Csa1G033150 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G033150
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 3529865 .. 3530137 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATTCACAATCTCAGCTTCACCTTCAACTCAATGTCCAAAAAATATTAACATTATCGATGGTAGAGGAGAAGAAATCTGGTGGTTCATGGAATGTGGATAGCTCTCCTTTTGTAGAAAGAAGAGAAGATCTCAATTACCCAATTGCATTCTCATGGTTGACCAGATTGAATGAACATCCAATTGCAAAGGTGATAGATCCTTCCAAGGAGAAGGTTATGGGTCATCTCATGGTGAAATCTAACTCTCAAATTTACAAATCTCATAGTTGA

mRNA sequence

ATGCATTCACAATCTCAGCTTCACCTTCAACTCAATGTCCAAAAAATATTAACATTATCGATGGTAGAGGAGAAGAAATCTGGTGGTTCATGGAATGTGGATAGCTCTCCTTTTGTAGAAAGAAGAGAAGATCTCAATTACCCAATTGCATTCTCATGGTTGACCAGATTGAATGAACATCCAATTGCAAAGGTGATAGATCCTTCCAAGGAGAAGGTTATGGGTCATCTCATGGTGAAATCTAACTCTCAAATTTACAAATCTCATAGTTGA

Coding sequence (CDS)

ATGCATTCACAATCTCAGCTTCACCTTCAACTCAATGTCCAAAAAATATTAACATTATCGATGGTAGAGGAGAAGAAATCTGGTGGTTCATGGAATGTGGATAGCTCTCCTTTTGTAGAAAGAAGAGAAGATCTCAATTACCCAATTGCATTCTCATGGTTGACCAGATTGAATGAACATCCAATTGCAAAGGTGATAGATCCTTCCAAGGAGAAGGTTATGGGTCATCTCATGGTGAAATCTAACTCTCAAATTTACAAATCTCATAGTTGA

Protein sequence

MHSQSQLHLQLNVQKILTLSMVEEKKSGGSWNVDSSPFVERREDLNYPIAFSWLTRLNEHPIAKVIDPSKEKVMGHLMVKSNSQIYKSHS*
Homology
[Close]
BLAST of Csa1G033150 vs. TrEMBL
Match: A0A0A0LQ42_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G033150 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 7.5e-44
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 

Query: 1  MHSQSQLHLQLNVQKILTLSMVEEKKSGGSWNVDSSPFVERREDLNYPIAFSWLTRLNEH 60
          MHSQSQLHLQLNVQKILTLSMVEEKKSGGSWNVDSSPFVERREDLNYPIAFSWLTRLNEH
Sbjct: 1  MHSQSQLHLQLNVQKILTLSMVEEKKSGGSWNVDSSPFVERREDLNYPIAFSWLTRLNEH 60

Query: 61 PIAKVIDPSKEKVMGHLMVKSNSQIYKSHS 91
          PIAKVIDPSKEKVMGHLMVKSNSQIYKSHS
Sbjct: 61 PIAKVIDPSKEKVMGHLMVKSNSQIYKSHS 90

[Close]
BLAST of Csa1G033150 vs. NCBI nr
Match: gi|700208899|gb|KGN63995.1| (hypothetical protein Csa_1G033150 [Cucumis sativus])

HSP 1 Score: 184.1 bits (466), Expect = 1.1e-43
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 

Query: 1  MHSQSQLHLQLNVQKILTLSMVEEKKSGGSWNVDSSPFVERREDLNYPIAFSWLTRLNEH 60
          MHSQSQLHLQLNVQKILTLSMVEEKKSGGSWNVDSSPFVERREDLNYPIAFSWLTRLNEH
Sbjct: 1  MHSQSQLHLQLNVQKILTLSMVEEKKSGGSWNVDSSPFVERREDLNYPIAFSWLTRLNEH 60

Query: 61 PIAKVIDPSKEKVMGHLMVKSNSQIYKSHS 91
          PIAKVIDPSKEKVMGHLMVKSNSQIYKSHS
Sbjct: 61 PIAKVIDPSKEKVMGHLMVKSNSQIYKSHS 90

The following BLAST results are available for this feature:
BLAST of Csa1G033150 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQ42_CUCSA7.5e-44100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G033150 PE=4 SV=1[more]
BLAST of Csa1G033150 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208899|gb|KGN63995.1|1.1e-43100.00hypothetical protein Csa_1G033150 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU096913cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G033150.1Csa1G033150.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU096913CU096913transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G033150CSPI01G05560Wild cucumber (PI 183967)cpicuB000
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G033150Cucurbita pepo (Zucchini)cpecuB026
Csa1G033150Cucurbita pepo (Zucchini)cpecuB366
Csa1G033150Cucurbita pepo (Zucchini)cpecuB379
Csa1G033150Cucurbita pepo (Zucchini)cpecuB380
Csa1G033150Cucurbita pepo (Zucchini)cpecuB517
Csa1G033150Cucurbita pepo (Zucchini)cpecuB533
Csa1G033150Cucurbita pepo (Zucchini)cpecuB655
Csa1G033150Bottle gourd (USVL1VR-Ls)culsiB022
Csa1G033150Bottle gourd (USVL1VR-Ls)culsiB053
Csa1G033150Bottle gourd (USVL1VR-Ls)culsiB072
Csa1G033150Cucumber (Gy14) v2cgybcuB001
Csa1G033150Cucumber (Gy14) v2cgybcuB004
Csa1G033150Cucumber (Gy14) v2cgybcuB197
Csa1G033150Cucumber (Gy14) v2cgybcuB201
Csa1G033150Melon (DHL92) v3.6.1cumedB022
Csa1G033150Melon (DHL92) v3.6.1cumedB001
Csa1G033150Melon (DHL92) v3.6.1cumedB003
Csa1G033150Melon (DHL92) v3.6.1cumedB048
Csa1G033150Silver-seed gourdcarcuB0106
Csa1G033150Silver-seed gourdcarcuB0052
Csa1G033150Silver-seed gourdcarcuB0417
Csa1G033150Silver-seed gourdcarcuB0639
Csa1G033150Watermelon (97103) v2cuwmbB054
Csa1G033150Watermelon (97103) v2cuwmbB059
Csa1G033150Watermelon (97103) v2cuwmbB080
Csa1G033150Wax gourdcuwgoB050
Csa1G033150Wax gourdcuwgoB069
Csa1G033150Wax gourdcuwgoB115
Csa1G033150Cucumber (Chinese Long) v2cucuB000
Csa1G033150Cucumber (Chinese Long) v2cucuB032
Csa1G033150Cucumber (Chinese Long) v2cucuB028
Csa1G033150Cucumber (Gy14) v1cgycuB227
Csa1G033150Cucumber (Gy14) v1cgycuB137
Csa1G033150Cucumber (Gy14) v1cgycuB300
Csa1G033150Cucumber (Gy14) v1cgycuB403
Csa1G033150Cucurbita maxima (Rimu)cmacuB054
Csa1G033150Cucurbita maxima (Rimu)cmacuB105
Csa1G033150Cucurbita maxima (Rimu)cmacuB206
Csa1G033150Cucurbita maxima (Rimu)cmacuB403
Csa1G033150Cucurbita maxima (Rimu)cmacuB428
Csa1G033150Cucurbita maxima (Rimu)cmacuB684
Csa1G033150Cucurbita moschata (Rifu)cmocuB043
Csa1G033150Cucurbita moschata (Rifu)cmocuB077
Csa1G033150Cucurbita moschata (Rifu)cmocuB191
Csa1G033150Cucurbita moschata (Rifu)cmocuB391
Csa1G033150Cucurbita moschata (Rifu)cmocuB417
Csa1G033150Cucurbita moschata (Rifu)cmocuB674
Csa1G033150Cucurbita moschata (Rifu)cmocuB675
Csa1G033150Melon (DHL92) v3.5.1cumeB006
Csa1G033150Melon (DHL92) v3.5.1cumeB008
Csa1G033150Melon (DHL92) v3.5.1cumeB027
Csa1G033150Melon (DHL92) v3.5.1cumeB056
Csa1G033150Watermelon (Charleston Gray)cuwcgB057
Csa1G033150Watermelon (Charleston Gray)cuwcgB061
Csa1G033150Watermelon (Charleston Gray)cuwcgB083
Csa1G033150Watermelon (97103) v1cuwmB038
Csa1G033150Watermelon (97103) v1cuwmB062
Csa1G033150Watermelon (97103) v1cuwmB096