Csa1G033310 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G033310
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionChlorophyll a-b binding protein P4, chloroplastic; contains IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)
LocationChr1 : 3605570 .. 3606960 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATTCATAAAACTCATCTTAGTCATCTGATCCTCAACTTTCATACTTTCTAACCCTTGATTTCCATCAAGCAAATGAACACCCTAATCTTAAATGCCACGCACAAAATACACTTCTTGAACTCACACCAAAACCAGGCTTTCTTCTACCACCCTTCTTGCTGAAAAAATGGCAACTGTCATTACTCAGGCTTCTGCCACTGTCTTCCGGCCATGTGCTTCAAGATCGAGGTTTCTCTCGGGGTCCTCGGGAAAGTTTAACAGAGCCTTGTCTGTTAAGCCAACAACTTCTTCAATTCCTAATGCTTTCAAAGTTGAGGCCAAGAAAGGAGAGTGGTTGCCGGGTTTGCCATCACCAACTTATCTTGATGGAAGGTATGGATTATTAAAAAATATATGAGATATTTGGCAATGGACATGTGAATTAAGAAAACAGCTTAAACATTTCTGTTTGCAGCCTTCCAGGTGACAACGGATTTGATCCTCTAGGACTTGCAGAGGATCCCGAAAACTTGAGGTGGTATACGCAAGCCGAGCTAGTGAATGGTCGATGGGCGATGCTCGGAGTTGCAGGTATGGTATTGCCTGAAGTCTTGACAAATTATGGAATCATCAATGTACCAAAATGGTACGATGCGGGGAAAGCAGAGTATTTTGCATCGTCATCGACTCTCTTTGTGATTGAGTTCATTCTGTTCCATTATGTGGAAATCAGAAGATGGCAAGATATAAAGAACCCAGGAAGTGTAAATCAAGATCCAATTTTTAAGCAATACAGCTTGCCACCAAATGATGTTGGGTACCCAGGGGGAATTTTCAACCCACTCAACTTTGAACCAACTCTTGAGGCCAGAGAAAAGGAGATTGCTAATGGTAAATGTTTCAGAAACAAACTAGCTAATCAAATAACTTAATTATTACACTTGTAATAATGTGATTAATCAAAAGTTTTGATGATCTCTCTACAGGAAGACTGGCAATGTTGGCATTCTTGGGATTTATTGTTCAACACAACGTGACTGGAAAAGGTCCATTTGACAACTTCATGCAGCACATTTCAGACCCATGGCACAACACAATAGTTCAAACACTAAGGTGATAGGAGACAATAAAATATATGCAAGAAGAATAAGTGATCAGTGTGATTGTAGAGAAGGGAACTATCGGTGTACAGTATGGTAGCAGTTATATGAATGTAGTGTAAGCATGGAACTTGGTTTTAACCGAGAAAGAAAGAATGTAATCATGTCGACTTCTTTGATTTTCTCGAAACTTGATATAGAAATATGAAATTCGCATCCATGTTTTACAATAGCTCAATGTACAGCTAAGGAAACCAGAAACCCCCAAATACTTTACAGCTCTTCCATGAGGGAAAAGAAAAAGGAAAAA

mRNA sequence

ATGGCAACTGTCATTACTCAGGCTTCTGCCACTGTCTTCCGGCCATGTGCTTCAAGATCGAGGTTTCTCTCGGGGTCCTCGGGAAAGTTTAACAGAGCCTTGTCTGTTAAGCCAACAACTTCTTCAATTCCTAATGCTTTCAAAGTTGAGGCCAAGAAAGGAGAGTGGTTGCCGGGTTTGCCATCACCAACTTATCTTGATGGAAGCCTTCCAGGTGACAACGGATTTGATCCTCTAGGACTTGCAGAGGATCCCGAAAACTTGAGGTGGTATACGCAAGCCGAGCTAGTGAATGGTCGATGGGCGATGCTCGGAGTTGCAGGTATGGTATTGCCTGAAGTCTTGACAAATTATGGAATCATCAATGTACCAAAATGGTACGATGCGGGGAAAGCAGAGTATTTTGCATCGTCATCGACTCTCTTTGTGATTGAGTTCATTCTGTTCCATTATGTGGAAATCAGAAGATGGCAAGATATAAAGAACCCAGGAAGTGTAAATCAAGATCCAATTTTTAAGCAATACAGCTTGCCACCAAATGATGTTGGGTACCCAGGGGGAATTTTCAACCCACTCAACTTTGAACCAACTCTTGAGGCCAGAGAAAAGGAGATTGCTAATGGAAGACTGGCAATGTTGGCATTCTTGGGATTTATTGTTCAACACAACGTGACTGGAAAAGGTCCATTTGACAACTTCATGCAGCACATTTCAGACCCATGGCACAACACAATAGTTCAAACACTAAGGTGA

Coding sequence (CDS)

ATGGCAACTGTCATTACTCAGGCTTCTGCCACTGTCTTCCGGCCATGTGCTTCAAGATCGAGGTTTCTCTCGGGGTCCTCGGGAAAGTTTAACAGAGCCTTGTCTGTTAAGCCAACAACTTCTTCAATTCCTAATGCTTTCAAAGTTGAGGCCAAGAAAGGAGAGTGGTTGCCGGGTTTGCCATCACCAACTTATCTTGATGGAAGCCTTCCAGGTGACAACGGATTTGATCCTCTAGGACTTGCAGAGGATCCCGAAAACTTGAGGTGGTATACGCAAGCCGAGCTAGTGAATGGTCGATGGGCGATGCTCGGAGTTGCAGGTATGGTATTGCCTGAAGTCTTGACAAATTATGGAATCATCAATGTACCAAAATGGTACGATGCGGGGAAAGCAGAGTATTTTGCATCGTCATCGACTCTCTTTGTGATTGAGTTCATTCTGTTCCATTATGTGGAAATCAGAAGATGGCAAGATATAAAGAACCCAGGAAGTGTAAATCAAGATCCAATTTTTAAGCAATACAGCTTGCCACCAAATGATGTTGGGTACCCAGGGGGAATTTTCAACCCACTCAACTTTGAACCAACTCTTGAGGCCAGAGAAAAGGAGATTGCTAATGGAAGACTGGCAATGTTGGCATTCTTGGGATTTATTGTTCAACACAACGTGACTGGAAAAGGTCCATTTGACAACTTCATGCAGCACATTTCAGACCCATGGCACAACACAATAGTTCAAACACTAAGGTGA

Protein sequence

MATVITQASATVFRPCASRSRFLSGSSGKFNRALSVKPTTSSIPNAFKVEAKKGEWLPGLPSPTYLDGSLPGDNGFDPLGLAEDPENLRWYTQAELVNGRWAMLGVAGMVLPEVLTNYGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEAREKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFMQHISDPWHNTIVQTLR*
Homology
[Close]
BLAST of Csa1G033310 vs. Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 435.3 bits (1118), Expect = 4.7e-121
Identity = 208/249 (83.53%), Postives = 219/249 (87.95%), Query Frame = 1 

Query: 1   MATVITQASATVFRPCASRSRFLSGSSGKFNRALSVKPTTSSIPNAFKVEAKKGEWLPGL 60
           MATV TQASA +F PC  +SRFL GSSGK NR ++ +P   S   +FKVEAKKGEWLPGL
Sbjct: 1   MATVTTQASAAIFGPCGLKSRFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGL 60

Query: 61  PSPTYLDGSLPGDNGFDPLGLAEDPENLRWYTQAELVNGRWAMLGVAGMVLPEVLTNYGI 120
            SP YL GSLPGDNGFDPLGLAEDPENLRW+ QAELVNGRWAMLGVAGM+LPEV T+ GI
Sbjct: 61  ASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI 120

Query: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           INVPKWY AGK EYFASSSTLFVIEFIL HYVEIRRWQDIKNPGSVNQDPIFKQYSLP  
Sbjct: 121 INVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAG 180

Query: 181 DVGYPGGIFNPLNFEPTLEAREKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFMQHISDP 240
           +VGYPGGIFNPLNF PTLEA+EKEIANGRLAMLAFLGFI+QHNVTGKGPFDN +QHISDP
Sbjct: 181 EVGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDP 240

Query: 241 WHNTIVQTL 250
           WHNTIVQTL
Sbjct: 241 WHNTIVQTL 249

[Close]
BLAST of Csa1G033310 vs. Swiss-Prot
Match: CA4_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=LHCA4 PE=1 SV=1)

HSP 1 Score: 424.5 bits (1090), Expect = 8.2e-118
Identity = 202/249 (81.12%), Postives = 219/249 (87.95%), Query Frame = 1 

Query: 1   MATVITQASATVFRPCASRSRFLSGSSGKFNRALSVKPTTSSIP-NAFKVEAKKGEWLPG 60
           MATV T ASA++FRPC S+ RFL+GSSG+ NR LS     SS   ++FKVEAKKGEWLPG
Sbjct: 1   MATVTTHASASIFRPCTSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPG 60

Query: 61  LPSPTYLDGSLPGDNGFDPLGLAEDPENLRWYTQAELVNGRWAMLGVAGMVLPEVLTNYG 120
           L SP YL GSL GDNGFDPLGLAEDPENL+W+ QAELVNGRWAMLGVAGM+LPEV T  G
Sbjct: 61  LASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIG 120

Query: 121 IINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPP 180
           IINVP+WYDAGK +YFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 
Sbjct: 121 IINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPK 180

Query: 181 NDVGYPGGIFNPLNFEPTLEAREKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFMQHISD 240
            +VGYPGGIFNPLNF PT EA+EKE+ANGRLAMLAFLGF+VQHNVTGKGPF+N +QH+SD
Sbjct: 181 GEVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSD 240

Query: 241 PWHNTIVQT 249
           PWHNTIVQT
Sbjct: 241 PWHNTIVQT 249

[Close]
BLAST of Csa1G033310 vs. Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 8.6e-83
Identity = 148/225 (65.78%), Postives = 173/225 (76.89%), Query Frame = 1 

Query: 29  KFNRALSVKPTTSSIPNAFKVEAK---KGEWLPGLPSPTYLDGSLPGDNGFDPLGLAEDP 88
           +F   +   P  S  P + + +     KG WLPGL SP YLDGSL GDNGFDPL LAEDP
Sbjct: 6   RFRTRVPPSPAASGSPRSTRRDVAVQAKGSWLPGLQSPAYLDGSLEGDNGFDPLALAEDP 65

Query: 89  ENLRWYTQAELVNGRWAMLGVAGMVLPEVLTNYGIINVPKWYD-AGKAEYFASSSTLFVI 148
           E+LRW+ QA++VNGRWAMLGVAGM++PEVLT  G++N P+W    GK  YFASSST   +
Sbjct: 66  EDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRV 125

Query: 149 EFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEAREKE 208
             +   YVEIRRWQDIKNPGSVNQDPIFK YSLPP++ GYPG +FNPLNF P LE +EKE
Sbjct: 126 H-MSSTYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGRVFNPLNFAP-LENKEKE 185

Query: 209 IANGRLAMLAFLGFIVQHNVTGKGPFDNFMQHISDPWHNTIVQTL 250
           +ANGRLAMLAFLGF+VQHNV GKGPF+N  QH++DPWHNTI+QT+
Sbjct: 186 LANGRLAMLAFLGFLVQHNVHGKGPFENLQQHLADPWHNTIIQTI 228

[Close]
BLAST of Csa1G033310 vs. Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 4.6e-60
Identity = 117/235 (49.79%), Postives = 146/235 (62.13%), Query Frame = 1 

Query: 17  ASRSRFLSGSSGKFNRALSVKPTTSSIPNAFKVEAKKGEWLPGLPSPTYLDGSLPGDNGF 76
           A+++ FL G   + ++ ++   + S   +A   +  +  W PG   P +LDGSLPGD GF
Sbjct: 29  ATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGF 88

Query: 77  DPLGLAEDPENLRWYTQAELVNGRWAMLGVAGMVLPEVLTNYGIINVPKWYDAGKAEYFA 136
           DPLGL  DPE+L+W  QAELV+ RWAMLG AG+ +PE LT  G++N P WY AG+ EYF 
Sbjct: 89  DPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFT 148

Query: 137 SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGI-FNPLNF- 196
            ++TLFVIE +L  + E RRW DI  PG VN DPIF    L   DVGYPGG+ F+PL + 
Sbjct: 149 DTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG 208

Query: 197 ----EPTLEAREKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFMQHISDPWHNTI 246
                   E R KEI NGRLAMLA +G   QH  TG GP DN   H++DP H TI
Sbjct: 209 SGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATI 263

[Close]
BLAST of Csa1G033310 vs. Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 2.3e-59
Identity = 116/234 (49.57%), Postives = 144/234 (61.54%), Query Frame = 1 

Query: 18  SRSRFLSGSSGKFNRALSVKPTTSSIPNAFKVEAKKGEWLPGLPSPTYLDGSLPGDNGFD 77
           +++ FL G   + ++  +     S+       +  +  W PG   P +LDGSLPGD GFD
Sbjct: 30  TKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFD 89

Query: 78  PLGLAEDPENLRWYTQAELVNGRWAMLGVAGMVLPEVLTNYGIINVPKWYDAGKAEYFAS 137
           PLGLA DPE+LRW  QAELV+ RWAMLG AG+ +PE+LT  GI+N P WY AG+ EYF  
Sbjct: 90  PLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTD 149

Query: 138 SSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGI-FNPLNF-- 197
           ++TLF++E +L  + E RRW DI  PG VN DPIF    L   DVGYPGG+ F+PL +  
Sbjct: 150 TTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGS 209

Query: 198 ---EPTLEAREKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFMQHISDPWHNTI 246
                  E R KEI NGRLAMLA +G   QH  TG GP DN   H++DP H TI
Sbjct: 210 GSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATI 263

[Close]
BLAST of Csa1G033310 vs. TrEMBL
Match: A0A0A0LTE5_CUCSA (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_1G033310 PE=3 SV=1)

HSP 1 Score: 518.5 bits (1334), Expect = 4.7e-144
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 1 

Query: 1   MATVITQASATVFRPCASRSRFLSGSSGKFNRALSVKPTTSSIPNAFKVEAKKGEWLPGL 60
           MATVITQASATVFRPCASRSRFLSGSSGKFNRALSVKPTTSSIPNAFKVEAKKGEWLPGL
Sbjct: 1   MATVITQASATVFRPCASRSRFLSGSSGKFNRALSVKPTTSSIPNAFKVEAKKGEWLPGL 60

Query: 61  PSPTYLDGSLPGDNGFDPLGLAEDPENLRWYTQAELVNGRWAMLGVAGMVLPEVLTNYGI 120
           PSPTYLDGSLPGDNGFDPLGLAEDPENLRWYTQAELVNGRWAMLGVAGMVLPEVLTNYGI
Sbjct: 61  PSPTYLDGSLPGDNGFDPLGLAEDPENLRWYTQAELVNGRWAMLGVAGMVLPEVLTNYGI 120

Query: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN
Sbjct: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180

Query: 181 DVGYPGGIFNPLNFEPTLEAREKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFMQHISDP 240
           DVGYPGGIFNPLNFEPTLEAREKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFMQHISDP
Sbjct: 181 DVGYPGGIFNPLNFEPTLEAREKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFMQHISDP 240

Query: 241 WHNTIVQTLR 251
           WHNTIVQTLR
Sbjct: 241 WHNTIVQTLR 250

[Close]
BLAST of Csa1G033310 vs. TrEMBL
Match: A0A0A0LSB4_CUCSA (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_1G009810 PE=3 SV=1)

HSP 1 Score: 461.1 bits (1185), Expect = 8.8e-127
Identity = 219/248 (88.31%), Postives = 230/248 (92.74%), Query Frame = 1 

Query: 1   MATVITQASATVFRPCASRSRFLSGSSGKFNRALSVKPTTSSIPNAFKVEAKKGEWLPGL 60
           MATV TQASA VFRPCA+RSRFLSGSSGK  R LSVKP ++S  ++FKVEAKKGEWLPGL
Sbjct: 1   MATVTTQASAAVFRPCAARSRFLSGSSGKLQRVLSVKPVSASSSSSFKVEAKKGEWLPGL 60

Query: 61  PSPTYLDGSLPGDNGFDPLGLAEDPENLRWYTQAELVNGRWAMLGVAGMVLPEVLTNYGI 120
           PSP YL+GSLPGDNGFDPLGLAEDPENLRWY QAELVNGRWAMLGVAGM+LPEV T  GI
Sbjct: 61  PSPMYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKIGI 120

Query: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           IN P+WYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSLPPN
Sbjct: 121 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPN 180

Query: 181 DVGYPGGIFNPLNFEPTLEAREKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFMQHISDP 240
           + GYPGGIFNPLNF PTLEA+EKEIANGRLAMLAFLGFIVQHNVTGKGPFDN +QHISDP
Sbjct: 181 ECGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHISDP 240

Query: 241 WHNTIVQT 249
           WHNTIVQT
Sbjct: 241 WHNTIVQT 248

[Close]
BLAST of Csa1G033310 vs. TrEMBL
Match: A5AEI0_VITVI (Chlorophyll a-b binding protein, chloroplastic OS=Vitis vinifera GN=VIT_17s0000g06350 PE=3 SV=1)

HSP 1 Score: 457.2 bits (1175), Expect = 1.3e-125
Identity = 217/250 (86.80%), Postives = 230/250 (92.00%), Query Frame = 1 

Query: 1   MATVITQASATVFRPCASRSRFLSGSSGKFNRALSVKPTTSSIPNAFKVEAKKGEWLPGL 60
           MATV TQASA VFRPCAS+SRFL+GSSGK  R +SVKP TSS   +FKVEAKKGEWLPGL
Sbjct: 1   MATVTTQASAAVFRPCASKSRFLTGSSGKLGREVSVKPMTSSSYRSFKVEAKKGEWLPGL 60

Query: 61  PSPTYLDGSLPGDNGFDPLGLAEDPENLRWYTQAELVNGRWAMLGVAGMVLPEVLTNYGI 120
            SP+YLDGSLPGDNGFDPLGLAEDPENL+WY QAELVN RWAMLGVAGM+LPEV T  GI
Sbjct: 61  SSPSYLDGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVAGMLLPEVFTKIGI 120

Query: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           IN P+WYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK YSLPPN
Sbjct: 121 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKNYSLPPN 180

Query: 181 DVGYPGGIFNPLNFEPTLEAREKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFMQHISDP 240
           +VGYPGGIFNPLNF PT EA+EKE+ANGRLAMLAFLGFIVQHNVTGKGPFDN +QHISDP
Sbjct: 181 EVGYPGGIFNPLNFAPTEEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHISDP 240

Query: 241 WHNTIVQTLR 251
           WHNTI+QTLR
Sbjct: 241 WHNTIIQTLR 250

[Close]
BLAST of Csa1G033310 vs. TrEMBL
Match: M1BPZ2_SOLTU (Chlorophyll a-b binding protein, chloroplastic OS=Solanum tuberosum GN=PGSC0003DMG400019508 PE=3 SV=1)

HSP 1 Score: 454.1 bits (1167), Expect = 1.1e-124
Identity = 213/249 (85.54%), Postives = 231/249 (92.77%), Query Frame = 1 

Query: 1   MATVITQASATVFRPCASRSRFLSGSSGKFNRALSVKPTTSSIPNAFKVEAKKGEWLPGL 60
           MATV TQASA +FRPCASR+RFL+GSSGK NR +S +P+TSS  N+FKVEAKKG+WLPGL
Sbjct: 1   MATVTTQASAAIFRPCASRTRFLTGSSGKLNREVSFRPSTSSSYNSFKVEAKKGQWLPGL 60

Query: 61  PSPTYLDGSLPGDNGFDPLGLAEDPENLRWYTQAELVNGRWAMLGVAGMVLPEVLTNYGI 120
            SP YLDGSLPGDNGFDPLGLAEDPENL+W+ QAELVNGRWAMLGVAGM+LPEV T+ GI
Sbjct: 61  ASPDYLDGSLPGDNGFDPLGLAEDPENLKWFIQAELVNGRWAMLGVAGMLLPEVFTSIGI 120

Query: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           +NVPKWYDAGK+EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK YSLPPN
Sbjct: 121 LNVPKWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKSYSLPPN 180

Query: 181 DVGYPGGIFNPLNFEPTLEAREKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFMQHISDP 240
             GYPGGIFNPLNF PT EA+EKE+ANGRLAMLAFLGFIVQHNVTGKGPFDN +QHISDP
Sbjct: 181 KCGYPGGIFNPLNFAPTEEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHISDP 240

Query: 241 WHNTIVQTL 250
           WHNTI+QTL
Sbjct: 241 WHNTIIQTL 249

[Close]
BLAST of Csa1G033310 vs. TrEMBL
Match: A0A0F7GYR8_9ROSI (Chlorophyll a-b binding protein, chloroplastic OS=Melianthus villosus GN=LHCA4 PE=2 SV=1)

HSP 1 Score: 453.8 bits (1166), Expect = 1.4e-124
Identity = 216/248 (87.10%), Postives = 228/248 (91.94%), Query Frame = 1 

Query: 1   MATVITQASATVFRPCASRSRFLSGSSGKFNRALSVKPTTSSIPNAFKVEAKKGEWLPGL 60
           MATV TQASATVFRPCAS+SRFLSGSS + +R LSVKP TS  P +FKVEAKKGEWLPGL
Sbjct: 1   MATVTTQASATVFRPCASKSRFLSGSSNRLSRVLSVKPITSPSPASFKVEAKKGEWLPGL 60

Query: 61  PSPTYLDGSLPGDNGFDPLGLAEDPENLRWYTQAELVNGRWAMLGVAGMVLPEVLTNYGI 120
            SP YL+GSLPGDNGFDPLGLAEDPENL+W+ QAELVNGRWAMLGVAGM+LPEV T  GI
Sbjct: 61  ASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKLGI 120

Query: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           INVP WYDAGK EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN
Sbjct: 121 INVPAWYDAGKEEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180

Query: 181 DVGYPGGIFNPLNFEPTLEAREKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFMQHISDP 240
            VGYPGGIFNPLNF PT EA+EKEIANGRLAMLAFLGF+VQHNVTGKGPFDN +QH+SDP
Sbjct: 181 KVGYPGGIFNPLNFAPTEEAKEKEIANGRLAMLAFLGFVVQHNVTGKGPFDNLLQHLSDP 240

Query: 241 WHNTIVQT 249
           WHNTIVQT
Sbjct: 241 WHNTIVQT 248

[Close]
BLAST of Csa1G033310 vs. TAIR10
Match: AT3G47470.1 (AT3G47470.1 light-harvesting chlorophyll-protein complex I subunit A4)

HSP 1 Score: 424.5 bits (1090), Expect = 4.6e-119
Identity = 202/249 (81.12%), Postives = 219/249 (87.95%), Query Frame = 1 

Query: 1   MATVITQASATVFRPCASRSRFLSGSSGKFNRALSVKPTTSSIP-NAFKVEAKKGEWLPG 60
           MATV T ASA++FRPC S+ RFL+GSSG+ NR LS     SS   ++FKVEAKKGEWLPG
Sbjct: 1   MATVTTHASASIFRPCTSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPG 60

Query: 61  LPSPTYLDGSLPGDNGFDPLGLAEDPENLRWYTQAELVNGRWAMLGVAGMVLPEVLTNYG 120
           L SP YL GSL GDNGFDPLGLAEDPENL+W+ QAELVNGRWAMLGVAGM+LPEV T  G
Sbjct: 61  LASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIG 120

Query: 121 IINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPP 180
           IINVP+WYDAGK +YFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 
Sbjct: 121 IINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPK 180

Query: 181 NDVGYPGGIFNPLNFEPTLEAREKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFMQHISD 240
            +VGYPGGIFNPLNF PT EA+EKE+ANGRLAMLAFLGF+VQHNVTGKGPF+N +QH+SD
Sbjct: 181 GEVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSD 240

Query: 241 PWHNTIVQT 249
           PWHNTIVQT
Sbjct: 241 PWHNTIVQT 249

[Close]
BLAST of Csa1G033310 vs. TAIR10
Match: AT3G61470.1 (AT3G61470.1 photosystem I light harvesting complex gene 2)

HSP 1 Score: 228.4 bits (581), Expect = 4.9e-60
Identity = 121/253 (47.83%), Postives = 150/253 (59.29%), Query Frame = 1 

Query: 1   MATVITQASATVFRPCASRSRFLSGSSGKFNRALSVKPTT--SSIPNAFKVEAKKGEWLP 60
           MA+ +  +SA       S   FL G   +  + L+V   +   +   A   +  +  W P
Sbjct: 1   MASSLCASSAIA---AISSPSFLGGKKLRLKKKLTVPAVSRPDASVRAVAADPDRPIWFP 60

Query: 61  GLPSPTYLDGSLPGDNGFDPLGLAEDPENLRWYTQAELVNGRWAMLGVAGMVLPEVLTNY 120
           G   P +LDGSLPGD GFDPLGL+ DP++L+W  QAE+V+ RWAMLG AG+ +PE LT  
Sbjct: 61  GSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKI 120

Query: 121 GIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 180
           GI+N P WY AG+ EYF   +TLFV+E IL  + E RRW DI  PGSVN DP+F    L 
Sbjct: 121 GILNTPSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPVFPNNKLT 180

Query: 181 PNDVGYPGGI-FNPLNF-----EPTLEAREKEIANGRLAMLAFLGFIVQHNVTGKGPFDN 240
             DVGYPGG+ F+PL +         E R KEI NGRLAMLA +G   QH  TG GP DN
Sbjct: 181 GTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDN 240

Query: 241 FMQHISDPWHNTI 246
              H++DP H TI
Sbjct: 241 LFAHLADPGHATI 250

[Close]
BLAST of Csa1G033310 vs. TAIR10
Match: AT1G45474.1 (AT1G45474.1 photosystem I light harvesting complex gene 5)

HSP 1 Score: 209.9 bits (533), Expect = 1.8e-54
Identity = 111/227 (48.90%), Postives = 147/227 (64.76%), Query Frame = 1 

Query: 32  RALSVKPTTSSIPNAFKVEAKKGEWLPGLPSPTYLDGSLPGDNGFDPLGLAEDPENLRWY 91
           R  SVK     I     VE  +  WLPGL  P YLDG+L GD GFDPLGL EDPE+L+WY
Sbjct: 27  RISSVKAAGGGINPTVAVE--RATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWY 86

Query: 92  TQAELVNGRWAMLGVAGMVLPEVLTNYGIINVPKWYDAGKAEY-FASSSTLFVIEFILFH 151
            QAELV+ R+AMLGVAG++  ++L   GI N+P WY+AG  ++ FAS+ TL V++F+L  
Sbjct: 87  VQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMG 146

Query: 152 YVEIRRWQDIKNPGSVNQDPIF---KQYSLPPNDVGYPGG-IFNPLNFEPTLEA----RE 211
           + E +R+ D  +PGS  ++  F    + +L   + GYPGG + NPL     ++     + 
Sbjct: 147 FAETKRYMDFVSPGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKL 206

Query: 212 KEIANGRLAMLAFLGFIVQHNVTGKGPFDNFMQHISDPWHNTIVQTL 250
           KEI NGRLAM+A LGF VQ +VT  GP DN ++H+S+PWH TI+QTL
Sbjct: 207 KEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTIIQTL 251

[Close]
BLAST of Csa1G033310 vs. TAIR10
Match: AT1G19150.1 (AT1G19150.1 photosystem I light harvesting complex gene 6)

HSP 1 Score: 207.2 bits (526), Expect = 1.2e-53
Identity = 99/193 (51.30%), Postives = 121/193 (62.69%), Query Frame = 1 

Query: 56  WLPGLPSPTYLDGSLPGDNGFDPLGLAEDPENLRWYTQAELVNGRWAMLGVAGMVLPEVL 115
           W PG   P +LDGSLPGD GFDPLGL  DP+ L+W+ QAEL++ RWAML V G+++PE L
Sbjct: 68  WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECL 127

Query: 116 TNYGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQY 175
              G I    WYDAG  EYFA S+TLFV + +L  + E RRW D+  PGSV+ +P +   
Sbjct: 128 ERLGFIENFSWYDAGSREYFADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEPKYPHK 187

Query: 176 SLPPNDVGYPGGIFNPLNF------EPTLEAREKEIANGRLAMLAFLGFIVQHNVTGKGP 235
             P  DVGYPGG++           EP +  R KEI NGRLAMLAFLGF  Q   T + P
Sbjct: 188 VNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQATYTSQDP 247

Query: 236 FDNFMQHISDPWH 243
            +N M H++DP H
Sbjct: 248 IENLMAHLADPGH 260

[Close]
BLAST of Csa1G033310 vs. TAIR10
Match: AT1G61520.1 (AT1G61520.1 photosystem I light harvesting complex gene 3)

HSP 1 Score: 159.8 bits (403), Expect = 2.1e-39
Identity = 100/230 (43.48%), Postives = 128/230 (55.65%), Query Frame = 1 

Query: 48  KVEAKKGEWLPGLPSPTYLDGSLPGDNGFDPLGLAEDPENL------RWYTQAELVNGRW 107
           K  A +  W     S +YLDGSLPGD GFDPLGL+ DPE        RW    E++NGR+
Sbjct: 48  KQGANRPLWFASSQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRF 107

Query: 108 AMLGVAGMVLPEVLTNYGIINVPK---WYD------AGKAEYFASSSTLFVIEFILFHYV 167
           AMLG AG + PE+L   G+I       W+       AG   Y+A + TLFV+E  L  + 
Sbjct: 108 AMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFA 167

Query: 168 EIRRWQDIKNPGSVNQDPIFKQYSLP-------PNDVGYPGG-IFNPLNF---EPTL-EA 227
           E RR QD  NPGS+      KQY L          +  YPGG  FNPL F   E +L E 
Sbjct: 168 EHRRLQDWYNPGSMG-----KQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKEL 227

Query: 228 REKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFMQHISDPWHNTIVQTLR 251
           + KE+ NGRLAMLA LG+ +Q  VTG GP+ N + H++DP +N ++ +L+
Sbjct: 228 KLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 271

[Close]
BLAST of Csa1G033310 vs. NCBI nr
Match: gi|449439279|ref|XP_004137413.1| (PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 518.5 bits (1334), Expect = 6.7e-144
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 1 

Query: 1   MATVITQASATVFRPCASRSRFLSGSSGKFNRALSVKPTTSSIPNAFKVEAKKGEWLPGL 60
           MATVITQASATVFRPCASRSRFLSGSSGKFNRALSVKPTTSSIPNAFKVEAKKGEWLPGL
Sbjct: 1   MATVITQASATVFRPCASRSRFLSGSSGKFNRALSVKPTTSSIPNAFKVEAKKGEWLPGL 60

Query: 61  PSPTYLDGSLPGDNGFDPLGLAEDPENLRWYTQAELVNGRWAMLGVAGMVLPEVLTNYGI 120
           PSPTYLDGSLPGDNGFDPLGLAEDPENLRWYTQAELVNGRWAMLGVAGMVLPEVLTNYGI
Sbjct: 61  PSPTYLDGSLPGDNGFDPLGLAEDPENLRWYTQAELVNGRWAMLGVAGMVLPEVLTNYGI 120

Query: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN
Sbjct: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180

Query: 181 DVGYPGGIFNPLNFEPTLEAREKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFMQHISDP 240
           DVGYPGGIFNPLNFEPTLEAREKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFMQHISDP
Sbjct: 181 DVGYPGGIFNPLNFEPTLEAREKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFMQHISDP 240

Query: 241 WHNTIVQTLR 251
           WHNTIVQTLR
Sbjct: 241 WHNTIVQTLR 250

[Close]
BLAST of Csa1G033310 vs. NCBI nr
Match: gi|449440798|ref|XP_004138171.1| (PREDICTED: chlorophyll a-b binding protein P4, chloroplastic [Cucumis sativus])

HSP 1 Score: 461.1 bits (1185), Expect = 1.3e-126
Identity = 219/248 (88.31%), Postives = 230/248 (92.74%), Query Frame = 1 

Query: 1   MATVITQASATVFRPCASRSRFLSGSSGKFNRALSVKPTTSSIPNAFKVEAKKGEWLPGL 60
           MATV TQASA VFRPCA+RSRFLSGSSGK  R LSVKP ++S  ++FKVEAKKGEWLPGL
Sbjct: 1   MATVTTQASAAVFRPCAARSRFLSGSSGKLQRVLSVKPVSASSSSSFKVEAKKGEWLPGL 60

Query: 61  PSPTYLDGSLPGDNGFDPLGLAEDPENLRWYTQAELVNGRWAMLGVAGMVLPEVLTNYGI 120
           PSP YL+GSLPGDNGFDPLGLAEDPENLRWY QAELVNGRWAMLGVAGM+LPEV T  GI
Sbjct: 61  PSPMYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKIGI 120

Query: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           IN P+WYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSLPPN
Sbjct: 121 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPN 180

Query: 181 DVGYPGGIFNPLNFEPTLEAREKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFMQHISDP 240
           + GYPGGIFNPLNF PTLEA+EKEIANGRLAMLAFLGFIVQHNVTGKGPFDN +QHISDP
Sbjct: 181 ECGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHISDP 240

Query: 241 WHNTIVQT 249
           WHNTIVQT
Sbjct: 241 WHNTIVQT 248

[Close]
BLAST of Csa1G033310 vs. NCBI nr
Match: gi|697129298|ref|XP_009618704.1| (PREDICTED: chlorophyll a-b binding protein P4, chloroplastic [Nicotiana tomentosiformis])

HSP 1 Score: 460.7 bits (1184), Expect = 1.7e-126
Identity = 217/249 (87.15%), Postives = 231/249 (92.77%), Query Frame = 1 

Query: 1   MATVITQASATVFRPCASRSRFLSGSSGKFNRALSVKPTTSSIPNAFKVEAKKGEWLPGL 60
           MATV TQASA +FRPCAS++RFLSGSSGK NR +S KP TSS  N+FKVEAKKG+WLPGL
Sbjct: 1   MATVTTQASAAIFRPCASKTRFLSGSSGKLNREVSFKPLTSSSYNSFKVEAKKGQWLPGL 60

Query: 61  PSPTYLDGSLPGDNGFDPLGLAEDPENLRWYTQAELVNGRWAMLGVAGMVLPEVLTNYGI 120
            SPTYLDGSLPGDNGFDPLGLAEDPENL+W+ QAELVNGRWAMLGVAGM+LPEV TN GI
Sbjct: 61  ASPTYLDGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTNIGI 120

Query: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           +NVPKWYDAGK EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK YSLPPN
Sbjct: 121 LNVPKWYDAGKEEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKSYSLPPN 180

Query: 181 DVGYPGGIFNPLNFEPTLEAREKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFMQHISDP 240
           +VGYPGGIFNPLNF PT EA+EKEIANGRLAMLAFLGFIVQHNV GKGPFDN +QH+SDP
Sbjct: 181 EVGYPGGIFNPLNFAPTAEAKEKEIANGRLAMLAFLGFIVQHNVVGKGPFDNLLQHLSDP 240

Query: 241 WHNTIVQTL 250
           WHNTIVQTL
Sbjct: 241 WHNTIVQTL 249

[Close]
BLAST of Csa1G033310 vs. NCBI nr
Match: gi|1009132600|ref|XP_015883459.1| (PREDICTED: chlorophyll a-b binding protein P4, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 460.3 bits (1183), Expect = 2.2e-126
Identity = 217/250 (86.80%), Postives = 232/250 (92.80%), Query Frame = 1 

Query: 1   MATVITQASATVFRPCASRSRFLSGSSGKFNRALSVKPTTSSIPNAFKVEAKKGEWLPGL 60
           MATV TQASA VFRPCAS+SRFLSGSSGK +R LSVKP+ +    +FKVEAKKGEWLPGL
Sbjct: 1   MATVTTQASAAVFRPCASKSRFLSGSSGKLSRDLSVKPSATPSATSFKVEAKKGEWLPGL 60

Query: 61  PSPTYLDGSLPGDNGFDPLGLAEDPENLRWYTQAELVNGRWAMLGVAGMVLPEVLTNYGI 120
           PSP YL+GSLPGDNGFDPLGLAEDPENL+WY QAELVNGRWAMLGV GM+LPEVLT+ GI
Sbjct: 61  PSPGYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNGRWAMLGVTGMLLPEVLTSIGI 120

Query: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSLPPN
Sbjct: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPN 180

Query: 181 DVGYPGGIFNPLNFEPTLEAREKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFMQHISDP 240
           + GYPGGIFNPLNF PTLEA+EKE+ANGRLAMLAFLGFIVQHNVTGKGPFDN +QH+SDP
Sbjct: 181 ECGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHLSDP 240

Query: 241 WHNTIVQTLR 251
           WHNTI+QT R
Sbjct: 241 WHNTIIQTFR 250

[Close]
BLAST of Csa1G033310 vs. NCBI nr
Match: gi|659105939|ref|XP_008453211.1| (PREDICTED: chlorophyll a-b binding protein P4, chloroplastic [Cucumis melo])

HSP 1 Score: 459.5 bits (1181), Expect = 3.7e-126
Identity = 217/248 (87.50%), Postives = 231/248 (93.15%), Query Frame = 1 

Query: 1   MATVITQASATVFRPCASRSRFLSGSSGKFNRALSVKPTTSSIPNAFKVEAKKGEWLPGL 60
           MATV TQASA VFRPCA+RSRFLSGSSGK +R LSVKP ++S  ++FKVEAKKGEWLPGL
Sbjct: 1   MATVTTQASAAVFRPCAARSRFLSGSSGKLHRVLSVKPVSASSSSSFKVEAKKGEWLPGL 60

Query: 61  PSPTYLDGSLPGDNGFDPLGLAEDPENLRWYTQAELVNGRWAMLGVAGMVLPEVLTNYGI 120
           PSP YL+GSLPGDNGFDPLGLAEDPENLRW+ QAELVNGRWAMLGVAGM+LPEV T  GI
Sbjct: 61  PSPAYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI 120

Query: 121 INVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPN 180
           IN P+WYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPG VNQDPIFKQYSLPPN
Sbjct: 121 INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPN 180

Query: 181 DVGYPGGIFNPLNFEPTLEAREKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFMQHISDP 240
           + GYPGGIFNPLNF PTLEA+EKE+ANGRLAMLAFLGFIVQHNVTGKGPFDN +QHISDP
Sbjct: 181 ECGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHISDP 240

Query: 241 WHNTIVQT 249
           WHNTIVQT
Sbjct: 241 WHNTIVQT 248

The following BLAST results are available for this feature:
BLAST of Csa1G033310 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CB24_PEA4.7e-12183.53Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE... [more]
CA4_ARATH8.2e-11881.12Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=LHCA... [more]
CB120_HORVU8.6e-8365.78Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulga... [more]
CB12_PETHY4.6e-6049.79Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1[more]
CB12_SOLLC2.3e-5949.57Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7... [more]
BLAST of Csa1G033310 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTE5_CUCSA4.7e-144100.00Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_1G03331... [more]
A0A0A0LSB4_CUCSA8.8e-12788.31Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_1G00981... [more]
A5AEI0_VITVI1.3e-12586.80Chlorophyll a-b binding protein, chloroplastic OS=Vitis vinifera GN=VIT_17s0000g... [more]
M1BPZ2_SOLTU1.1e-12485.54Chlorophyll a-b binding protein, chloroplastic OS=Solanum tuberosum GN=PGSC0003D... [more]
A0A0F7GYR8_9ROSI1.4e-12487.10Chlorophyll a-b binding protein, chloroplastic OS=Melianthus villosus GN=LHCA4 P... [more]
BLAST of Csa1G033310 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G47470.14.6e-11981.12 light-harvesting chlorophyll-protein complex I subunit A4[more]
AT3G61470.14.9e-6047.83 photosystem I light harvesting complex gene 2[more]
AT1G45474.11.8e-5448.90 photosystem I light harvesting complex gene 5[more]
AT1G19150.11.2e-5351.30 photosystem I light harvesting complex gene 6[more]
AT1G61520.12.1e-3943.48 photosystem I light harvesting complex gene 3[more]
BLAST of Csa1G033310 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449439279|ref|XP_004137413.1|6.7e-144100.00PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like [Cucumis sativ... [more]
gi|449440798|ref|XP_004138171.1|1.3e-12688.31PREDICTED: chlorophyll a-b binding protein P4, chloroplastic [Cucumis sativus][more]
gi|697129298|ref|XP_009618704.1|1.7e-12687.15PREDICTED: chlorophyll a-b binding protein P4, chloroplastic [Nicotiana tomentos... [more]
gi|1009132600|ref|XP_015883459.1|2.2e-12686.80PREDICTED: chlorophyll a-b binding protein P4, chloroplastic [Ziziphus jujuba][more]
gi|659105939|ref|XP_008453211.1|3.7e-12687.50PREDICTED: chlorophyll a-b binding protein P4, chloroplastic [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001344Chloro_AB-bd_pln
IPR022796Chloroa_b-bind
IPR023329Chlorophyll_a/b-bd_dom_sf
Vocabulary: Biological Process
TermDefinition
GO:0009765photosynthesis, light harvesting
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030003 cellular cation homeostasis
biological_process GO:0009664 plant-type cell wall organization
biological_process GO:0070838 divalent metal ion transport
biological_process GO:0009765 photosynthesis, light harvesting
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0009645 response to low light intensity stimulus
biological_process GO:0080167 response to karrikin
biological_process GO:0009644 response to high light intensity
biological_process GO:0009409 response to cold
biological_process GO:0009768 photosynthesis, light harvesting in photosystem I
biological_process GO:0019344 cysteine biosynthetic process
cellular_component GO:0005618 cell wall
cellular_component GO:0005576 extracellular region
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016020 membrane
cellular_component GO:0010287 plastoglobule
cellular_component GO:0009523 photosystem II
cellular_component GO:0009522 photosystem I
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0009941 chloroplast envelope
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0031409 pigment binding
molecular_function GO:0019904 protein domain specific binding
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU103196cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G033310.1Csa1G033310.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU103196CU103196transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001344Chlorophyll A-B binding protein, plantPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 1..250
score: 5.7E
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 63..222
score: 3.0
IPR023329Chlorophyll a/b binding protein domainGENE3DG3DSA:1.10.3460.10coord: 55..248
score: 1.6
IPR023329Chlorophyll a/b binding protein domainunknownSSF103511Chlorophyll a-b binding proteincoord: 53..249
score: 5.36
NoneNo IPR availablePANTHERPTHR21649:SF17CHLOROPHYLL A-B BINDING PROTEIN 4, CHLOROPLASTICcoord: 1..250
score: 5.7E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G033310Cla019105Watermelon (97103) v1cuwmB096
Csa1G033310Cla018600Watermelon (97103) v1cuwmB062
Csa1G033310MELO3C017180Melon (DHL92) v3.5.1cumeB056
Csa1G033310MELO3C001992Melon (DHL92) v3.5.1cumeB027
Csa1G033310ClCG04G012170Watermelon (Charleston Gray)cuwcgB057
Csa1G033310ClCG06G016140Watermelon (Charleston Gray)cuwcgB083
Csa1G033310Lsi02G000810Bottle gourd (USVL1VR-Ls)culsiB022
Csa1G033310Lsi06G014580Bottle gourd (USVL1VR-Ls)culsiB072
Csa1G033310MELO3C001992.2Melon (DHL92) v3.6.1cumedB022
Csa1G033310MELO3C017180.2Melon (DHL92) v3.6.1cumedB048
Csa1G033310Cla97C06G125710Watermelon (97103) v2cuwmbB080
Csa1G033310Cla97C04G079070Watermelon (97103) v2cuwmbB054
Csa1G033310Bhi08G000965Wax gourdcuwgoB050
Csa1G033310CSPI01G02360Wild cucumber (PI 183967)cpicuB005
Csa1G033310CSPI01G05710Wild cucumber (PI 183967)cpicuB000
Csa1G033310Cucsa.112850Cucumber (Gy14) v1cgycuB137
Csa1G033310Cucsa.197770Cucumber (Gy14) v1cgycuB300
Csa1G033310CmaCh01G007930Cucurbita maxima (Rimu)cmacuB428
Csa1G033310CmaCh10G001970Cucurbita maxima (Rimu)cmacuB054
Csa1G033310CmaCh11G001390Cucurbita maxima (Rimu)cmacuB105
Csa1G033310CmoCh01G008340Cucurbita moschata (Rifu)cmocuB417
Csa1G033310CmoCh11G001720Cucurbita moschata (Rifu)cmocuB077
Csa1G033310CmoCh10G002130Cucurbita moschata (Rifu)cmocuB043
Csa1G033310Cp4.1LG04g14870Cucurbita pepo (Zucchini)cpecuB655
Csa1G033310Cp4.1LG02g10380Cucurbita pepo (Zucchini)cpecuB533
Csa1G033310Cp4.1LG18g07870Cucurbita pepo (Zucchini)cpecuB366
Csa1G033310CsGy1G005440Cucumber (Gy14) v2cgybcuB001
Csa1G033310CsGy1G002400Cucumber (Gy14) v2cgybcuB004
Csa1G033310Carg17957Silver-seed gourdcarcuB0495
Csa1G033310Carg21680Silver-seed gourdcarcuB0052
Csa1G033310Carg18193Silver-seed gourdcarcuB0639
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Csa1G033310Csa1G009810Cucumber (Chinese Long) v2cucuB000
The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G033310Melon (DHL92) v3.6.1cumedB001
Csa1G033310Melon (DHL92) v3.6.1cumedB003
Csa1G033310Melon (DHL92) v3.6.1cumedB056
Csa1G033310Silver-seed gourdcarcuB0106
Csa1G033310Silver-seed gourdcarcuB0417
Csa1G033310Watermelon (97103) v2cuwmbB059
Csa1G033310Wax gourdcuwgoB010
Csa1G033310Wax gourdcuwgoB069
Csa1G033310Wax gourdcuwgoB115
Csa1G033310Cucumber (Chinese Long) v2cucuB032
Csa1G033310Cucumber (Chinese Long) v2cucuB028
Csa1G033310Cucumber (Chinese Long) v2cucuB037
Csa1G033310Cucumber (Gy14) v1cgycuB227
Csa1G033310Cucumber (Gy14) v1cgycuB403
Csa1G033310Cucurbita maxima (Rimu)cmacuB206
Csa1G033310Cucurbita maxima (Rimu)cmacuB403
Csa1G033310Cucurbita maxima (Rimu)cmacuB684
Csa1G033310Cucurbita moschata (Rifu)cmocuB191
Csa1G033310Cucurbita moschata (Rifu)cmocuB391
Csa1G033310Cucurbita moschata (Rifu)cmocuB674
Csa1G033310Cucurbita moschata (Rifu)cmocuB675
Csa1G033310Melon (DHL92) v3.5.1cumeB006
Csa1G033310Melon (DHL92) v3.5.1cumeB008
Csa1G033310Watermelon (Charleston Gray)cuwcgB061
Csa1G033310Watermelon (97103) v1cuwmB038
Csa1G033310Cucurbita pepo (Zucchini)cpecuB026
Csa1G033310Cucurbita pepo (Zucchini)cpecuB379
Csa1G033310Cucurbita pepo (Zucchini)cpecuB380
Csa1G033310Cucurbita pepo (Zucchini)cpecuB517
Csa1G033310Bottle gourd (USVL1VR-Ls)culsiB053
Csa1G033310Cucumber (Gy14) v2cgybcuB197
Csa1G033310Cucumber (Gy14) v2cgybcuB201