Csa1G028030 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G028030
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 3075015 .. 3075506 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTGTTTGTAAACCCTTTCTCTCTCTTGCCACTTATTCCATCATGAAGGGGAATATTTGAGCTGTGAACTCCACTGGTGAAGATTTCTACAAAACGATTAAAGTGCCTAAGTTTGTCAACTTCACTGTTTCTGATCACTACATTCCCGATGATTGGTATTGGTTTCGCTCCCGAGTCGGGTGTAAAGAAACACATCCAGAAGAAATGGACCCTGATGTCATTTACAAAAACTTTGTTGTGTGGGTAATGGTGGCCAAAAGTCCAAATGTACGGCTTCAGAGAGTTAGAGGAACTTGTCCACTTACAACTCCTCCGAAGTTGTCGAAGTCCTAGTAGCTGCTAGCCCTGATTACTTCCATTTCCAAGCGGACAGTGAATTCAAGAGTTAAGTCTAGATCGCCTATTACCAAGCTTGCTACAACTACGAATGTAAAGCCAAAGCAAGCTCATGCCGAGGCAATGACCACTCCAAGGCACAGGAAGCTTAA

mRNA sequence

ATGGCCTCTGTGAACTCCACTGGTGAAGATTTCTACAAAACGATTAAAGTGCCTAAGTTTGTCAACTTCACTGTTTCTGATCACTACATTCCCGATGATTGGTATTGGTTTCGCTCCCGAGTCGGGTGTAAAGAAACACATCCAGAAGAAATGGACCCTGATGTCATTTACAAAAACTTTGTTGTGTGGAGGAACTTGTCCACTTACAACTCCTCCGAAGTTGTCGAAGTCCTAGTAGCTGCTAGCCCTGATTACTTCCATTTCCAAGCGGACAGTGAATTCAAGACCAAAGCAAGCTCATGCCGAGGCAATGACCACTCCAAGGCACAGGAAGCTTAA

Coding sequence (CDS)

ATGGCCTCTGTGAACTCCACTGGTGAAGATTTCTACAAAACGATTAAAGTGCCTAAGTTTGTCAACTTCACTGTTTCTGATCACTACATTCCCGATGATTGGTATTGGTTTCGCTCCCGAGTCGGGTGTAAAGAAACACATCCAGAAGAAATGGACCCTGATGTCATTTACAAAAACTTTGTTGTGTGGAGGAACTTGTCCACTTACAACTCCTCCGAAGTTGTCGAAGTCCTAGTAGCTGCTAGCCCTGATTACTTCCATTTCCAAGCGGACAGTGAATTCAAGACCAAAGCAAGCTCATGCCGAGGCAATGACCACTCCAAGGCACAGGAAGCTTAA

Protein sequence

MASVNSTGEDFYKTIKVPKFVNFTVSDHYIPDDWYWFRSRVGCKETHPEEMDPDVIYKNFVVWRNLSTYNSSEVVEVLVAASPDYFHFQADSEFKTKASSCRGNDHSKAQEA*
Homology
[Close]
BLAST of Csa1G028030 vs. TrEMBL
Match: A0A0A0LPU4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G028030 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 1.9e-60
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1 

Query: 1   MASVNSTGEDFYKTIKVPKFVNFTVSDHYIPDDWYWFRSRVGCKETHPEEMDPDVIYKNF 60
           MASVNSTGEDFYKTIKVPKFVNFTVSDHYIPDDWYWFRSRVGCKETHPEEMDPDVIYKNF
Sbjct: 1   MASVNSTGEDFYKTIKVPKFVNFTVSDHYIPDDWYWFRSRVGCKETHPEEMDPDVIYKNF 60

Query: 61  VVWRNLSTYNSSEVVEVLVAASPDYFHFQADSEFKTKASSCRGNDHSKAQEA 113
           VVWRNLSTYNSSEVVEVLVAASPDYFHFQADSEFKTKASSCRGNDHSKAQEA
Sbjct: 61  VVWRNLSTYNSSEVVEVLVAASPDYFHFQADSEFKTKASSCRGNDHSKAQEA 112

[Close]
BLAST of Csa1G028030 vs. TrEMBL
Match: A0A0A0K2C2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G069700 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.6e-19
Identity = 46/64 (71.88%), Postives = 54/64 (84.38%), Query Frame = 1 

Query: 3  SVNSTG----EDFYKTIKVPKFVNFTVSDHYIPDDWYWFRSRVGCKETHPEEMDPDVIYK 62
          +VNSTG    EDFY+ I+ PKFV+FTVSDHY+PDD YWF SRVGC+E HPEEMD DV+YK
Sbjct: 7  AVNSTGDDSGEDFYEMIEAPKFVDFTVSDHYVPDDRYWFCSRVGCEEAHPEEMDSDVVYK 66

[Close]
BLAST of Csa1G028030 vs. TrEMBL
Match: A0A0K9QV63_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_137620 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.9e-12
Identity = 33/54 (61.11%), Postives = 43/54 (79.63%), Query Frame = 1 

Query: 9  EDFYKTIKVPKFVNFTVSDHYIPDDWYWFRSRVGCKETHPEEMDPDVIYKNFVV 63
          E+FY+ I+ PKFV+FTV +H+ PDD +WF SRVGC + H EEMD + IYKNFV+
Sbjct: 13 EEFYEKIEAPKFVDFTVPNHFCPDDRFWFCSRVGCDQRHEEEMDSEAIYKNFVL 66

[Close]
BLAST of Csa1G028030 vs. TrEMBL
Match: A0A0J8BHS4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g222430 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.2e-12
Identity = 32/54 (59.26%), Postives = 42/54 (77.78%), Query Frame = 1 

Query: 9  EDFYKTIKVPKFVNFTVSDHYIPDDWYWFRSRVGCKETHPEEMDPDVIYKNFVV 63
          E+FY+ I+ PKFV+FT+ +H+ PDD YWF SRVGC + H EEMD + IY NFV+
Sbjct: 18 EEFYEKIEAPKFVDFTLPNHFCPDDCYWFCSRVGCDQQHEEEMDSEAIYNNFVL 71

[Close]
BLAST of Csa1G028030 vs. TrEMBL
Match: V4SAR2_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10030341mg PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-11
Identity = 35/57 (61.40%), Postives = 42/57 (73.68%), Query Frame = 1 

Query: 8  GEDFYKTIKVPKFVNFTVSDHYIPD--DWYWFRSRVGCKETHPEEMDPDVIYKNFVV 63
          G+DFY+ I+ PKFV+ T  DHY PD  D YWF  RVGC + H EEMD +VIYKNFV+
Sbjct: 9  GDDFYEKIEAPKFVDLTAPDHYRPDNDDRYWFCLRVGCDQKHEEEMDSEVIYKNFVL 65

[Close]
BLAST of Csa1G028030 vs. TAIR10
Match: AT4G17000.1 (AT4G17000.1 unknown protein)

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-11
Identity = 31/55 (56.36%), Postives = 36/55 (65.45%), Query Frame = 1 

Query: 9  EDFYKTIKVPKFVNFTVSDHYIP-DDWYWFRSRVGCKETHPEEMDPDVIYKNFVV 63
          EDFY+TI+ PKFV+ T  DH    DD YWF SRVGC + H E +D + IYK FV+
Sbjct: 15 EDFYETIEAPKFVDLTAPDHRPEGDDRYWFCSRVGCDQKHEEFLDSEAIYKKFVL 69

[Close]
BLAST of Csa1G028030 vs. NCBI nr
Match: gi|700208829|gb|KGN63925.1| (hypothetical protein Csa_1G028030 [Cucumis sativus])

HSP 1 Score: 239.6 bits (610), Expect = 2.7e-60
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1 

Query: 1   MASVNSTGEDFYKTIKVPKFVNFTVSDHYIPDDWYWFRSRVGCKETHPEEMDPDVIYKNF 60
           MASVNSTGEDFYKTIKVPKFVNFTVSDHYIPDDWYWFRSRVGCKETHPEEMDPDVIYKNF
Sbjct: 1   MASVNSTGEDFYKTIKVPKFVNFTVSDHYIPDDWYWFRSRVGCKETHPEEMDPDVIYKNF 60

Query: 61  VVWRNLSTYNSSEVVEVLVAASPDYFHFQADSEFKTKASSCRGNDHSKAQEA 113
           VVWRNLSTYNSSEVVEVLVAASPDYFHFQADSEFKTKASSCRGNDHSKAQEA
Sbjct: 61  VVWRNLSTYNSSEVVEVLVAASPDYFHFQADSEFKTKASSCRGNDHSKAQEA 112

[Close]
BLAST of Csa1G028030 vs. NCBI nr
Match: gi|778724727|ref|XP_011658858.1| (PREDICTED: uncharacterized protein LOC101210501 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 5.1e-19
Identity = 46/64 (71.88%), Postives = 54/64 (84.38%), Query Frame = 1 

Query: 3  SVNSTG----EDFYKTIKVPKFVNFTVSDHYIPDDWYWFRSRVGCKETHPEEMDPDVIYK 62
          +VNSTG    EDFY+ I+ PKFV+FTVSDHY+PDD YWF SRVGC+E HPEEMD DV+YK
Sbjct: 7  AVNSTGDDSGEDFYEMIEAPKFVDFTVSDHYVPDDRYWFCSRVGCEEAHPEEMDSDVVYK 66

[Close]
BLAST of Csa1G028030 vs. NCBI nr
Match: gi|659110151|ref|XP_008455076.1| (PREDICTED: cylicin-1 [Cucumis melo])

HSP 1 Score: 98.6 bits (244), Expect = 7.4e-18
Identity = 45/64 (70.31%), Postives = 53/64 (82.81%), Query Frame = 1 

Query: 3  SVNST----GEDFYKTIKVPKFVNFTVSDHYIPDDWYWFRSRVGCKETHPEEMDPDVIYK 62
          +VNST    GEDFY+ I+ PKFV+FTVSD Y+PDD YWF SRVGC+E HPEEMD DV+YK
Sbjct: 7  AVNSTSDDSGEDFYELIEAPKFVDFTVSDPYVPDDRYWFCSRVGCEEVHPEEMDSDVVYK 66

[Close]
BLAST of Csa1G028030 vs. NCBI nr
Match: gi|747081483|ref|XP_011088016.1| (PREDICTED: uncharacterized protein LOC105169333 [Sesamum indicum])

HSP 1 Score: 80.9 bits (198), Expect = 1.6e-12
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 1 

Query: 9  EDFYKTIKVPKFVNFTVSDHYIPDDWYWFRSRVGCKETHPEEMDPDVIYKNFVV 63
          E+FY+ I+ PKFV+FTV DH+ PDD YWF  RVGC + H EEMD + IYKNFV+
Sbjct: 35 EEFYEKIEAPKFVDFTVPDHFRPDDRYWFCHRVGCDQKHEEEMDSEAIYKNFVL 88

[Close]
BLAST of Csa1G028030 vs. NCBI nr
Match: gi|902188398|gb|KNA11135.1| (hypothetical protein SOVF_137620 [Spinacia oleracea])

HSP 1 Score: 80.1 bits (196), Expect = 2.7e-12
Identity = 33/54 (61.11%), Postives = 43/54 (79.63%), Query Frame = 1 

Query: 9  EDFYKTIKVPKFVNFTVSDHYIPDDWYWFRSRVGCKETHPEEMDPDVIYKNFVV 63
          E+FY+ I+ PKFV+FTV +H+ PDD +WF SRVGC + H EEMD + IYKNFV+
Sbjct: 13 EEFYEKIEAPKFVDFTVPNHFCPDDRFWFCSRVGCDQRHEEEMDSEAIYKNFVL 66

The following BLAST results are available for this feature:
BLAST of Csa1G028030 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPU4_CUCSA1.9e-60100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G028030 PE=4 SV=1[more]
A0A0A0K2C2_CUCSA3.6e-1971.88Uncharacterized protein OS=Cucumis sativus GN=Csa_7G069700 PE=4 SV=1[more]
A0A0K9QV63_SPIOL1.9e-1261.11Uncharacterized protein OS=Spinacia oleracea GN=SOVF_137620 PE=4 SV=1[more]
A0A0J8BHS4_BETVU4.2e-1259.26Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g222430 PE=4 S... [more]
V4SAR2_9ROSI1.2e-1161.40Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10030341mg PE=... [more]
BLAST of Csa1G028030 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G17000.11.1e-1156.36 unknown protein[more]
BLAST of Csa1G028030 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208829|gb|KGN63925.1|2.7e-60100.00hypothetical protein Csa_1G028030 [Cucumis sativus][more]
gi|778724727|ref|XP_011658858.1|5.1e-1971.88PREDICTED: uncharacterized protein LOC101210501 [Cucumis sativus][more]
gi|659110151|ref|XP_008455076.1|7.4e-1870.31PREDICTED: cylicin-1 [Cucumis melo][more]
gi|747081483|ref|XP_011088016.1|1.6e-1262.96PREDICTED: uncharacterized protein LOC105169333 [Sesamum indicum][more]
gi|902188398|gb|KNA11135.1|2.7e-1261.11hypothetical protein SOVF_137620 [Spinacia oleracea][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G028030.1Csa1G028030.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37241FAMILY NOT NAMEDcoord: 9..62
score: 1.8
NoneNo IPR availablePANTHERPTHR37241:SF1SUBFAMILY NOT NAMEDcoord: 9..62
score: 1.8

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G028030Bottle gourd (USVL1VR-Ls)culsiB039
Csa1G028030Cucumber (Gy14) v2cgybcuB001
Csa1G028030Silver-seed gourdcarcuB0549
Csa1G028030Watermelon (97103) v2cuwmbB049
Csa1G028030Cucumber (Gy14) v1cgycuB137
Csa1G028030Cucurbita maxima (Rimu)cmacuB428
Csa1G028030Cucurbita moschata (Rifu)cmocuB417
Csa1G028030Watermelon (97103) v1cuwmB026
Csa1G028030Cucurbita pepo (Zucchini)cpecuB533