Csa1G033110 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G033110
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 3522011 .. 3523678 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATAAAAGGTGATTTGAGAAGTACATTTGCCTGTATAAATCAGTTATTATTTGAATTCCTCATATTCTCAAGAATTGATAAAATATCTGTTTTCGACATTGACACTCGTGAATTGAACTATCACAGAGTAGTGGAAGCCAGGCCGTTGTTGTATAAAGTAGCATATCAGAAGGCAAAGCTTCAATTGGAGTTTGTAAAGCGTGATTGGTATCTGGTACTGTATTTTCTGGTGATTTTAGTTTTTAAATTATTGTTGGTGATATATAATTAAATTTGCCTTCAACCACCAGCATAAGCTTTCGGATGGATTGGTGGTTTAATATACTATCAGAGCAGGAGGTCCTGTCTTCAAGCTCCTGCATTGTTGTTTTCTTCCCGATTAAAATCAATTTCCATTTATTGGGCCTTTCAATATTTCAAGCCCACAAGTATACAAGTGAGGTAAAATTGATTCCACTTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGAACCACCAATTCATCCAAAAGCTTAAGCTAGTGGTTGAAGGCAAATTTAATTATATATCACCAACAGTGTATACCTCTTCAATAAATTTGTATGGCAATTTCTTGGTGAATCACAGTAAAGCATGAATCTGTAACTTTGGATGCAAAGATAAAGGCACTAAGCAAATATTTTTCAACATACTGTAAGTTGAAAGGAACGACCAATTCAATTGACATCCTTGGATCAGTTATTGATCATTTAAGGAGAGAAAGCTGTGCAGGCCTATTTATCAGGATTTGCAGGTTTCTACATTCACTAATTTTCTATTTGACTTAAGATTATAATTTCTTGAATGTCTGATATAGTTTTTTGAACATTATATGTACTTTTTCAGGTGTTGAAAGTAGATGATTTTGAGGAAAAAAAATGATCACTGCACCAGACTTCTCAACTACCTTGGTTATGCCTGCCAAAGGTTGGAATTTTTTTTCTTTCTGTTTTTCTGTGTTTGTTTAAGAGCAATTAATGATGGATGAAATTTGGAAAAAAGGATTGATATTTGGAGCATATTCAGTAGGATCTCAATTAAAAAGAATTGAAAAAAAGAAAGAAAAAAGTTTGGTGGTGTGAGATTGAAAATAAAGTAGCAAAGAATTTTTTTTGAAAAATGCAAGTCCTAAAGATTTGTGGTAAAGCACGTAGCTTTCTGAATTCAACCCAAAACTTAAGACTTGTTCTTTGTTCTTTTTGTTATTCTTCCCTTGTTTTTGAATGGATTTTCAATGATTTCTGTGAGGGTAGGGATGCTAGGAAGGAAATAGAGCTAAAAGGTGCCAGGAGAGAGATGGAACTGGAAGATACTGAGCTTGGAGAAGGAGAAGCTTGGTCCTACTAGAACAATGAAGATTTTGATTTAAATATCGACACTGATATTGCTCTCTCCTACATCGTAAGCCTTTTGTGCATCTTGTTTTTATATTGCAACTTCCAGATTCTCAATTTGACCTTGTTTACAGAATTAGATCCAGACTATGATGTTTTATTGCTTAGGATTTTGGATGATTTGATCTTTGATTCTCTGGAAATATTGAAATCTCATCCTCCATCTTTCTCTCTTATCTTCTTGTTTTTAGCTTAATGAATTTAATCTTCTGTAGGTTCTTTTGAATGAAGATGATTCT

mRNA sequence

ATGCATAAAAGAGTAGTGGAAGCCAGGCCGTTGTTGTATAAAGTAGCATATCAGAAGGCAAAGCTTCAATTGGAGTTTGTAAAGCGTGATTGGTATCTGCATGAATCTGTAACTTTGGATGCAAAGATAAAGGCACTAAGCAAATATTTTTCAACATACTGTAAGTTGAAAGGAACGACCAATTCAATTGACATCCTTGGATCAGTTATTGATCATTTAAGGAGAGAAAGCTGTGCAGGCCTATTTATCAGGATTTGCAGGTGTTGA

Coding sequence (CDS)

ATGCATAAAAGAGTAGTGGAAGCCAGGCCGTTGTTGTATAAAGTAGCATATCAGAAGGCAAAGCTTCAATTGGAGTTTGTAAAGCGTGATTGGTATCTGCATGAATCTGTAACTTTGGATGCAAAGATAAAGGCACTAAGCAAATATTTTTCAACATACTGTAAGTTGAAAGGAACGACCAATTCAATTGACATCCTTGGATCAGTTATTGATCATTTAAGGAGAGAAAGCTGTGCAGGCCTATTTATCAGGATTTGCAGGTGTTGA

Protein sequence

MHKRVVEARPLLYKVAYQKAKLQLEFVKRDWYLHESVTLDAKIKALSKYFSTYCKLKGTTNSIDILGSVIDHLRRESCAGLFIRICRC*
Homology
[Close]
BLAST of Csa1G033110 vs. TrEMBL
Match: A0A0A0LVH7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G033110 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 4.8e-43
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 

Query: 1  MHKRVVEARPLLYKVAYQKAKLQLEFVKRDWYLHESVTLDAKIKALSKYFSTYCKLKGTT 60
          MHKRVVEARPLLYKVAYQKAKLQLEFVKRDWYLHESVTLDAKIKALSKYFSTYCKLKGTT
Sbjct: 1  MHKRVVEARPLLYKVAYQKAKLQLEFVKRDWYLHESVTLDAKIKALSKYFSTYCKLKGTT 60

Query: 61 NSIDILGSVIDHLRRESCAGLFIRICRC 89
          NSIDILGSVIDHLRRESCAGLFIRICRC
Sbjct: 61 NSIDILGSVIDHLRRESCAGLFIRICRC 88

[Close]
BLAST of Csa1G033110 vs. TrEMBL
Match: A0A0A0K6D4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G031030 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.9e-13
Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 1 

Query: 34   HESVTLDAKIKALSKYFSTYCKLKGTTNSIDILGSVIDHLR-RESCAGLF 83
            HESVTLDAKIKALSKYFSTYCKLKG T+S+DILGSVIDHLR R+ C  ++
Sbjct: 1073 HESVTLDAKIKALSKYFSTYCKLKGMTSSVDILGSVIDHLRKRKLCRSIY 1122

[Close]
BLAST of Csa1G033110 vs. TrEMBL
Match: A0A0A0K6D4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G031030 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 8.2e-11
Identity = 41/73 (56.16%), Postives = 47/73 (64.38%), Query Frame = 1 

Query: 1    MHKRVVEARPLLYKVAYQKAKLQLEFVKRDWYLHESVTLDAKIKALSKYFSTYCKLKGTT 60
            MHKRV EARPLLYKVAYQKAKLQLEFVKRDWYL+       + K+LS Y      LK   
Sbjct: 984  MHKRVEEARPLLYKVAYQKAKLQLEFVKRDWYLN-------RAKSLSSYIENLQMLKLNY 1043

Query: 61   NSIDILGSVIDHL 74
            + +   GS   H+
Sbjct: 1044 DRLTDCGSKSSHV 1049

[Close]
BLAST of Csa1G033110 vs. NCBI nr
Match: gi|700208895|gb|KGN63991.1| (hypothetical protein Csa_1G033110 [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 6.9e-43
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 

Query: 1  MHKRVVEARPLLYKVAYQKAKLQLEFVKRDWYLHESVTLDAKIKALSKYFSTYCKLKGTT 60
          MHKRVVEARPLLYKVAYQKAKLQLEFVKRDWYLHESVTLDAKIKALSKYFSTYCKLKGTT
Sbjct: 1  MHKRVVEARPLLYKVAYQKAKLQLEFVKRDWYLHESVTLDAKIKALSKYFSTYCKLKGTT 60

Query: 61 NSIDILGSVIDHLRRESCAGLFIRICRC 89
          NSIDILGSVIDHLRRESCAGLFIRICRC
Sbjct: 61 NSIDILGSVIDHLRRESCAGLFIRICRC 88

[Close]
BLAST of Csa1G033110 vs. NCBI nr
Match: gi|449453758|ref|XP_004144623.1| (PREDICTED: uncharacterized protein LOC101212645 isoform X1 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 5.7e-13
Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 1 

Query: 34   HESVTLDAKIKALSKYFSTYCKLKGTTNSIDILGSVIDHLR-RESCAGLF 83
            HESVTLDAKIKALSKYFSTYCKLKG T+S+DILGSVIDHLR R+ C  ++
Sbjct: 1073 HESVTLDAKIKALSKYFSTYCKLKGMTSSVDILGSVIDHLRKRKLCRSIY 1122

[Close]
BLAST of Csa1G033110 vs. NCBI nr
Match: gi|449453758|ref|XP_004144623.1| (PREDICTED: uncharacterized protein LOC101212645 isoform X1 [Cucumis sativus])

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-10
Identity = 41/73 (56.16%), Postives = 47/73 (64.38%), Query Frame = 1 

Query: 1    MHKRVVEARPLLYKVAYQKAKLQLEFVKRDWYLHESVTLDAKIKALSKYFSTYCKLKGTT 60
            MHKRV EARPLLYKVAYQKAKLQLEFVKRDWYL+       + K+LS Y      LK   
Sbjct: 984  MHKRVEEARPLLYKVAYQKAKLQLEFVKRDWYLN-------RAKSLSSYIENLQMLKLNY 1043

Query: 61   NSIDILGSVIDHL 74
            + +   GS   H+
Sbjct: 1044 DRLTDCGSKSSHV 1049


HSP 2 Score: 82.0 bits (201), Expect = 5.7e-13
Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 1 

Query: 34   HESVTLDAKIKALSKYFSTYCKLKGTTNSIDILGSVIDHLR-RESCAGLF 83
            HESVTLDAKIKALSKYFSTYCKLKG T+S+DILGSVIDHLR R+ C  ++
Sbjct: 1073 HESVTLDAKIKALSKYFSTYCKLKGMTSSVDILGSVIDHLRKRKLCRSIY 1122

[Close]
BLAST of Csa1G033110 vs. NCBI nr
Match: gi|778723407|ref|XP_011658648.1| (PREDICTED: uncharacterized protein LOC101212645 isoform X2 [Cucumis sativus])

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-10
Identity = 41/73 (56.16%), Postives = 47/73 (64.38%), Query Frame = 1 

Query: 1    MHKRVVEARPLLYKVAYQKAKLQLEFVKRDWYLHESVTLDAKIKALSKYFSTYCKLKGTT 60
            MHKRV EARPLLYKVAYQKAKLQLEFVKRDWYL+       + K+LS Y      LK   
Sbjct: 984  MHKRVEEARPLLYKVAYQKAKLQLEFVKRDWYLN-------RAKSLSSYIENLQMLKLNY 1043

Query: 61   NSIDILGSVIDHL 74
            + +   GS   H+
Sbjct: 1044 DRLTDCGSKSSHV 1049


HSP 2 Score: 76.6 bits (187), Expect = 2.4e-11
Identity = 38/50 (76.00%), Postives = 42/50 (84.00%), Query Frame = 1 

Query: 34   HESVTLDAKIKALSKYFSTYCKLKGTTNSIDILGSVIDHLR-RESCAGLF 83
            HE VTLD KIKALSKYFSTYCKLKG T+S DILGSVIDHLR R+ C  ++
Sbjct: 1071 HEFVTLDGKIKALSKYFSTYCKLKGMTSSTDILGSVIDHLRKRKLCRSIY 1120

[Close]
BLAST of Csa1G033110 vs. NCBI nr
Match: gi|659124180|ref|XP_008462023.1| (PREDICTED: dentin sialophosphoprotein isoform X2 [Cucumis melo])

HSP 1 Score: 68.9 bits (167), Expect = 5.0e-09
Identity = 36/56 (64.29%), Postives = 43/56 (76.79%), Query Frame = 1 

Query: 1    MHKRVVEARPLLYKVAYQKAKLQLEFVKRDWYLHESVTLDAKIKALSKYFSTYCKL 57
            MHKRVVEAR LLYKVAYQKAKLQLEFVKRD YL+ + +L ++I+ L      Y +L
Sbjct: 982  MHKRVVEARLLLYKVAYQKAKLQLEFVKRDLYLNRAQSLSSRIENLQMLKLNYDRL 1037


HSP 2 Score: 76.6 bits (187), Expect = 2.4e-11
Identity = 38/50 (76.00%), Postives = 42/50 (84.00%), Query Frame = 1 

Query: 34   HESVTLDAKIKALSKYFSTYCKLKGTTNSIDILGSVIDHLR-RESCAGLF 83
            HE VTLD KIKALSKYFSTYCKLKG T+S DILGSVIDHLR R+ C  ++
Sbjct: 1073 HEFVTLDGKIKALSKYFSTYCKLKGMTSSTDILGSVIDHLRKRKLCRSIY 1122

The following BLAST results are available for this feature:
BLAST of Csa1G033110 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVH7_CUCSA4.8e-43100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G033110 PE=4 SV=1[more]
A0A0A0K6D4_CUCSA3.9e-1380.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G031030 PE=4 SV=1[more]
A0A0A0K6D4_CUCSA8.2e-1156.16Uncharacterized protein OS=Cucumis sativus GN=Csa_7G031030 PE=4 SV=1[more]
BLAST of Csa1G033110 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208895|gb|KGN63991.1|6.9e-43100.00hypothetical protein Csa_1G033110 [Cucumis sativus][more]
gi|449453758|ref|XP_004144623.1|5.7e-1380.00PREDICTED: uncharacterized protein LOC101212645 isoform X1 [Cucumis sativus][more]
gi|449453758|ref|XP_004144623.1|1.2e-1056.16PREDICTED: uncharacterized protein LOC101212645 isoform X1 [Cucumis sativus][more]
gi|778723407|ref|XP_011658648.1|1.2e-1056.16PREDICTED: uncharacterized protein LOC101212645 isoform X2 [Cucumis sativus][more]
gi|659124180|ref|XP_008462023.1|5.0e-0964.29PREDICTED: dentin sialophosphoprotein isoform X2 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU132770cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G033110.1Csa1G033110.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU132770CU132770transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G033110Wax gourdcuwgoB069
Csa1G033110Wax gourdcuwgoB115
Csa1G033110Cucumber (Chinese Long) v2cucuB000
Csa1G033110Cucumber (Chinese Long) v2cucuB032
Csa1G033110Cucumber (Chinese Long) v2cucuB028
Csa1G033110Cucumber (Gy14) v1cgycuB227
Csa1G033110Cucumber (Gy14) v1cgycuB137
Csa1G033110Cucumber (Gy14) v1cgycuB300
Csa1G033110Cucumber (Gy14) v1cgycuB403
Csa1G033110Cucurbita maxima (Rimu)cmacuB054
Csa1G033110Cucurbita maxima (Rimu)cmacuB105
Csa1G033110Cucurbita maxima (Rimu)cmacuB206
Csa1G033110Cucurbita maxima (Rimu)cmacuB403
Csa1G033110Cucurbita maxima (Rimu)cmacuB428
Csa1G033110Cucurbita maxima (Rimu)cmacuB684
Csa1G033110Cucurbita moschata (Rifu)cmocuB043
Csa1G033110Cucurbita moschata (Rifu)cmocuB077
Csa1G033110Cucurbita moschata (Rifu)cmocuB191
Csa1G033110Cucurbita moschata (Rifu)cmocuB391
Csa1G033110Cucurbita moschata (Rifu)cmocuB417
Csa1G033110Cucurbita moschata (Rifu)cmocuB674
Csa1G033110Cucurbita moschata (Rifu)cmocuB675
Csa1G033110Melon (DHL92) v3.5.1cumeB006
Csa1G033110Melon (DHL92) v3.5.1cumeB008
Csa1G033110Melon (DHL92) v3.5.1cumeB027
Csa1G033110Melon (DHL92) v3.5.1cumeB056
Csa1G033110Watermelon (Charleston Gray)cuwcgB057
Csa1G033110Watermelon (Charleston Gray)cuwcgB061
Csa1G033110Watermelon (Charleston Gray)cuwcgB083
Csa1G033110Watermelon (97103) v1cuwmB038
Csa1G033110Watermelon (97103) v1cuwmB062
Csa1G033110Watermelon (97103) v1cuwmB096
Csa1G033110Cucurbita pepo (Zucchini)cpecuB026
Csa1G033110Cucurbita pepo (Zucchini)cpecuB366
Csa1G033110Cucurbita pepo (Zucchini)cpecuB379
Csa1G033110Cucurbita pepo (Zucchini)cpecuB380
Csa1G033110Cucurbita pepo (Zucchini)cpecuB517
Csa1G033110Cucurbita pepo (Zucchini)cpecuB533
Csa1G033110Cucurbita pepo (Zucchini)cpecuB655
Csa1G033110Bottle gourd (USVL1VR-Ls)culsiB022
Csa1G033110Bottle gourd (USVL1VR-Ls)culsiB053
Csa1G033110Bottle gourd (USVL1VR-Ls)culsiB072
Csa1G033110Cucumber (Gy14) v2cgybcuB001
Csa1G033110Cucumber (Gy14) v2cgybcuB004
Csa1G033110Cucumber (Gy14) v2cgybcuB197
Csa1G033110Cucumber (Gy14) v2cgybcuB201
Csa1G033110Melon (DHL92) v3.6.1cumedB022
Csa1G033110Melon (DHL92) v3.6.1cumedB001
Csa1G033110Melon (DHL92) v3.6.1cumedB003
Csa1G033110Melon (DHL92) v3.6.1cumedB048
Csa1G033110Silver-seed gourdcarcuB0106
Csa1G033110Silver-seed gourdcarcuB0052
Csa1G033110Silver-seed gourdcarcuB0417
Csa1G033110Silver-seed gourdcarcuB0639
Csa1G033110Watermelon (97103) v2cuwmbB054
Csa1G033110Watermelon (97103) v2cuwmbB059
Csa1G033110Watermelon (97103) v2cuwmbB080