Csa1G039870 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G039870
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 3928985 .. 3929352 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGAAAAACGAAAAGCCAGCGTGGAAAAATTGGCATTAACTACGGGGAATGAAGATGACGTGTGAGGAGAAAGTTAAGGAATTAGGTAAGTACGTGGTGGCCGACCCTCCACCTCCACATCTGGACCGGACTCCTTCAAAGCCGCCGGTGGCCAACTTGGCCGTACCATCTGAAAACAATTTTCCCATTGATTAATAAATGCTATTATTTCTTAAATATATTAGCCGTACACGTGGTGGCGTACGGACGACGGTGCATATGTTTAACAAAACCGCTAAATTACTAAACGGCGTCGTTTTCACGAGTATGCTTTGAACCTTAACCGACGCCGACCGGTGGTTTCGCTTTCCGTTTCTAATTCCGACTAA

mRNA sequence

ATGAAGATGACGTGTGAGGAGAAAGTTAAGGAATTAGGTAAGTACGTGGTGGCCGACCCTCCACCTCCACATCTGGACCGGACTCCTTCAAAGCCGCCGGTGGCCAACTTGGCCTATGCTTTGAACCTTAACCGACGCCGACCGGTGGTTTCGCTTTCCGTTTCTAATTCCGACTAA

Coding sequence (CDS)

ATGAAGATGACGTGTGAGGAGAAAGTTAAGGAATTAGGTAAGTACGTGGTGGCCGACCCTCCACCTCCACATCTGGACCGGACTCCTTCAAAGCCGCCGGTGGCCAACTTGGCCTATGCTTTGAACCTTAACCGACGCCGACCGGTGGTTTCGCTTTCCGTTTCTAATTCCGACTAA

Protein sequence

MKMTCEEKVKELGKYVVADPPPPHLDRTPSKPPVANLAYALNLNRRRPVVSLSVSNSD*
Homology
[Close]
BLAST of Csa1G039870 vs. TrEMBL
Match: A0A0A0LQN6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G039870 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 3.9e-25
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1 

Query: 1  MKMTCEEKVKELGKYVVADPPPPHLDRTPSKPPVANLAYALNLNRRRPVVSLSVSNSD 59
          MKMTCEEKVKELGKYVVADPPPPHLDRTPSKPPVANLAYALNLNRRRPVVSLSVSNSD
Sbjct: 1  MKMTCEEKVKELGKYVVADPPPPHLDRTPSKPPVANLAYALNLNRRRPVVSLSVSNSD 58

[Close]
BLAST of Csa1G039870 vs. NCBI nr
Match: gi|700208977|gb|KGN64073.1| (hypothetical protein Csa_1G039870 [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 5.6e-25
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1 

Query: 1  MKMTCEEKVKELGKYVVADPPPPHLDRTPSKPPVANLAYALNLNRRRPVVSLSVSNSD 59
          MKMTCEEKVKELGKYVVADPPPPHLDRTPSKPPVANLAYALNLNRRRPVVSLSVSNSD
Sbjct: 1  MKMTCEEKVKELGKYVVADPPPPHLDRTPSKPPVANLAYALNLNRRRPVVSLSVSNSD 58

The following BLAST results are available for this feature:
BLAST of Csa1G039870 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQN6_CUCSA3.9e-25100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G039870 PE=4 SV=1[more]
BLAST of Csa1G039870 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208977|gb|KGN64073.1|5.6e-25100.00hypothetical protein Csa_1G039870 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G039870.1Csa1G039870.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G039870CSPI01G06310Wild cucumber (PI 183967)cpicuB000
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G039870Wax gourdcuwgoB050
Csa1G039870Wax gourdcuwgoB069
Csa1G039870Wax gourdcuwgoB106
Csa1G039870Cucumber (Chinese Long) v2cucuB000
Csa1G039870Cucumber (Chinese Long) v2cucuB003
Csa1G039870Cucumber (Chinese Long) v2cucuB027
Csa1G039870Cucumber (Chinese Long) v2cucuB028
Csa1G039870Cucumber (Chinese Long) v2cucuB037
Csa1G039870Cucumber (Gy14) v1cgycuB137
Csa1G039870Cucumber (Gy14) v1cgycuB300
Csa1G039870Cucumber (Gy14) v1cgycuB302
Csa1G039870Cucumber (Gy14) v1cgycuB403
Csa1G039870Cucurbita maxima (Rimu)cmacuB069
Csa1G039870Cucurbita maxima (Rimu)cmacuB088
Csa1G039870Cucurbita maxima (Rimu)cmacuB217
Csa1G039870Cucurbita maxima (Rimu)cmacuB390
Csa1G039870Cucurbita maxima (Rimu)cmacuB403
Csa1G039870Cucurbita maxima (Rimu)cmacuB430
Csa1G039870Cucurbita maxima (Rimu)cmacuB684
Csa1G039870Cucurbita moschata (Rifu)cmocuB059
Csa1G039870Cucurbita moschata (Rifu)cmocuB077
Csa1G039870Cucurbita moschata (Rifu)cmocuB202
Csa1G039870Cucurbita moschata (Rifu)cmocuB380
Csa1G039870Cucurbita moschata (Rifu)cmocuB391
Csa1G039870Cucurbita moschata (Rifu)cmocuB420
Csa1G039870Cucurbita moschata (Rifu)cmocuB674
Csa1G039870Melon (DHL92) v3.5.1cumeB008
Csa1G039870Melon (DHL92) v3.5.1cumeB027
Csa1G039870Melon (DHL92) v3.5.1cumeB056
Csa1G039870Watermelon (Charleston Gray)cuwcgB057
Csa1G039870Watermelon (Charleston Gray)cuwcgB061
Csa1G039870Watermelon (Charleston Gray)cuwcgB083
Csa1G039870Watermelon (Charleston Gray)cuwcgB088
Csa1G039870Watermelon (97103) v1cuwmB034
Csa1G039870Watermelon (97103) v1cuwmB038
Csa1G039870Watermelon (97103) v1cuwmB062
Csa1G039870Watermelon (97103) v1cuwmB096
Csa1G039870Cucurbita pepo (Zucchini)cpecuB026
Csa1G039870Cucurbita pepo (Zucchini)cpecuB029
Csa1G039870Cucurbita pepo (Zucchini)cpecuB357
Csa1G039870Cucurbita pepo (Zucchini)cpecuB379
Csa1G039870Cucurbita pepo (Zucchini)cpecuB505
Csa1G039870Cucurbita pepo (Zucchini)cpecuB655
Csa1G039870Bottle gourd (USVL1VR-Ls)culsiB022
Csa1G039870Bottle gourd (USVL1VR-Ls)culsiB053
Csa1G039870Bottle gourd (USVL1VR-Ls)culsiB072
Csa1G039870Bottle gourd (USVL1VR-Ls)culsiB083
Csa1G039870Cucumber (Gy14) v2cgybcuB001
Csa1G039870Cucumber (Gy14) v2cgybcuB004
Csa1G039870Cucumber (Gy14) v2cgybcuB013
Csa1G039870Cucumber (Gy14) v2cgybcuB157
Csa1G039870Cucumber (Gy14) v2cgybcuB197
Csa1G039870Melon (DHL92) v3.6.1cumedB022
Csa1G039870Melon (DHL92) v3.6.1cumedB003
Csa1G039870Melon (DHL92) v3.6.1cumedB048
Csa1G039870Melon (DHL92) v3.6.1cumedB056
Csa1G039870Melon (DHL92) v3.6.1cumedB073
Csa1G039870Silver-seed gourdcarcuB0106
Csa1G039870Silver-seed gourdcarcuB0269
Csa1G039870Silver-seed gourdcarcuB0415
Csa1G039870Silver-seed gourdcarcuB0492
Csa1G039870Silver-seed gourdcarcuB0542
Csa1G039870Silver-seed gourdcarcuB0623
Csa1G039870Watermelon (97103) v2cuwmbB086
Csa1G039870Watermelon (97103) v2cuwmbB054
Csa1G039870Watermelon (97103) v2cuwmbB059
Csa1G039870Watermelon (97103) v2cuwmbB080