Csa1G041520 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G041520
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 4016464 .. 4016952 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTCGTTGTTGGGTTGGAAGTTGCATTAGAAAGGCTTGTAGGTTATGGGAATCATTAAAGGGTGAAGAAGAGAGTGGAGACAGCGGCGGCCATGGGGGGAGGAAACTGACGATGGTGGCGGAGATGGTGGAGGAATGGAAGGAGATGATAGTAGCATTGTGTGTATCATCAGCCATAGGGATAGCAACAGTGTCCGTTCAAATAGAAACAAATAAACAACTTCCGAAAACATTTCAGTTTCTATCCATTGTTGTGTTGCTTTGTTTTGGGTTCGTGGGGTTTGCAAAAATGACAAAACCCATTTTCAAAACAGTTTCAAAGATATTGTACTGTGTGGGAGGGTTTTTGGGTGTTACAGCCTTTTTCATAGCCACTGCCATTCCATTTGCTCCATACTTTCAGATCATTATCTTCATCCTTTACTTGCTCTTTTGTTTCATCTTCATGCTCATCACCACCATTCACAACCAACAACCTTCTTCCTGA

mRNA sequence

ATGTGTCGTTGTTGGGTTGGAAGTTGCATTAGAAAGGCTTGTAGGTTATGGGAATCATTAAAGGGTGAAGAAGAGAGTGGAGACAGCGGCGGCCATGGGGGGAGGAAACTGACGATGGTGGCGGAGATGGTGGAGGAATGGAAGGAGATGATAGTAGCATTGTGTGTATCATCAGCCATAGGGATAGCAACAGTGTCCGTTCAAATAGAAACAAATAAACAACTTCCGAAAACATTTCAGTTTCTATCCATTGTTGTGTTGCTTTGTTTTGGGTTCGTGGGGTTTGCAAAAATGACAAAACCCATTTTCAAAACAGTTTCAAAGATATTGTACTGTGTGGGAGGGTTTTTGGGTGTTACAGCCTTTTTCATAGCCACTGCCATTCCATTTGCTCCATACTTTCAGATCATTATCTTCATCCTTTACTTGCTCTTTTGTTTCATCTTCATGCTCATCACCACCATTCACAACCAACAACCTTCTTCCTGA

Coding sequence (CDS)

ATGTGTCGTTGTTGGGTTGGAAGTTGCATTAGAAAGGCTTGTAGGTTATGGGAATCATTAAAGGGTGAAGAAGAGAGTGGAGACAGCGGCGGCCATGGGGGGAGGAAACTGACGATGGTGGCGGAGATGGTGGAGGAATGGAAGGAGATGATAGTAGCATTGTGTGTATCATCAGCCATAGGGATAGCAACAGTGTCCGTTCAAATAGAAACAAATAAACAACTTCCGAAAACATTTCAGTTTCTATCCATTGTTGTGTTGCTTTGTTTTGGGTTCGTGGGGTTTGCAAAAATGACAAAACCCATTTTCAAAACAGTTTCAAAGATATTGTACTGTGTGGGAGGGTTTTTGGGTGTTACAGCCTTTTTCATAGCCACTGCCATTCCATTTGCTCCATACTTTCAGATCATTATCTTCATCCTTTACTTGCTCTTTTGTTTCATCTTCATGCTCATCACCACCATTCACAACCAACAACCTTCTTCCTGA

Protein sequence

MCRCWVGSCIRKACRLWESLKGEEESGDSGGHGGRKLTMVAEMVEEWKEMIVALCVSSAIGIATVSVQIETNKQLPKTFQFLSIVVLLCFGFVGFAKMTKPIFKTVSKILYCVGGFLGVTAFFIATAIPFAPYFQIIIFILYLLFCFIFMLITTIHNQQPSS*
Homology
[Close]
BLAST of Csa1G041520 vs. TrEMBL
Match: A0A0A0LQB6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G041520 PE=4 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 6.8e-88
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 1 

Query: 1   MCRCWVGSCIRKACRLWESLKGEEESGDSGGHGGRKLTMVAEMVEEWKEMIVALCVSSAI 60
           MCRCWVGSCIRKACRLWESLKGEEESGDSGGHGGRKLTMVAEMVEEWKEMIVALCVSSAI
Sbjct: 1   MCRCWVGSCIRKACRLWESLKGEEESGDSGGHGGRKLTMVAEMVEEWKEMIVALCVSSAI 60

Query: 61  GIATVSVQIETNKQLPKTFQFLSIVVLLCFGFVGFAKMTKPIFKTVSKILYCVGGFLGVT 120
           GIATVSVQIETNKQLPKTFQFLSIVVLLCFGFVGFAKMTKPIFKTVSKILYCVGGFLGVT
Sbjct: 61  GIATVSVQIETNKQLPKTFQFLSIVVLLCFGFVGFAKMTKPIFKTVSKILYCVGGFLGVT 120

Query: 121 AFFIATAIPFAPYFQIIIFILYLLFCFIFMLITTIHNQQPSS 163
           AFFIATAIPFAPYFQIIIFILYLLFCFIFMLITTIHNQQPSS
Sbjct: 121 AFFIATAIPFAPYFQIIIFILYLLFCFIFMLITTIHNQQPSS 162

[Close]
BLAST of Csa1G041520 vs. TrEMBL
Match: A0A0A0LCY2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G851175 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 3.3e-34
Identity = 85/135 (62.96%), Postives = 101/135 (74.81%), Query Frame = 1 

Query: 32  HGG--RKLTMVAEMVEEWKEMIVALCVSSAIGIATVSVQIETNKQLPKTFQFLSIVVLLC 91
           +GG  R L +VAEMVEE KEMI+  C+SSAIGIATVSVQ +T  +LP +FQFLSI VL+C
Sbjct: 17  YGGVRRSLEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKT--KLPNSFQFLSIAVLIC 76

Query: 92  FGFVGFAKMTKPIFKTVSKILYCVGGFLGVTAFFIATAIPFAPYFQIIIFILYLLFCFIF 151
           F  VGFA+M   IFKT+SKILYC GGFL  T  FIATAIP+  +F II+ +LY +FC IF
Sbjct: 77  FLSVGFARMISSIFKTLSKILYCFGGFLCATCCFIATAIPYDTHFHIIVIVLYSIFCIIF 136

Query: 152 -MLITTIHN-QQPSS 163
            MLI+  HN   PSS
Sbjct: 137 VMLISITHNPSSPSS 149

[Close]
BLAST of Csa1G041520 vs. TrEMBL
Match: A0A0A0LQP5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G040510 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.3e-25
Identity = 69/132 (52.27%), Postives = 92/132 (69.70%), Query Frame = 1 

Query: 35  RKLTMVAEMVEEWKEMIVALCVSSAIGIATVSVQIETNKQLPKTFQFLSIVVLLCFGFVG 94
           R L +VAE VEE KE I+ LCVSSAIGI T SVQI+T  +LP +FQ LS+ +LLCF  V 
Sbjct: 24  RSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKT--KLPNSFQCLSMPILLCFVSVV 83

Query: 95  FAKMTKPIFKTVSKILYCVGGFLGVTAFFIATAIPF-APYFQIIIFILYLLF---CFIFM 154
           FA+M + +F+T+S+ILYCVG F+  T  FIATAI +   +F  I+ +LY +F   C IF+
Sbjct: 84  FARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDAHFHTIVIVLYSIFCIICIIFI 143

Query: 155 LITTIHNQQPSS 163
           +  +I +  PSS
Sbjct: 144 IFISITHNDPSS 153

[Close]
BLAST of Csa1G041520 vs. TrEMBL
Match: A0A0A0LSX4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G040520 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 3.7e-25
Identity = 66/105 (62.86%), Postives = 79/105 (75.24%), Query Frame = 1 

Query: 32  HGG--RKLTMVAEMVEEWKEMIVALCVSSAIGIATVSVQIETNKQLPKTFQFLSIVVLLC 91
           +GG  R   + AEMVEEWK+MI+  CVSSAIGIATVSV I+T  +LP +FQ LSI VLLC
Sbjct: 16  YGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKT--ELPNSFQLLSIAVLLC 75

Query: 92  FGFVGFAKMTKPIFKTVSKILYCVGGFLGVTAFFIATAIPFAPYF 135
           F  V FA+M   IF+T+SKILYCVGG L  ++ FIATAIP+A  F
Sbjct: 76  FVSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPYASSF 118

[Close]
BLAST of Csa1G041520 vs. TrEMBL
Match: A0A0A0LEV1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000430 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.7e-12
Identity = 44/124 (35.48%), Postives = 72/124 (58.06%), Query Frame = 1 

Query: 39  MVAEMVEEWKEMIVALCVSSAIGIATVSVQIETNKQLPKTFQFLSIVVLLCFGFVGFAKM 98
           +VA+MVEE K  I+    +    IA +SVQ +   +LP +F+F+SI  LLC      A +
Sbjct: 12  VVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKA--KLPDSFEFVSITSLLCLLCFVSAMI 71

Query: 99  TKPIFKTVSKILYCVGGFLGVTAFFIATAIPFAPYFQIIIFILYLLFCFIFMLITTIHNQ 158
               FKT +K+LY +G F  +T++ IA AIP   YF +++ +L+L+ C   +++ +    
Sbjct: 72  IDFSFKTFAKVLYFLGAFFCMTSYLIAAAIPSQMYFHVLLILLFLISCITLVILMSNTCS 131

Query: 159 QPSS 163
            P+S
Sbjct: 132 PPNS 133

[Close]
BLAST of Csa1G041520 vs. NCBI nr
Match: gi|700208994|gb|KGN64090.1| (hypothetical protein Csa_1G041520 [Cucumis sativus])

HSP 1 Score: 331.3 bits (848), Expect = 9.8e-88
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 1 

Query: 1   MCRCWVGSCIRKACRLWESLKGEEESGDSGGHGGRKLTMVAEMVEEWKEMIVALCVSSAI 60
           MCRCWVGSCIRKACRLWESLKGEEESGDSGGHGGRKLTMVAEMVEEWKEMIVALCVSSAI
Sbjct: 1   MCRCWVGSCIRKACRLWESLKGEEESGDSGGHGGRKLTMVAEMVEEWKEMIVALCVSSAI 60

Query: 61  GIATVSVQIETNKQLPKTFQFLSIVVLLCFGFVGFAKMTKPIFKTVSKILYCVGGFLGVT 120
           GIATVSVQIETNKQLPKTFQFLSIVVLLCFGFVGFAKMTKPIFKTVSKILYCVGGFLGVT
Sbjct: 61  GIATVSVQIETNKQLPKTFQFLSIVVLLCFGFVGFAKMTKPIFKTVSKILYCVGGFLGVT 120

Query: 121 AFFIATAIPFAPYFQIIIFILYLLFCFIFMLITTIHNQQPSS 163
           AFFIATAIPFAPYFQIIIFILYLLFCFIFMLITTIHNQQPSS
Sbjct: 121 AFFIATAIPFAPYFQIIIFILYLLFCFIFMLITTIHNQQPSS 162

[Close]
BLAST of Csa1G041520 vs. NCBI nr
Match: gi|700204732|gb|KGN59865.1| (hypothetical protein Csa_3G851175 [Cucumis sativus])

HSP 1 Score: 152.9 bits (385), Expect = 4.8e-34
Identity = 85/135 (62.96%), Postives = 101/135 (74.81%), Query Frame = 1 

Query: 32  HGG--RKLTMVAEMVEEWKEMIVALCVSSAIGIATVSVQIETNKQLPKTFQFLSIVVLLC 91
           +GG  R L +VAEMVEE KEMI+  C+SSAIGIATVSVQ +T  +LP +FQFLSI VL+C
Sbjct: 17  YGGVRRSLEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKT--KLPNSFQFLSIAVLIC 76

Query: 92  FGFVGFAKMTKPIFKTVSKILYCVGGFLGVTAFFIATAIPFAPYFQIIIFILYLLFCFIF 151
           F  VGFA+M   IFKT+SKILYC GGFL  T  FIATAIP+  +F II+ +LY +FC IF
Sbjct: 77  FLSVGFARMISSIFKTLSKILYCFGGFLCATCCFIATAIPYDTHFHIIVIVLYSIFCIIF 136

Query: 152 -MLITTIHN-QQPSS 163
            MLI+  HN   PSS
Sbjct: 137 VMLISITHNPSSPSS 149

[Close]
BLAST of Csa1G041520 vs. NCBI nr
Match: gi|700208992|gb|KGN64088.1| (hypothetical protein Csa_1G040510 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 1.8e-25
Identity = 69/132 (52.27%), Postives = 92/132 (69.70%), Query Frame = 1 

Query: 35  RKLTMVAEMVEEWKEMIVALCVSSAIGIATVSVQIETNKQLPKTFQFLSIVVLLCFGFVG 94
           R L +VAE VEE KE I+ LCVSSAIGI T SVQI+T  +LP +FQ LS+ +LLCF  V 
Sbjct: 24  RSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKT--KLPNSFQCLSMPILLCFVSVV 83

Query: 95  FAKMTKPIFKTVSKILYCVGGFLGVTAFFIATAIPF-APYFQIIIFILYLLF---CFIFM 154
           FA+M + +F+T+S+ILYCVG F+  T  FIATAI +   +F  I+ +LY +F   C IF+
Sbjct: 84  FARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDAHFHTIVIVLYSIFCIICIIFI 143

Query: 155 LITTIHNQQPSS 163
           +  +I +  PSS
Sbjct: 144 IFISITHNDPSS 153

[Close]
BLAST of Csa1G041520 vs. NCBI nr
Match: gi|700208993|gb|KGN64089.1| (hypothetical protein Csa_1G040520 [Cucumis sativus])

HSP 1 Score: 122.9 bits (307), Expect = 5.3e-25
Identity = 66/105 (62.86%), Postives = 79/105 (75.24%), Query Frame = 1 

Query: 32  HGG--RKLTMVAEMVEEWKEMIVALCVSSAIGIATVSVQIETNKQLPKTFQFLSIVVLLC 91
           +GG  R   + AEMVEEWK+MI+  CVSSAIGIATVSV I+T  +LP +FQ LSI VLLC
Sbjct: 16  YGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKT--ELPNSFQLLSIAVLLC 75

Query: 92  FGFVGFAKMTKPIFKTVSKILYCVGGFLGVTAFFIATAIPFAPYF 135
           F  V FA+M   IF+T+SKILYCVGG L  ++ FIATAIP+A  F
Sbjct: 76  FVSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPYASSF 118

[Close]
BLAST of Csa1G041520 vs. NCBI nr
Match: gi|700205416|gb|KGN60535.1| (hypothetical protein Csa_2G000430 [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 6.7e-12
Identity = 44/124 (35.48%), Postives = 72/124 (58.06%), Query Frame = 1 

Query: 39  MVAEMVEEWKEMIVALCVSSAIGIATVSVQIETNKQLPKTFQFLSIVVLLCFGFVGFAKM 98
           +VA+MVEE K  I+    +    IA +SVQ +   +LP +F+F+SI  LLC      A +
Sbjct: 12  VVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKA--KLPDSFEFVSITSLLCLLCFVSAMI 71

Query: 99  TKPIFKTVSKILYCVGGFLGVTAFFIATAIPFAPYFQIIIFILYLLFCFIFMLITTIHNQ 158
               FKT +K+LY +G F  +T++ IA AIP   YF +++ +L+L+ C   +++ +    
Sbjct: 72  IDFSFKTFAKVLYFLGAFFCMTSYLIAAAIPSQMYFHVLLILLFLISCITLVILMSNTCS 131

Query: 159 QPSS 163
            P+S
Sbjct: 132 PPNS 133

The following BLAST results are available for this feature:
BLAST of Csa1G041520 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQB6_CUCSA6.8e-88100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G041520 PE=4 SV=1[more]
A0A0A0LCY2_CUCSA3.3e-3462.96Uncharacterized protein OS=Cucumis sativus GN=Csa_3G851175 PE=4 SV=1[more]
A0A0A0LQP5_CUCSA1.3e-2552.27Uncharacterized protein OS=Cucumis sativus GN=Csa_1G040510 PE=4 SV=1[more]
A0A0A0LSX4_CUCSA3.7e-2562.86Uncharacterized protein OS=Cucumis sativus GN=Csa_1G040520 PE=4 SV=1[more]
A0A0A0LEV1_CUCSA4.7e-1235.48Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000430 PE=4 SV=1[more]
BLAST of Csa1G041520 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208994|gb|KGN64090.1|9.8e-88100.00hypothetical protein Csa_1G041520 [Cucumis sativus][more]
gi|700204732|gb|KGN59865.1|4.8e-3462.96hypothetical protein Csa_3G851175 [Cucumis sativus][more]
gi|700208992|gb|KGN64088.1|1.8e-2552.27hypothetical protein Csa_1G040510 [Cucumis sativus][more]
gi|700208993|gb|KGN64089.1|5.3e-2562.86hypothetical protein Csa_1G040520 [Cucumis sativus][more]
gi|700205416|gb|KGN60535.1|6.7e-1235.48hypothetical protein Csa_2G000430 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G041520.1Csa1G041520.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G041520Cucumber (Gy14) v2cgybcuB001
Csa1G041520Cucumber (Gy14) v2cgybcuB004
Csa1G041520Cucumber (Gy14) v2cgybcuB013
Csa1G041520Melon (DHL92) v3.6.1cumedB022
Csa1G041520Melon (DHL92) v3.6.1cumedB048
Csa1G041520Silver-seed gourdcarcuB0415
Csa1G041520Silver-seed gourdcarcuB0492
Csa1G041520Silver-seed gourdcarcuB0539
Csa1G041520Silver-seed gourdcarcuB0542
Csa1G041520Silver-seed gourdcarcuB0623
Csa1G041520Watermelon (97103) v2cuwmbB054
Csa1G041520Watermelon (97103) v2cuwmbB080
Csa1G041520Wax gourdcuwgoB050
Csa1G041520Wax gourdcuwgoB106
Csa1G041520Cucumber (Chinese Long) v2cucuB000
Csa1G041520Cucumber (Chinese Long) v2cucuB003
Csa1G041520Cucumber (Gy14) v1cgycuB137
Csa1G041520Cucumber (Gy14) v1cgycuB302
Csa1G041520Cucurbita maxima (Rimu)cmacuB069
Csa1G041520Cucurbita maxima (Rimu)cmacuB088
Csa1G041520Cucurbita maxima (Rimu)cmacuB217
Csa1G041520Cucurbita maxima (Rimu)cmacuB405
Csa1G041520Cucurbita maxima (Rimu)cmacuB390
Csa1G041520Cucurbita moschata (Rifu)cmocuB059
Csa1G041520Cucurbita moschata (Rifu)cmocuB077
Csa1G041520Cucurbita moschata (Rifu)cmocuB202
Csa1G041520Cucurbita moschata (Rifu)cmocuB380
Csa1G041520Cucurbita moschata (Rifu)cmocuB394
Csa1G041520Melon (DHL92) v3.5.1cumeB027
Csa1G041520Melon (DHL92) v3.5.1cumeB056
Csa1G041520Watermelon (Charleston Gray)cuwcgB057
Csa1G041520Watermelon (Charleston Gray)cuwcgB083
Csa1G041520Watermelon (97103) v1cuwmB062
Csa1G041520Watermelon (97103) v1cuwmB096
Csa1G041520Cucurbita pepo (Zucchini)cpecuB023
Csa1G041520Cucurbita pepo (Zucchini)cpecuB029
Csa1G041520Cucurbita pepo (Zucchini)cpecuB357
Csa1G041520Cucurbita pepo (Zucchini)cpecuB505
Csa1G041520Cucurbita pepo (Zucchini)cpecuB655
Csa1G041520Bottle gourd (USVL1VR-Ls)culsiB022
Csa1G041520Bottle gourd (USVL1VR-Ls)culsiB072