIITPSPSPPPSPFLLHL
Sbjct: 1   MAPKALDFSSTFEEITKHPTKIIIIIIIIITIIMSSSSSSSFIIITPSPSPPPSPFLLHL 60

Query: 61  LSPNPNSQLINTLIINEKQGSISLHPNPSLNKKLALLGNQASWSDDF 108
           LSPNPNSQLINTLIINEKQGSISLHPNPSLNKKLALLGNQASWSDDF
Sbjct: 61  LSPNPNSQLINTLIINEKQGSISLHPNPSLNKKLALLGNQASWSDDF 107

The following BLAST results are available for this feature:
BLAST of Csa1G045850 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LU22_CUCSA5.2e-52100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G045850 PE=4 SV=1[more]
BLAST of Csa1G045850 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209191|gb|KGN64287.1|7.5e-52100.00hypothetical protein Csa_1G045850 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU085890cucumber EST collection version 3.0transcribed_cluster
CU086363cucumber EST collection version 3.0transcribed_cluster
CU107550cucumber EST collection version 3.0transcribed_cluster
CU127987cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G045850.1Csa1G045850.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU107550CU107550transcribed_cluster
CU086363CU086363transcribed_cluster
CU127987CU127987transcribed_cluster
CU085890CU085890transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G045850Watermelon (97103) v2cuwmbB010
Csa1G045850Watermelon (97103) v2cuwmbB017
Csa1G045850Watermelon (97103) v2cuwmbB057
Csa1G045850Watermelon (97103) v2cuwmbB072
Csa1G045850Watermelon (97103) v2cuwmbB088
Csa1G045850Wax gourdcuwgoB002
Csa1G045850Wax gourdcuwgoB028
Csa1G045850Wax gourdcuwgoB068
Csa1G045850Wax gourdcuwgoB086
Csa1G045850Cucumber (Chinese Long) v2cucuB034
Csa1G045850Cucumber (Chinese Long) v2cucuB001
Csa1G045850Cucumber (Chinese Long) v2cucuB033
Csa1G045850Cucumber (Chinese Long) v2cucuB017
Csa1G045850Cucumber (Gy14) v1cgycuB226
Csa1G045850Cucumber (Gy14) v1cgycuB106
Csa1G045850Cucumber (Gy14) v1cgycuB301
Csa1G045850Cucumber (Gy14) v1cgycuB402
Csa1G045850Cucurbita maxima (Rimu)cmacuB066
Csa1G045850Cucurbita maxima (Rimu)cmacuB093
Csa1G045850Cucurbita maxima (Rimu)cmacuB217
Csa1G045850Cucurbita maxima (Rimu)cmacuB233
Csa1G045850Cucurbita maxima (Rimu)cmacuB390
Csa1G045850Cucurbita maxima (Rimu)cmacuB687
Csa1G045850Cucurbita moschata (Rifu)cmocuB057
Csa1G045850Cucurbita moschata (Rifu)cmocuB093
Csa1G045850Cucurbita moschata (Rifu)cmocuB202
Csa1G045850Cucurbita moschata (Rifu)cmocuB219
Csa1G045850Cucurbita moschata (Rifu)cmocuB380
Csa1G045850Cucurbita moschata (Rifu)cmocuB676
Csa1G045850Cucurbita moschata (Rifu)cmocuB680
Csa1G045850Melon (DHL92) v3.5.1cumeB005
Csa1G045850Melon (DHL92) v3.5.1cumeB007
Csa1G045850Melon (DHL92) v3.5.1cumeB027
Csa1G045850Melon (DHL92) v3.5.1cumeB046
Csa1G045850Melon (DHL92) v3.5.1cumeB067
Csa1G045850Watermelon (Charleston Gray)cuwcgB001
Csa1G045850Watermelon (Charleston Gray)cuwcgB021
Csa1G045850Watermelon (Charleston Gray)cuwcgB059
Csa1G045850Watermelon (Charleston Gray)cuwcgB073
Csa1G045850Watermelon (97103) v1cuwmB006
Csa1G045850Watermelon (97103) v1cuwmB000
Csa1G045850Watermelon (97103) v1cuwmB035
Csa1G045850Watermelon (97103) v1cuwmB041
Csa1G045850Watermelon (97103) v1cuwmB086
Csa1G045850Cucurbita pepo (Zucchini)cpecuB029
Csa1G045850Cucurbita pepo (Zucchini)cpecuB358
Csa1G045850Cucurbita pepo (Zucchini)cpecuB505
Csa1G045850Cucurbita pepo (Zucchini)cpecuB595
Csa1G045850Cucurbita pepo (Zucchini)cpecuB642
Csa1G045850Bottle gourd (USVL1VR-Ls)culsiB022
Csa1G045850Bottle gourd (USVL1VR-Ls)culsiB028
Csa1G045850Bottle gourd (USVL1VR-Ls)culsiB051
Csa1G045850Bottle gourd (USVL1VR-Ls)culsiB064
Csa1G045850Cucumber (Gy14) v2cgybcuB001
Csa1G045850Cucumber (Gy14) v2cgybcuB010
Csa1G045850Cucumber (Gy14) v2cgybcuB202
Csa1G045850Cucumber (Gy14) v2cgybcuB203
Csa1G045850Melon (DHL92) v3.6.1cumedB022
Csa1G045850Melon (DHL92) v3.6.1cumedB002
Csa1G045850Melon (DHL92) v3.6.1cumedB039
Csa1G045850Silver-seed gourdcarcuB0285
Csa1G045850Silver-seed gourdcarcuB0392
Csa1G045850Silver-seed gourdcarcuB0523
Csa1G045850Silver-seed gourdcarcuB0640
Csa1G045850Silver-seed gourdcarcuB1019