Csa1G025220 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G025220
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionProtein binding protein, putative
LocationChr1 : 2806912 .. 2808947 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTCCATACTTTTCCCTTGATTCATGTTGCTTGATTGCTGACATACTTGAGATGGTAACTTCTCGTTCTTGATTATGCCTGTTTTATATTGAAAATATATCAACTCTGTTTTGCTGATTAGACATGCCTTGAGATACTTGGAGCAGTGGTATCTTTCTTTCCTGAGCTATGAGTGATATTAATCTGTATTGTGGCATTTTAGGCAAATTGTACTTGTCTTGCTGAGCTCATTCTTTTTGTGCTTTCTTGATCCTTAACTACCTATAGAATGGAAATGGAAAAACAATTATTATAAATATTAGTGTTACGGAGGATCTAGGACGTGTTTGGGTTGATTTTGTAAGTGTCAGAAAAAAATGTGTGAAAGGTAAAAACATGTGTTTTAAGCATTTAGATAGTCGTTCCAAACAGACTCATAGTATGTCATGGCATGAGTCTTAGGATGCACAAATTTGGGAAAAGAGACTTCATAGCTGGGATGTGGCTAGAACTAAAATTGAGTGAGAAGCAGACATCTACTTGTAATTAGAATCCGGTCTTTGTCCATTTCTCCACACTTTAGATGGAATTAGGTTATCAAGCTCACGTTTTGTATGATTTTTTTGTTCAGTCCAATGGGTTGACATGATGATTATGATCATAGAGGTTTAAGTTTAGGATTGTTATTCCCACAACCATGTTAATTTCAGGAAACAAATTTTTTATGAGACGTAGGCAGAAGTGGGCTCCTTATCTTTATCCTATGACAACCAAACTGTTCTCGTATTAATGAGATTAATCTATAAGTTAAGTCTTTGACCTTTTAGCTTTATGTCTATTTGGTATACGGACTTGAAAAAGTATCTTAGAGATCCTTGAACTTTCAATGTCTTCAACAGGGTTTTAAACTTCAAAAAAAGATATAGGTATTTGAACTTCTAATTTGTGTTTTTGATTTCCAACTTTGCGTTTAATTGGTCCTTGACTTATACAACACTTATTTCTTTTTAAATTCTCACACATACTAAACACAAAATTGAAAGATTGGGATCTCACCCGTCATAAAATTCAATTTTGTAGAACCAGATATTTTTTTACAACTTTTGAATAAGGACTTAAAAATAAAAGTTGAAGGACCCATTAAACTTCCTTCAGATTTAGGGACCTATTAGATACAAAATCGAAAATTGAGGGTTCCATTAGTCAAATTTTGAAGTTTAAGGACTAAATAGACACAATTTTTGAAAGCTGAGGGATTAAACTTGTAATTTAACTCAAAAGTAAACGAGAAATGTGCTCTTGTACATTCTTCAAGTCAGTTAAAAGAAGTAAAGGAAAATCATTACCGTCTTTATTTATTTATTTTTTGGAGGAATTTAGCCATCTTTCTTAATGCTCGTGTATGATGTTATTGAATACAAACCTTGTTGATAGGTTGTTGAAGTGAAGGGGGCGTTGTGCTTGACCTTATCTTTAGAACTTGCATCATCCGTGTTCTCCTTGATCTCCAAATCTGACAAGAAGGTTACCACTATCCAGAAGAAGGAGATTTCATCGCCTTGTTCTTTGAAATGGAAGTTAAAATGGTTCTGTAAAGAGAATCTACTTAATTTCATTGCACTAGCGAAGGCAATGCACCAGGAAAGCAAGGGGTCTTCCTTGCCTGTAAGATATGTATCGTGATTGTGGAGGTTGCAGAAAAAGGTACATAGGCAATGGTTCTTCAAATTTTTAAGTTCTGATTCAATTCATTCTTTTATTGGCTCTTGTGTGTTGAGTGCATTTTTTTTTTAGTTTATGATCTTTGGATTACTTAATATTCTACCGTGTACATATTGTGTACAGTGTATAACAGTTAACTAGGAAATTGAAATTCTTTATTTCCTTTATTTCCAGTGTGTTCTTCTTTTCTTAATAGATAGATGCTAGGATTGGAAGATGAAGATCAATTTAATGTCTTATAGAACTGTGAATTTTTAGAAAATGAAGAATAAGTCGATGGATATGTCAGACACAAGTTTTGTAATGTTGCCCGTCGTCCATCAAGCTGATGGCCC

mRNA sequence

ATGGTTGTTGAAGTGAAGGGGGCGTTGTGCTTGACCTTATCTTTAGAACTTGCATCATCCGTGTTCTCCTTGATCTCCAAATCTGACAAGAAGGTTACCACTATCCAGAAGAAGGAGATTTCATCGCCTTGTTCTTTGAAATGGAAGTTAAAATGGTTCTGTAAAGAGAATCTACTTAATTTCATTGCACTAGCGAAGGCAATGCACCAGGAAAGCAAGGGGTCTTCCTTGCCTGTAAGATATGTATCGTGA

Coding sequence (CDS)

ATGGTTGTTGAAGTGAAGGGGGCGTTGTGCTTGACCTTATCTTTAGAACTTGCATCATCCGTGTTCTCCTTGATCTCCAAATCTGACAAGAAGGTTACCACTATCCAGAAGAAGGAGATTTCATCGCCTTGTTCTTTGAAATGGAAGTTAAAATGGTTCTGTAAAGAGAATCTACTTAATTTCATTGCACTAGCGAAGGCAATGCACCAGGAAAGCAAGGGGTCTTCCTTGCCTGTAAGATATGTATCGTGA

Protein sequence

MVVEVKGALCLTLSLELASSVFSLISKSDKKVTTIQKKEISSPCSLKWKLKWFCKENLLNFIALAKAMHQESKGSSLPVRYVS*
Homology
[Close]
BLAST of Csa1G025220 vs. TrEMBL
Match: A0A0A0LSB2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025220 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 5.7e-38
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1 

Query: 1  MVVEVKGALCLTLSLELASSVFSLISKSDKKVTTIQKKEISSPCSLKWKLKWFCKENLLN 60
          MVVEVKGALCLTLSLELASSVFSLISKSDKKVTTIQKKEISSPCSLKWKLKWFCKENLLN
Sbjct: 1  MVVEVKGALCLTLSLELASSVFSLISKSDKKVTTIQKKEISSPCSLKWKLKWFCKENLLN 60

Query: 61 FIALAKAMHQESKGSSLPVRYVS 84
          FIALAKAMHQESKGSSLPVRYVS
Sbjct: 61 FIALAKAMHQESKGSSLPVRYVS 83

[Close]
BLAST of Csa1G025220 vs. TrEMBL
Match: F6GSN5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g02180 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.1e-08
Identity = 35/83 (42.17%), Postives = 54/83 (65.06%), Query Frame = 1 

Query: 1   MVVEVKGALCLTLSLELASSVFSLISKSDKKVTTIQKKEISSPCSLKWKLKWFCKENLLN 60
           MV+E + + C+TL+L  A+S     + +DK+   + K++ +S  SL WKLKWF +E+L  
Sbjct: 804 MVIEARESQCVTLALVRATSELCPSTNTDKEQVGLDKEKTASG-SLTWKLKWFSEESLFK 863

Query: 61  FIALAKAMHQESKGSSLPVRYVS 84
           F+AL KA+H  +  S LPVR +S
Sbjct: 864 FVALFKAIHAGATMSPLPVRCIS 885

[Close]
BLAST of Csa1G025220 vs. TrEMBL
Match: B9I2D0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s04260g PE=4 SV=2)

HSP 1 Score: 65.1 bits (157), Expect = 4.7e-08
Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = 1 

Query: 1    MVVEVKGALCLTLSLELASSVFSLISKSDKKVTTIQKKEISSPCSLKWKLKWFCKENLLN 60
            +V+E K +  +TL+L+ A+  F L S S K V T      +S  SL WKLKWF KE+LLN
Sbjct: 1062 LVIEAKESWFVTLALQNATKSFCLSSISQKDVKTTSNDNAAS-VSLTWKLKWFSKESLLN 1121

Query: 61   FIALAKAMHQESKGSSLPV 80
            F+AL KA+H  +  ++ P+
Sbjct: 1122 FVALLKAIHAAAGAATAPL 1139

[Close]
BLAST of Csa1G025220 vs. TrEMBL
Match: A0A0V0IXP9_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 8.0e-08
Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 1 

Query: 1    MVVEVKGALCLTLSLELASSVFSLISKSDKKVTT---IQKKEISSPCSLKWKLKWFCKEN 60
            +V+E     C+TL+LE   S F L  K  K V     +++K +S P  LKWKLKWF +E+
Sbjct: 1020 VVIETTDCYCVTLTLEGVMSEFPLSLKEGKVVKNTKLMKRKPVSGP--LKWKLKWFSEES 1079

Query: 61   LLNFIALAKAMHQESKGSSLPV 80
            L  F+AL KA+H E+  S+L V
Sbjct: 1080 LFKFVALLKALHSEATPSALLV 1099

[Close]
BLAST of Csa1G025220 vs. TrEMBL
Match: M1A4B3_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400005676 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.3e-07
Identity = 35/82 (42.68%), Postives = 49/82 (59.76%), Query Frame = 1 

Query: 1    MVVEVKGALCLTLSLELASSVFSLISKSDKKVTT---IQKKEISSPCSLKWKLKWFCKEN 60
            +V+E     C+TL+LE   S F L  K  K V     +++K +S P  LKWKLKWF +E+
Sbjct: 1015 VVIETTDCYCVTLTLEGVMSEFPLSLKEGKVVKNTKLMKRKPVSGP--LKWKLKWFSEES 1074

Query: 61   LLNFIALAKAMHQESKGSSLPV 80
               F+AL KA+H E+  S+L V
Sbjct: 1075 FFKFVALLKALHSEATTSALLV 1094

[Close]
BLAST of Csa1G025220 vs. NCBI nr
Match: gi|700208793|gb|KGN63889.1| (hypothetical protein Csa_1G025220 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 8.2e-38
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1 

Query: 1  MVVEVKGALCLTLSLELASSVFSLISKSDKKVTTIQKKEISSPCSLKWKLKWFCKENLLN 60
          MVVEVKGALCLTLSLELASSVFSLISKSDKKVTTIQKKEISSPCSLKWKLKWFCKENLLN
Sbjct: 1  MVVEVKGALCLTLSLELASSVFSLISKSDKKVTTIQKKEISSPCSLKWKLKWFCKENLLN 60

Query: 61 FIALAKAMHQESKGSSLPVRYVS 84
          FIALAKAMHQESKGSSLPVRYVS
Sbjct: 61 FIALAKAMHQESKGSSLPVRYVS 83

[Close]
BLAST of Csa1G025220 vs. NCBI nr
Match: gi|449439162|ref|XP_004137356.1| (PREDICTED: uncharacterized protein LOC101203626 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 8.2e-38
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1 

Query: 1    MVVEVKGALCLTLSLELASSVFSLISKSDKKVTTIQKKEISSPCSLKWKLKWFCKENLLN 60
            MVVEVKGALCLTLSLELASSVFSLISKSDKKVTTIQKKEISSPCSLKWKLKWFCKENLLN
Sbjct: 1008 MVVEVKGALCLTLSLELASSVFSLISKSDKKVTTIQKKEISSPCSLKWKLKWFCKENLLN 1067

Query: 61   FIALAKAMHQESKGSSLPVRYVS 84
            FIALAKAMHQESKGSSLPVRYVS
Sbjct: 1068 FIALAKAMHQESKGSSLPVRYVS 1090

[Close]
BLAST of Csa1G025220 vs. NCBI nr
Match: gi|659107034|ref|XP_008453502.1| (PREDICTED: uncharacterized protein LOC103494195 isoform X2 [Cucumis melo])

HSP 1 Score: 150.2 bits (378), Expect = 1.6e-33
Identity = 76/83 (91.57%), Postives = 78/83 (93.98%), Query Frame = 1 

Query: 1    MVVEVKGALCLTLSLELASSVFSLISKSDKKVTTIQKKEISSPCSLKWKLKWFCKENLLN 60
            MVVEVKG  CLTLSL+ ASSVFSLISKSD+KVTTIQKKEISSPCSLKWKLKWFCK NLLN
Sbjct: 1005 MVVEVKGVFCLTLSLKHASSVFSLISKSDEKVTTIQKKEISSPCSLKWKLKWFCKGNLLN 1064

Query: 61   FIALAKAMHQESKGSSLPVRYVS 84
            FIALAKAMH ESKGSSLPVRYVS
Sbjct: 1065 FIALAKAMHLESKGSSLPVRYVS 1087

[Close]
BLAST of Csa1G025220 vs. NCBI nr
Match: gi|659107030|ref|XP_008453501.1| (PREDICTED: uncharacterized protein LOC103494195 isoform X1 [Cucumis melo])

HSP 1 Score: 150.2 bits (378), Expect = 1.6e-33
Identity = 76/83 (91.57%), Postives = 78/83 (93.98%), Query Frame = 1 

Query: 1    MVVEVKGALCLTLSLELASSVFSLISKSDKKVTTIQKKEISSPCSLKWKLKWFCKENLLN 60
            MVVEVKG  CLTLSL+ ASSVFSLISKSD+KVTTIQKKEISSPCSLKWKLKWFCK NLLN
Sbjct: 1006 MVVEVKGVFCLTLSLKHASSVFSLISKSDEKVTTIQKKEISSPCSLKWKLKWFCKGNLLN 1065

Query: 61   FIALAKAMHQESKGSSLPVRYVS 84
            FIALAKAMH ESKGSSLPVRYVS
Sbjct: 1066 FIALAKAMHLESKGSSLPVRYVS 1088

[Close]
BLAST of Csa1G025220 vs. NCBI nr
Match: gi|1009131217|ref|XP_015882720.1| (PREDICTED: uncharacterized protein LOC107418533 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 72.0 bits (175), Expect = 5.5e-10
Identity = 40/83 (48.19%), Postives = 52/83 (62.65%), Query Frame = 1 

Query: 1    MVVEVKGALCLTLSLELASSVFSLISKSDKKVTTIQKKEISSPCSLKWKLKWFCKENLLN 60
            MVVE K + C+TL LE A+SVF+  +K  K +    KK  SS  SL WKLKWF +E+L  
Sbjct: 1049 MVVEAKESCCVTLQLECATSVFNPSAKFGKGLKGFDKKTASS--SLAWKLKWFSEESLFK 1108

Query: 61   FIALAKAMHQESKGSSLPVRYVS 84
            F+AL KA+H  +  S L +R  S
Sbjct: 1109 FVALVKAIHSGTSTSPLLIRCTS 1129

The following BLAST results are available for this feature:
BLAST of Csa1G025220 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSB2_CUCSA5.7e-38100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025220 PE=4 SV=1[more]
F6GSN5_VITVI2.1e-0842.17Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g02180 PE=4 SV=... [more]
B9I2D0_POPTR4.7e-0844.30Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s04260g PE=4 SV=2[more]
A0A0V0IXP9_SOLCH8.0e-0843.90Putative ovule protein OS=Solanum chacoense PE=4 SV=1[more]
M1A4B3_SOLTU2.3e-0742.68Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400005676 PE=4 SV=1[more]
BLAST of Csa1G025220 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208793|gb|KGN63889.1|8.2e-38100.00hypothetical protein Csa_1G025220 [Cucumis sativus][more]
gi|449439162|ref|XP_004137356.1|8.2e-38100.00PREDICTED: uncharacterized protein LOC101203626 [Cucumis sativus][more]
gi|659107034|ref|XP_008453502.1|1.6e-3391.57PREDICTED: uncharacterized protein LOC103494195 isoform X2 [Cucumis melo][more]
gi|659107030|ref|XP_008453501.1|1.6e-3391.57PREDICTED: uncharacterized protein LOC103494195 isoform X1 [Cucumis melo][more]
gi|1009131217|ref|XP_015882720.1|5.5e-1048.19PREDICTED: uncharacterized protein LOC107418533 isoform X1 [Ziziphus jujuba][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU147025cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G025220.1Csa1G025220.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU147025CU147025transcribed_cluster