Csa1G038970 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G038970
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein; contains IPR017451 (F-box associated interaction domain)
LocationChr1 : 3692104 .. 3694248 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGTCGGAGAAACTTAATCAAATCGAGGAGGAAGTTCAGAAATCTTTCTGCATTTACATCATTGACTACCTCCATTTCCATTCTCTTCCCAACATTTTGGCAGGGATGCTGCTGCTGCTTGATTCTTGTATCCATCCTCCTTTCTTGCTTGATTTTTATCTTTCAATTACTTTTATTTATTTCTATTGATGCATATAATTAATTTGGACAGTCTCATCTCCAAGTGGTTCATCCATTGGTGTCTGAACGTAAAAGATTGAGAAAATCTGTTGTTCTCCATTTGGAGTTAAGGGACCATAATTTGAAGAAATTTCTTGGAGTTCAACTACATATTAATGAACAGATATTTAATGGCAGACCATATCTAACAACTTATGGTCAACAATTTAAACTAATTCGTATAAATATTTGATATTTTTTAAAAAAAATTGACCATTTCTCATAATATAATTCATTAAGATTTAGAAACGTATATGCCAAAATATACAAATTGTTGAGAAGTCAGCAAATTTTCAGGAAGCTAAATCGAGAAGCTAAGTAGCTTCACTTTTTAAAAGTGATTTTGATAGATTAATAATAATTTAGTTTGTATGATTTCCCATAATCACTTTCTAAACGAGGCTGACGCCGACGCCGTAGACTGCATTGATTTTTCTACCTTAGCTCTTGTTGTTAACGATTGGTATGCTTCTAATCTCCATTTCTGTCTTTCTTCTCAATACCCGAATAACAAAGTAAAACAAAAAATATTATCCTTACGGAAAATTGGGATTGGGGTGTGATTTGTTTGGTTGTTCCGATTCCATTTTGATTTGTGGCATCTGTTTGAGTCTTTGATCATATGTATATTGATCTCTTCAGCCTTAGCTGTAAATTTATATGAATTTATCAGAGAATGAGACAACAAGTAATCCAGTTTCATTCTCTTTCCATTGATTATATTTGTATATTTGTTTTCCAAGGTTGAAGTAGATGGGGAAGAAGTGGAACAGCAAGAGCATAATAGATTCAGAGCTTCCATCCGATATTCTTCTCCAAATATTGTTGAAGCTTCAACCATTTTCCAATTTATTCACTTGCAGGCTAGTGAGTAAAGTTTGGAACGATTGCATTTCAAGTTTTAAGTTTGAGTCCAACCTTTTCATTACCCAAATTTCTCCTAGTCGTAATCGTAGACGTAATCGTAATCGCTTTGACTGTGTGGACTTGGATCCTAAACATTTTGATGGGATGAATCTTATTGGGTCATTTAAGTTGCATTCTTCATGGTGCTCCTCCTCTACTGGAATTGTCAATAGTTGTAATGGATTTCTTTGTATCTTGAATACCAAACGTGTTGCAATGTTAAATCCTATGACAAATGAGTACATGGAGCTTCCGAGTAGTACTCAATATGAGTTGTCCGTTTATGGACTTGGTTATAGTCCCAAGACAAAGGGGTACAAAGTAGGAAGACATTCGTACAAAAATGGTGAGTTGTTAGTAGAGATTTTAGCATTTGGCACAAGTTTGGAGGATCAAGATGGGAAGGTTCAAAGTCAATGGAGACAGGTAGCTAGCATGAGTACAACCTATAAAATGTATCGCCATGGTACTTACTTTTACAACCTATAAAATGTATGGTACTTACTTTAACGGAGCCATCTATTGGGTTGGGGAAGAAGAGAAGTTTGATTCATCAGCAAAAAATGTGTATGTGTTGTGGCGTTTGAACGTAGCAAATGAGAAATTTGAAGAACTTTGGCTTCCTGAAACTGGAGCTATTTGGAAACATACTTCTTACTGTGGAGTGTTTAATGGAAAATTGTATATAAGTCATTACGTGACAGCGGATTCTAAGTACCATGTGTTGATGATGAATGGAAAAGGATTGTGGGAGTTACCATTTTTTATTAACATACCAAGGTTTTACAAAGGTTCAACACGTCTTGATTCCTATCACTTTCAACTCATCAAACCTTGGAAGGATGGAAAGATTCTGTGTCTTTTTTACTCGTTTCTTTTAGTCTTGTATGATACCAAGACAAGGAAGTTGGAGAAACTACATCAGGTCAAGGGGATAGTTAAGAGATCATTTCGCATTTGTCAAATGGACTCCATCCATTTTGATTCTCTCCCCAACATTTTGGCAGGGAATTAG

mRNA sequence

ATGGGAAGTCGGAGAAACTTAATCAAATCGAGGAGGAAGTTCAGAAATCTTTCTGCATTTACATCATTGACTACCTCCATTTCCATTCTCTTCCCAACATTTTGGCAGGGATGCTGCTGCTGCTTGATTCTTTCTCATCTCCAAGTGGTTCATCCATTGGTGTCTGAACGTAAAAGATTGAGAAAATCTGTTGTTCTCCATTTGGAGTTAAGGGACCATAATTTGAAGAAATTTCTTGGAGCTGACGCCGACGCCGTAGACTGCATTGATTTTTCTACCTTAGCTCTTGTTGTTAACGATTGGTATGCTTCTAATCTCCATTTCTGTCTTTCTTCTCAATACCCGAATAACAAAGTTGAAGTAGATGGGGAAGAAGTGGAACAGCAAGAGCATAATAGATTCAGAGCTTCCATCCGATATTCTTCTCCAAATATTGTTGAAGCTTCAACCATTTTCCAATTTATTCACTTGCAGGCTAGTGAACGTAATCGTAATCGCTTTGACTGTGTGGACTTGGATCCTAAACATTTTGATGGGATGAATCTTATTGGGTCATTTAAGTTGCATTCTTCATGGTGCTCCTCCTCTACTGGAATTGTCAATAGTTGTAATGGATTTCTTTGTATCTTGAATACCAAACGTGTTGCAATGTTAAATCCTATGACAAATGAGTACATGGAGCTTCCGAGTAGTACTCAATATGAGTTGTCCGTTTATGGACTTGGTTATAGTCCCAAGACAAAGGGGTACAAAGTAGGAAGACATTCGTACAAAAATGGTGAGTTGTTAGTAGAGATTTTAGCATTTGGCACAAGTTTGGAGGATCAAGATGGGAAGGTTCAAAGTCAATGGAGACAGGTAGCTAGCATGAGTACAACCTATAAAATGTATCGCCATGCAAATGAGAAATTTGAAGAACTTTGGCTTCCTGAAACTGGAGCTATTTGGAAACATACTTCTTACTGTGGAGTGTTTAATGGAAAATTGTATATAAGTCATTACGTGACAGCGGATTCTAAGTACCATGTGTTGATGATGAATGGAAAAGGATTGTGGGAGTTACCATTTTTTATTAACATACCAAGGTTTTACAAAGGTTCAACACGTCTTGATTCCTATCACTTTCAACTCATCAAACCTTGGAAGGATGGAAAGATTCTGTGTCTTTTTTACTCGTTTCTTTTAGTCTTGTATGATACCAAGACAAGGAAGTTGGAGAAACTACATCAGGTCAAGGGGATAGTTAAGAGATCATTTCGCATTTGTCAAATGGACTCCATCCATTTTGATTCTCTCCCCAACATTTTGGCAGGGAATTAG

Coding sequence (CDS)

ATGGGAAGTCGGAGAAACTTAATCAAATCGAGGAGGAAGTTCAGAAATCTTTCTGCATTTACATCATTGACTACCTCCATTTCCATTCTCTTCCCAACATTTTGGCAGGGATGCTGCTGCTGCTTGATTCTTTCTCATCTCCAAGTGGTTCATCCATTGGTGTCTGAACGTAAAAGATTGAGAAAATCTGTTGTTCTCCATTTGGAGTTAAGGGACCATAATTTGAAGAAATTTCTTGGAGCTGACGCCGACGCCGTAGACTGCATTGATTTTTCTACCTTAGCTCTTGTTGTTAACGATTGGTATGCTTCTAATCTCCATTTCTGTCTTTCTTCTCAATACCCGAATAACAAAGTTGAAGTAGATGGGGAAGAAGTGGAACAGCAAGAGCATAATAGATTCAGAGCTTCCATCCGATATTCTTCTCCAAATATTGTTGAAGCTTCAACCATTTTCCAATTTATTCACTTGCAGGCTAGTGAACGTAATCGTAATCGCTTTGACTGTGTGGACTTGGATCCTAAACATTTTGATGGGATGAATCTTATTGGGTCATTTAAGTTGCATTCTTCATGGTGCTCCTCCTCTACTGGAATTGTCAATAGTTGTAATGGATTTCTTTGTATCTTGAATACCAAACGTGTTGCAATGTTAAATCCTATGACAAATGAGTACATGGAGCTTCCGAGTAGTACTCAATATGAGTTGTCCGTTTATGGACTTGGTTATAGTCCCAAGACAAAGGGGTACAAAGTAGGAAGACATTCGTACAAAAATGGTGAGTTGTTAGTAGAGATTTTAGCATTTGGCACAAGTTTGGAGGATCAAGATGGGAAGGTTCAAAGTCAATGGAGACAGGTAGCTAGCATGAGTACAACCTATAAAATGTATCGCCATGCAAATGAGAAATTTGAAGAACTTTGGCTTCCTGAAACTGGAGCTATTTGGAAACATACTTCTTACTGTGGAGTGTTTAATGGAAAATTGTATATAAGTCATTACGTGACAGCGGATTCTAAGTACCATGTGTTGATGATGAATGGAAAAGGATTGTGGGAGTTACCATTTTTTATTAACATACCAAGGTTTTACAAAGGTTCAACACGTCTTGATTCCTATCACTTTCAACTCATCAAACCTTGGAAGGATGGAAAGATTCTGTGTCTTTTTTACTCGTTTCTTTTAGTCTTGTATGATACCAAGACAAGGAAGTTGGAGAAACTACATCAGGTCAAGGGGATAGTTAAGAGATCATTTCGCATTTGTCAAATGGACTCCATCCATTTTGATTCTCTCCCCAACATTTTGGCAGGGAATTAG

Protein sequence

MGSRRNLIKSRRKFRNLSAFTSLTTSISILFPTFWQGCCCCLILSHLQVVHPLVSERKRLRKSVVLHLELRDHNLKKFLGADADAVDCIDFSTLALVVNDWYASNLHFCLSSQYPNNKVEVDGEEVEQQEHNRFRASIRYSSPNIVEASTIFQFIHLQASERNRNRFDCVDLDPKHFDGMNLIGSFKLHSSWCSSSTGIVNSCNGFLCILNTKRVAMLNPMTNEYMELPSSTQYELSVYGLGYSPKTKGYKVGRHSYKNGELLVEILAFGTSLEDQDGKVQSQWRQVASMSTTYKMYRHANEKFEELWLPETGAIWKHTSYCGVFNGKLYISHYVTADSKYHVLMMNGKGLWELPFFINIPRFYKGSTRLDSYHFQLIKPWKDGKILCLFYSFLLVLYDTKTRKLEKLHQVKGIVKRSFRICQMDSIHFDSLPNILAGN*
Homology
[Close]
BLAST of Csa1G038970 vs. TrEMBL
Match: A0A0A0LQ77_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G038970 PE=4 SV=1)

HSP 1 Score: 907.9 bits (2345), Expect = 4.8e-261
Identity = 439/439 (100.00%), Postives = 439/439 (100.00%), Query Frame = 1 

Query: 1   MGSRRNLIKSRRKFRNLSAFTSLTTSISILFPTFWQGCCCCLILSHLQVVHPLVSERKRL 60
           MGSRRNLIKSRRKFRNLSAFTSLTTSISILFPTFWQGCCCCLILSHLQVVHPLVSERKRL
Sbjct: 1   MGSRRNLIKSRRKFRNLSAFTSLTTSISILFPTFWQGCCCCLILSHLQVVHPLVSERKRL 60

Query: 61  RKSVVLHLELRDHNLKKFLGADADAVDCIDFSTLALVVNDWYASNLHFCLSSQYPNNKVE 120
           RKSVVLHLELRDHNLKKFLGADADAVDCIDFSTLALVVNDWYASNLHFCLSSQYPNNKVE
Sbjct: 61  RKSVVLHLELRDHNLKKFLGADADAVDCIDFSTLALVVNDWYASNLHFCLSSQYPNNKVE 120

Query: 121 VDGEEVEQQEHNRFRASIRYSSPNIVEASTIFQFIHLQASERNRNRFDCVDLDPKHFDGM 180
           VDGEEVEQQEHNRFRASIRYSSPNIVEASTIFQFIHLQASERNRNRFDCVDLDPKHFDGM
Sbjct: 121 VDGEEVEQQEHNRFRASIRYSSPNIVEASTIFQFIHLQASERNRNRFDCVDLDPKHFDGM 180

Query: 181 NLIGSFKLHSSWCSSSTGIVNSCNGFLCILNTKRVAMLNPMTNEYMELPSSTQYELSVYG 240
           NLIGSFKLHSSWCSSSTGIVNSCNGFLCILNTKRVAMLNPMTNEYMELPSSTQYELSVYG
Sbjct: 181 NLIGSFKLHSSWCSSSTGIVNSCNGFLCILNTKRVAMLNPMTNEYMELPSSTQYELSVYG 240

Query: 241 LGYSPKTKGYKVGRHSYKNGELLVEILAFGTSLEDQDGKVQSQWRQVASMSTTYKMYRHA 300
           LGYSPKTKGYKVGRHSYKNGELLVEILAFGTSLEDQDGKVQSQWRQVASMSTTYKMYRHA
Sbjct: 241 LGYSPKTKGYKVGRHSYKNGELLVEILAFGTSLEDQDGKVQSQWRQVASMSTTYKMYRHA 300

Query: 301 NEKFEELWLPETGAIWKHTSYCGVFNGKLYISHYVTADSKYHVLMMNGKGLWELPFFINI 360
           NEKFEELWLPETGAIWKHTSYCGVFNGKLYISHYVTADSKYHVLMMNGKGLWELPFFINI
Sbjct: 301 NEKFEELWLPETGAIWKHTSYCGVFNGKLYISHYVTADSKYHVLMMNGKGLWELPFFINI 360

Query: 361 PRFYKGSTRLDSYHFQLIKPWKDGKILCLFYSFLLVLYDTKTRKLEKLHQVKGIVKRSFR 420
           PRFYKGSTRLDSYHFQLIKPWKDGKILCLFYSFLLVLYDTKTRKLEKLHQVKGIVKRSFR
Sbjct: 361 PRFYKGSTRLDSYHFQLIKPWKDGKILCLFYSFLLVLYDTKTRKLEKLHQVKGIVKRSFR 420

Query: 421 ICQMDSIHFDSLPNILAGN 440
           ICQMDSIHFDSLPNILAGN
Sbjct: 421 ICQMDSIHFDSLPNILAGN 439

[Close]
BLAST of Csa1G038970 vs. TrEMBL
Match: A0A0A0KJY9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G515480 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.6e-33
Identity = 115/320 (35.94%), Postives = 163/320 (50.94%), Query Frame = 1 

Query: 169 CVDLDPKHFDGMNLIGSFKLHSSWCSS--STGIVNSCNGFLCILNTKR--------VAML 228
           CVD DP +F+GMN IGSF  H  + +S  S  I+N+CNG L +L +KR        + +L
Sbjct: 73  CVDFDPMYFEGMNSIGSFTFHPKFSTSDSSISIINACNGLLSLLISKRKLGSVSYVLGIL 132

Query: 229 NPMTNEYMELPSSTQYE------LSVYGLGYSPKTKGYKVGRHSYKNGE--LLVEILAFG 288
           NPMTNEY + P+           L  YGLG++PKTK YK+ R S++  E   LVEI  FG
Sbjct: 133 NPMTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKTKQYKIARTSFRPDESTTLVEIFTFG 192

Query: 289 TS--------------LEDQDGKVQSQWRQVA--------SMSTTYKMYRHANEKFEELW 348
           ++              +ED     +     VA        S+S  Y++    NEK E++ 
Sbjct: 193 STHQVWTPVGFLPSLVVEDHGVYFKGGLYWVANQPDPHDSSISAIYRLDLE-NEKLEKIS 252

Query: 349 LPETGAIWKHTSYCGVFNGKLYISHYVTADSKYHVLMMNGKGLWELPFFINIPRFYK--- 408
            P+   I  H  + GVF+G LY++  V+ ++KY V  M     W   F I+ PR      
Sbjct: 253 CPQY--IGGHFFF-GVFDGTLYLT--VSKNNKYQVWKMKDNFSWIKAFVISRPRNLCHPD 312

Query: 409 ------GSTRLDSYHFQLIKPWKDGKILCLFYSFLLVLYDTKTRKLEKLHQVKGIVKRSF 440
                 G ++LD      IK  +DGKILCL     L+LYD KT+  E L      V++  
Sbjct: 313 HPHQPWGVSQLDP-----IKACEDGKILCLLAGLHLILYDPKTKSAEILTDQSVKVEKHL 372

[Close]
BLAST of Csa1G038970 vs. TrEMBL
Match: A0A0A0M1M5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G572960 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.3e-32
Identity = 112/319 (35.11%), Postives = 157/319 (49.22%), Query Frame = 1 

Query: 160 SERNRNRFDCVDLDPKHFDGMNLIGSFKLHSSWCSSSTGI--VNSCNGFLCILNTKR--- 219
           S R+ N   CV+ DP+H +GM+ + SF  H    S S  I  +NSC+G + ++  KR   
Sbjct: 68  SSRHPN-LHCVEFDPQHAEGMSTVASFAFHPDLSSGSCRITIINSCSGLISLIINKRRRR 127

Query: 220 ------VAMLNPMTNEYMELPSSTQYELSV----YGLGYSPKTKGYKVGRHSYKNGELLV 279
                 V +LNP+TNEY +LP+S      V    YGLG+SP T  YK+ R  + + E +V
Sbjct: 128 GHRLDLVCVLNPITNEYFKLPTSRSKGDRVPNYCYGLGFSPTTNQYKLARTHFTHDEFIV 187

Query: 280 EILAFGTSLE------------DQDGK--------VQSQWRQVASMST-TYKMYRH--AN 339
           +I AFGTS E            +  G         V SQ      +S  T  +YR    +
Sbjct: 188 DIFAFGTSCEWTPVGSVPNFLNEYHGVYLNGGLYWVGSQKLPNGGISDYTEVIYRLDLKD 247

Query: 340 EKFEELWLPETGAIWKHTSYCGVFNGKLYISHYVTADSKYHVLMMNGKGLWELPFFINIP 399
           EKFE++  P  G       Y  V+NG LY++ +   D  YH   M     W   F + +P
Sbjct: 248 EKFEKISFPLDGG---DDPYIAVYNGTLYLT-FCCEDFDYHAWKMEEDFSWSKEFVLALP 307

Query: 400 RFYKGSTRLD--SYHFQLIKPWKDGKILCLFYSFLLVLYDTKTRKLEKLHQVKGIVKRSF 439
                S R     Y+ QLIK  +DG ILCL+   LL+LYD  T+ +E L      +K + 
Sbjct: 308 ENVHHSLRHHPIGYYLQLIKFCEDGNILCLYAGILLILYDPSTQTVEILTNQDFEIKEAM 367

[Close]
BLAST of Csa1G038970 vs. TrEMBL
Match: A0A0A0K9K4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G093600 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 7.4e-12
Identity = 51/137 (37.23%), Postives = 67/137 (48.91%), Query Frame = 1 

Query: 166 RFDCVDLDPKHFDGMNLIGSFKLHSSWCSSSTGIVNSCNGFLCILNTKR-------VAML 225
           R DCVD   K   GMN++ SF       SS T I NSCNG LCI+   +         ++
Sbjct: 59  RMDCVDFHHKFSQGMNVLSSFTFDFP-ISSDTQITNSCNGLLCIIEENKYYKTSYVATII 118

Query: 226 NPMTNEYMELPSSTQYELSV-YGLGYSPKTKGYKVGRHSYKNGELLVEILAFGTSLEDQD 285
           NPMTNEY+ LP   +Y L   +GLG+S K+  YK  R         +EIL  G S     
Sbjct: 119 NPMTNEYVTLPGYNEYCLYFGFGLGFSSKSNEYKFARIFLVKNICGLEILTLGKS----- 178

Query: 286 GKVQSQWRQVASMSTTY 295
               ++WR V+ +   Y
Sbjct: 179 ----NEWRHVSYLPILY 185

[Close]
BLAST of Csa1G038970 vs. TrEMBL
Match: A0A0A0K9K4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G093600 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 2.4e-02
Identity = 31/90 (34.44%), Postives = 47/90 (52.22%), Query Frame = 1 

Query: 350 GLWELPFFINI----PRFYKGSTRLDSYHFQLIKPWKDGKILCLFYSFLLVLYDTKTRKL 409
           GLW L F +NI    P FY  +        ++IK  + G+I  L     L+LYD KT+K+
Sbjct: 272 GLWTLWFVVNISACVPLFYLDNILWKGCSLKIIKICESGEIFFLLEEQYLLLYDLKTQKI 331

Query: 410 EKLHQVKGIVKRSFRICQMDSIHFDSLPNI 436
            K+H+ +     SF + ++ S  F+SL  I
Sbjct: 332 TKIHETED----SFSVFEIKSPSFNSLRTI 357


HSP 2 Score: 76.6 bits (187), Expect = 8.2e-11
Identity = 84/310 (27.10%), Postives = 133/310 (42.90%), Query Frame = 1 

Query: 166 RFDCVDLDPKHFDGMNLIGSFKLHSSWCSSSTGIVNSCNGFLCI---LNTKRVA--MLNP 225
           +  C+D+D      M+ +GSF        S+  IV+SC+  L I   ++T  +   +LNP
Sbjct: 8   KIHCIDIDT-----MSCVGSFGFEDDHNHSTVSIVSSCHALLLISKLIDTDDLCEGILNP 67

Query: 226 MTNEYMELPSSTQYELS-VYGLGYSPKTKGYKVGRHSYKNGE---LLVEILAFGTSLEDQ 285
           MTNE++ELP     E S  YG G++PKTK YK+ R + ++      ++EI+ FG   E +
Sbjct: 68  MTNEFLELPDREYDESSPYYGFGFNPKTKQYKLFRVTERDRYEFYSIMEIMRFGDRSETK 127

Query: 286 DGKVQSQWRQVASMSTTYK---------MYRHANEK------------FEELWLPETGAI 345
           +     +WR       ++          +Y    EK             E++ L     +
Sbjct: 128 E-----EWRHFKCPPISFDDHGAYLNGVIYWMGKEKGKAYVIYALDVETEQMELVADLEV 187

Query: 346 WKHT----SYCGVFNGKLYISHYVTAD--SKYHVLMMNGKGLWELPFFINIPRFYKGSTR 405
             H      Y    N  +Y    +     +K  +  M GK  W   F +     Y   +R
Sbjct: 188 GPHNFRYNGYIATLNKSVYAYVPIVGPCCTKIQIWTMQGKEGWIREFVM-----YDEVSR 247

Query: 406 LDSYHFQLIKPWKDGKILCLFYSFLLVLYDTKTR-KLEKLHQVKGIVKRSFRICQMDSIH 439
                 Q++K  KDG+        +L    T    K+E L   K I  R   +CQ++S++
Sbjct: 248 GLRMPMQMVKVLKDGERWFFVEGNILCCDKTGMNIKIESLWNSK-IETRFDGLCQIESLN 301

[Close]
BLAST of Csa1G038970 vs. NCBI nr
Match: gi|700208934|gb|KGN64030.1| (hypothetical protein Csa_1G038970 [Cucumis sativus])

HSP 1 Score: 907.9 bits (2345), Expect = 6.9e-261
Identity = 439/439 (100.00%), Postives = 439/439 (100.00%), Query Frame = 1 

Query: 1   MGSRRNLIKSRRKFRNLSAFTSLTTSISILFPTFWQGCCCCLILSHLQVVHPLVSERKRL 60
           MGSRRNLIKSRRKFRNLSAFTSLTTSISILFPTFWQGCCCCLILSHLQVVHPLVSERKRL
Sbjct: 1   MGSRRNLIKSRRKFRNLSAFTSLTTSISILFPTFWQGCCCCLILSHLQVVHPLVSERKRL 60

Query: 61  RKSVVLHLELRDHNLKKFLGADADAVDCIDFSTLALVVNDWYASNLHFCLSSQYPNNKVE 120
           RKSVVLHLELRDHNLKKFLGADADAVDCIDFSTLALVVNDWYASNLHFCLSSQYPNNKVE
Sbjct: 61  RKSVVLHLELRDHNLKKFLGADADAVDCIDFSTLALVVNDWYASNLHFCLSSQYPNNKVE 120

Query: 121 VDGEEVEQQEHNRFRASIRYSSPNIVEASTIFQFIHLQASERNRNRFDCVDLDPKHFDGM 180
           VDGEEVEQQEHNRFRASIRYSSPNIVEASTIFQFIHLQASERNRNRFDCVDLDPKHFDGM
Sbjct: 121 VDGEEVEQQEHNRFRASIRYSSPNIVEASTIFQFIHLQASERNRNRFDCVDLDPKHFDGM 180

Query: 181 NLIGSFKLHSSWCSSSTGIVNSCNGFLCILNTKRVAMLNPMTNEYMELPSSTQYELSVYG 240
           NLIGSFKLHSSWCSSSTGIVNSCNGFLCILNTKRVAMLNPMTNEYMELPSSTQYELSVYG
Sbjct: 181 NLIGSFKLHSSWCSSSTGIVNSCNGFLCILNTKRVAMLNPMTNEYMELPSSTQYELSVYG 240

Query: 241 LGYSPKTKGYKVGRHSYKNGELLVEILAFGTSLEDQDGKVQSQWRQVASMSTTYKMYRHA 300
           LGYSPKTKGYKVGRHSYKNGELLVEILAFGTSLEDQDGKVQSQWRQVASMSTTYKMYRHA
Sbjct: 241 LGYSPKTKGYKVGRHSYKNGELLVEILAFGTSLEDQDGKVQSQWRQVASMSTTYKMYRHA 300

Query: 301 NEKFEELWLPETGAIWKHTSYCGVFNGKLYISHYVTADSKYHVLMMNGKGLWELPFFINI 360
           NEKFEELWLPETGAIWKHTSYCGVFNGKLYISHYVTADSKYHVLMMNGKGLWELPFFINI
Sbjct: 301 NEKFEELWLPETGAIWKHTSYCGVFNGKLYISHYVTADSKYHVLMMNGKGLWELPFFINI 360

Query: 361 PRFYKGSTRLDSYHFQLIKPWKDGKILCLFYSFLLVLYDTKTRKLEKLHQVKGIVKRSFR 420
           PRFYKGSTRLDSYHFQLIKPWKDGKILCLFYSFLLVLYDTKTRKLEKLHQVKGIVKRSFR
Sbjct: 361 PRFYKGSTRLDSYHFQLIKPWKDGKILCLFYSFLLVLYDTKTRKLEKLHQVKGIVKRSFR 420

Query: 421 ICQMDSIHFDSLPNILAGN 440
           ICQMDSIHFDSLPNILAGN
Sbjct: 421 ICQMDSIHFDSLPNILAGN 439

[Close]
BLAST of Csa1G038970 vs. NCBI nr
Match: gi|449439641|ref|XP_004137594.1| (PREDICTED: F-box protein At5g65850-like [Cucumis sativus])

HSP 1 Score: 290.0 bits (741), Expect = 6.8e-75
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1 

Query: 162 RNRNRFDCVDLDPKHFDGMNLIGSFKLHSSWCSSSTGIVNSCNGFLCILNTKRVAMLNPM 221
           RNRNRFDCVDLDPKHFDGMNLIGSFKLHSSWCSSSTGIVNSCNGFLCILNTKRVAMLNPM
Sbjct: 69  RNRNRFDCVDLDPKHFDGMNLIGSFKLHSSWCSSSTGIVNSCNGFLCILNTKRVAMLNPM 128

Query: 222 TNEYMELPSSTQYELSVYGLGYSPKTKGYKVGRHSYKNGELLVEILAFGTSLEDQDGKVQ 281
           TNEYMELPSSTQYELSVYGLGYSPKTKGYKVGRHSYKNGELLVEILAFGTSLEDQDGKVQ
Sbjct: 129 TNEYMELPSSTQYELSVYGLGYSPKTKGYKVGRHSYKNGELLVEILAFGTSLEDQDGKVQ 188

Query: 282 SQWRQVASMSTTYKMYRH 300
           SQWRQVASMSTTYKMYRH
Sbjct: 189 SQWRQVASMSTTYKMYRH 206

[Close]
BLAST of Csa1G038970 vs. NCBI nr
Match: gi|659066492|ref|XP_008447090.1| (PREDICTED: putative F-box protein At3g52320 [Cucumis melo])

HSP 1 Score: 254.2 bits (648), Expect = 4.1e-64
Identity = 122/156 (78.21%), Postives = 133/156 (85.26%), Query Frame = 1 

Query: 285 RQVASMSTTYKMYRH--ANEKFEELWLPETGAIWKHTSYCGVFNGKLYISHYVTADSKYH 344
           R  +S    Y ++R    NEKFEELWLPE G+IWKHTSYCGVFNGKLY+SHYVTADS YH
Sbjct: 221 RSDSSAKNVYVLWRLNVTNEKFEELWLPEIGSIWKHTSYCGVFNGKLYLSHYVTADSMYH 280

Query: 345 VLMMNGKGLWELPFFINIPRFYKGSTRLDSYHFQLIKPWKDGKILCLFYSFLLVLYDTKT 404
           VLMMNGKGLWE PFFI+IPRFYKGSTRL+S HFQLIKPWK GKILCLFYSFLLVL+DTK+
Sbjct: 281 VLMMNGKGLWETPFFISIPRFYKGSTRLESNHFQLIKPWKKGKILCLFYSFLLVLFDTKS 340

Query: 405 RKLEKLHQVKGIVKRSFRICQMDSIHFDSLPNILAG 439
            KLEKL  V+  VK+SFRIC MDSIHF SLPNILAG
Sbjct: 341 GKLEKLDYVEEEVKKSFRICHMDSIHFGSLPNILAG 376

[Close]
BLAST of Csa1G038970 vs. NCBI nr
Match: gi|659066492|ref|XP_008447090.1| (PREDICTED: putative F-box protein At3g52320 [Cucumis melo])

HSP 1 Score: 218.4 bits (555), Expect = 2.5e-53
Identity = 106/141 (75.18%), Postives = 118/141 (83.69%), Query Frame = 1 

Query: 162 RNRNRFDCVDLDPKHFDGMNLIGSFKLHSSWCSSSTGIVNSCNGFLCILNTKRVAMLNPM 221
           R+RNR  CVDL+P   +G+NL+GSFKLH SW SSSTGIVN CNG LCILN KRVA+LNPM
Sbjct: 65  RSRNRLHCVDLNPNRSEGVNLVGSFKLHPSWSSSSTGIVNICNGLLCILNGKRVAILNPM 124

Query: 222 TNEYMELPSSTQYELSVYGLGYSPKTKGYKVGRHSYKNGELLVEILAFGTSLEDQDG--- 281
           TNEYMELPS T+Y+ SVYGLGYSPKTK YKV RHS+KN EL VEILAF TSL DQDG   
Sbjct: 125 TNEYMELPSRTEYQSSVYGLGYSPKTKQYKVARHSFKNDELFVEILAFDTSLADQDGNQN 184

Query: 282 KVQSQWRQVASMSTTYKMYRH 300
           +VQSQWR V S+STTYKM+RH
Sbjct: 185 EVQSQWRHVVSISTTYKMHRH 205


HSP 2 Score: 151.4 bits (381), Expect = 3.8e-33
Identity = 115/320 (35.94%), Postives = 163/320 (50.94%), Query Frame = 1 

Query: 169 CVDLDPKHFDGMNLIGSFKLHSSWCSS--STGIVNSCNGFLCILNTKR--------VAML 228
           CVD DP +F+GMN IGSF  H  + +S  S  I+N+CNG L +L +KR        + +L
Sbjct: 73  CVDFDPMYFEGMNSIGSFTFHPKFSTSDSSISIINACNGLLSLLISKRKLGSVSYVLGIL 132

Query: 229 NPMTNEYMELPSSTQYE------LSVYGLGYSPKTKGYKVGRHSYKNGE--LLVEILAFG 288
           NPMTNEY + P+           L  YGLG++PKTK YK+ R S++  E   LVEI  FG
Sbjct: 133 NPMTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKTKQYKIARTSFRPDESTTLVEIFTFG 192

Query: 289 TS--------------LEDQDGKVQSQWRQVA--------SMSTTYKMYRHANEKFEELW 348
           ++              +ED     +     VA        S+S  Y++    NEK E++ 
Sbjct: 193 STHQVWTPVGFLPSLVVEDHGVYFKGGLYWVANQPDPHDSSISAIYRLDLE-NEKLEKIS 252

Query: 349 LPETGAIWKHTSYCGVFNGKLYISHYVTADSKYHVLMMNGKGLWELPFFINIPRFYK--- 408
            P+   I  H  + GVF+G LY++  V+ ++KY V  M     W   F I+ PR      
Sbjct: 253 CPQY--IGGHFFF-GVFDGTLYLT--VSKNNKYQVWKMKDNFSWIKAFVISRPRNLCHPD 312

Query: 409 ------GSTRLDSYHFQLIKPWKDGKILCLFYSFLLVLYDTKTRKLEKLHQVKGIVKRSF 440
                 G ++LD      IK  +DGKILCL     L+LYD KT+  E L      V++  
Sbjct: 313 HPHQPWGVSQLDP-----IKACEDGKILCLLAGLHLILYDPKTKSAEILTDQSVKVEKHL 372

[Close]
BLAST of Csa1G038970 vs. NCBI nr
Match: gi|659078870|ref|XP_008439950.1| (PREDICTED: putative F-box protein At3g21120 [Cucumis melo])

HSP 1 Score: 150.2 bits (378), Expect = 8.4e-33
Identity = 117/320 (36.56%), Postives = 162/320 (50.62%), Query Frame = 1 

Query: 169 CVDLDPKHFDGMNLIGSFKLHS--SWCSSSTGIVNSCNGFLCILNTKR--------VAML 228
           CVD DP + +GMN +GSF  H   S  SSS  I+N+CNG L +L +KR        + +L
Sbjct: 73  CVDFDPMYSEGMNSVGSFSFHPKFSTSSSSISIINACNGLLSLLISKRKPGSVSYVLGIL 132

Query: 229 NPMTNEYMELPSSTQYE------LSVYGLGYSPKTKGYKVGRHSYKNGE--LLVEILAFG 288
           NPMTNEY + P+           L  YGLG++PK K YK+ R S++  E   LVEI AFG
Sbjct: 133 NPMTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKKKQYKIARTSFRPDESTTLVEIFAFG 192

Query: 289 T------------SLEDQDGKVQSQ----W------RQVASMSTTYKMYRHANEKFEELW 348
           +            SL  +D  V       W         +S+ST Y++    NE  E++ 
Sbjct: 193 SIYQVWTSVGFLPSLVVEDHGVYFNGGLYWVANQPDPHDSSISTIYRLDIE-NENLEKIS 252

Query: 349 LPETGAIWKHTSYCGVFNGKLYISHYVTADSKYHVLMMNGKGLWELPFFINIPRFYK--- 408
            P+   +  H  + GVF+G LY++  V+ ++KY V  M     W   F I+ PR      
Sbjct: 253 CPQH--LGGHFFF-GVFDGTLYLT--VSKNNKYQVWKMKDNFSWIKAFVISSPRNLCHPD 312

Query: 409 ------GSTRLDSYHFQLIKPWKDGKILCLFYSFLLVLYDTKTRKLEKLHQVKGIVKRSF 440
                 G ++LD      IK  +DGKILCL     L+LYD KT+  E L      V++  
Sbjct: 313 HPHQPWGVSQLDP-----IKACEDGKILCLLAGLHLILYDPKTKSAEILTDQSVKVEKHL 372

The following BLAST results are available for this feature:
BLAST of Csa1G038970 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQ77_CUCSA4.8e-261100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G038970 PE=4 SV=1[more]
A0A0A0KJY9_CUCSA2.6e-3335.94Uncharacterized protein OS=Cucumis sativus GN=Csa_6G515480 PE=4 SV=1[more]
A0A0A0M1M5_CUCSA1.3e-3235.11Uncharacterized protein OS=Cucumis sativus GN=Csa_1G572960 PE=4 SV=1[more]
A0A0A0K9K4_CUCSA7.4e-1237.23Uncharacterized protein OS=Cucumis sativus GN=Csa_6G093600 PE=4 SV=1[more]
A0A0A0K9K4_CUCSA2.4e-0234.44Uncharacterized protein OS=Cucumis sativus GN=Csa_6G093600 PE=4 SV=1[more]
BLAST of Csa1G038970 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208934|gb|KGN64030.1|6.9e-261100.00hypothetical protein Csa_1G038970 [Cucumis sativus][more]
gi|449439641|ref|XP_004137594.1|6.8e-75100.00PREDICTED: F-box protein At5g65850-like [Cucumis sativus][more]
gi|659066492|ref|XP_008447090.1|4.1e-6478.21PREDICTED: putative F-box protein At3g52320 [Cucumis melo][more]
gi|659066492|ref|XP_008447090.1|2.5e-5375.18PREDICTED: putative F-box protein At3g52320 [Cucumis melo][more]
gi|659078870|ref|XP_008439950.1|8.4e-3336.56PREDICTED: putative F-box protein At3g21120 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR017451F-box-assoc_interact_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G038970.1Csa1G038970.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017451F-box associated interaction domainTIGRFAMsTIGR01640TIGR01640coord: 201..272
score: 2.7
NoneNo IPR availablePANTHERPTHR32133FAMILY NOT NAMEDcoord: 199..407
score: 2.8
NoneNo IPR availablePANTHERPTHR32133:SF136SUBFAMILY NOT NAMEDcoord: 199..407
score: 2.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G038970MELO3C002009Melon (DHL92) v3.5.1cumeB027
Csa1G038970MELO3C002009.2Melon (DHL92) v3.6.1cumedB022
Csa1G038970CSPI01G05910Wild cucumber (PI 183967)cpicuB000
Csa1G038970CsGy1G005650Cucumber (Gy14) v2cgybcuB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G038970Melon (DHL92) v3.6.1cumedB001
Csa1G038970Melon (DHL92) v3.6.1cumedB003
Csa1G038970Melon (DHL92) v3.6.1cumedB048
Csa1G038970Melon (DHL92) v3.6.1cumedB056
Csa1G038970Silver-seed gourdcarcuB0106
Csa1G038970Silver-seed gourdcarcuB0052
Csa1G038970Silver-seed gourdcarcuB0269
Csa1G038970Silver-seed gourdcarcuB0415
Csa1G038970Silver-seed gourdcarcuB0495
Csa1G038970Watermelon (97103) v2cuwmbB054
Csa1G038970Watermelon (97103) v2cuwmbB059
Csa1G038970Watermelon (97103) v2cuwmbB080
Csa1G038970Wax gourdcuwgoB010
Csa1G038970Wax gourdcuwgoB050
Csa1G038970Wax gourdcuwgoB069
Csa1G038970Wax gourdcuwgoB115
Csa1G038970Cucumber (Chinese Long) v2cucuB000
Csa1G038970Cucumber (Chinese Long) v2cucuB032
Csa1G038970Cucumber (Chinese Long) v2cucuB028
Csa1G038970Cucumber (Chinese Long) v2cucuB037
Csa1G038970Cucumber (Gy14) v1cgycuB227
Csa1G038970Cucumber (Gy14) v1cgycuB137
Csa1G038970Cucumber (Gy14) v1cgycuB300
Csa1G038970Cucumber (Gy14) v1cgycuB403
Csa1G038970Cucurbita maxima (Rimu)cmacuB054
Csa1G038970Cucurbita maxima (Rimu)cmacuB105
Csa1G038970Cucurbita maxima (Rimu)cmacuB217
Csa1G038970Cucurbita maxima (Rimu)cmacuB403
Csa1G038970Cucurbita maxima (Rimu)cmacuB428
Csa1G038970Cucurbita maxima (Rimu)cmacuB684
Csa1G038970Cucurbita moschata (Rifu)cmocuB043
Csa1G038970Cucurbita moschata (Rifu)cmocuB077
Csa1G038970Cucurbita moschata (Rifu)cmocuB202
Csa1G038970Cucurbita moschata (Rifu)cmocuB391
Csa1G038970Cucurbita moschata (Rifu)cmocuB417
Csa1G038970Cucurbita moschata (Rifu)cmocuB674
Csa1G038970Cucurbita moschata (Rifu)cmocuB675
Csa1G038970Melon (DHL92) v3.5.1cumeB006
Csa1G038970Melon (DHL92) v3.5.1cumeB008
Csa1G038970Melon (DHL92) v3.5.1cumeB056
Csa1G038970Watermelon (Charleston Gray)cuwcgB057
Csa1G038970Watermelon (Charleston Gray)cuwcgB061
Csa1G038970Watermelon (Charleston Gray)cuwcgB083
Csa1G038970Watermelon (97103) v1cuwmB038
Csa1G038970Watermelon (97103) v1cuwmB062
Csa1G038970Watermelon (97103) v1cuwmB096
Csa1G038970Cucurbita pepo (Zucchini)cpecuB026
Csa1G038970Cucurbita pepo (Zucchini)cpecuB366
Csa1G038970Cucurbita pepo (Zucchini)cpecuB379
Csa1G038970Cucurbita pepo (Zucchini)cpecuB380
Csa1G038970Cucurbita pepo (Zucchini)cpecuB505
Csa1G038970Cucurbita pepo (Zucchini)cpecuB533
Csa1G038970Cucurbita pepo (Zucchini)cpecuB655
Csa1G038970Bottle gourd (USVL1VR-Ls)culsiB022
Csa1G038970Bottle gourd (USVL1VR-Ls)culsiB053
Csa1G038970Bottle gourd (USVL1VR-Ls)culsiB072
Csa1G038970Cucumber (Gy14) v2cgybcuB004
Csa1G038970Cucumber (Gy14) v2cgybcuB197
Csa1G038970Cucumber (Gy14) v2cgybcuB201