Csa1G024970 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G024970
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionDNA binding protein, putative; contains IPR005175 (Domain of unknown function DUF296)
LocationChr1 : 2631219 .. 2631677 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGGAGGTGATCAAGCAGATATGGCAGTTCACTCTCTTGGATCTAAACTTTCTTTAATTTCAGATCATGAACCTGAAAAATGTGGCAATAATAATGTCACCAATAATCACCAACAAAGACCTTGCTTTGATCCTTCTCTTGTTTCTCCTAAGGTCGTACCACCTATCTCGGTGGCTGCAGAGAGTGATCAAGCTCTTCGTCGGCCTCGAGGGCGACCTGCTGGGTCCAAAAACAAGCCTAAACCACCCATTATTGTTACCCGAGATAGCGCTAATGCACTACGAGCTCATGCCATTGAGGTTAGCACTGGGTGTGATGTCAACGAGAGCCTCTCCAACTTCGCTCGGAGGAAGCAGCGTGGCGTCTGCATTCTTAGCGGTAGCGGGTGTGTCACTAATGTTACGCTTCGCCAAGCTGCTTCCTCTGGTGCCATTGTCACTCTGCATGGCCGGTAA

mRNA sequence

ATGGCTGGAGGTGATCAAGCAGATATGGCAGTTCACTCTCTTGGATCTAAACTTTCTTTAATTTCAGATCATGAACCTGAAAAATGTGGCAATAATAATGTCACCAATAATCACCAACAAAGACCTTGCTTTGATCCTTCTCTTGTTTCTCCTAAGGTCGTACCACCTATCTCGGTGGCTGCAGAGAGTGATCAAGCTCTTCGTCGGCCTCGAGGGCGACCTGCTGGGTCCAAAAACAAGCCTAAACCACCCATTATTGTTACCCGAGATAGCGCTAATGCACTACGAGCTCATGCCATTGAGGTTAGCACTGGGTGTGATGTCAACGAGAGCCTCTCCAACTTCGCTCGGAGGAAGCAGCGTGGCGTCTGCATTCTTAGCGGTAGCGGGTGTGTCACTAATGTTACGCTTCGCCAAGCTGCTTCCTCTGGTGCCATTGTCACTCTGCATGGCCGGTAA

Coding sequence (CDS)

ATGGCTGGAGGTGATCAAGCAGATATGGCAGTTCACTCTCTTGGATCTAAACTTTCTTTAATTTCAGATCATGAACCTGAAAAATGTGGCAATAATAATGTCACCAATAATCACCAACAAAGACCTTGCTTTGATCCTTCTCTTGTTTCTCCTAAGGTCGTACCACCTATCTCGGTGGCTGCAGAGAGTGATCAAGCTCTTCGTCGGCCTCGAGGGCGACCTGCTGGGTCCAAAAACAAGCCTAAACCACCCATTATTGTTACCCGAGATAGCGCTAATGCACTACGAGCTCATGCCATTGAGGTTAGCACTGGGTGTGATGTCAACGAGAGCCTCTCCAACTTCGCTCGGAGGAAGCAGCGTGGCGTCTGCATTCTTAGCGGTAGCGGGTGTGTCACTAATGTTACGCTTCGCCAAGCTGCTTCCTCTGGTGCCATTGTCACTCTGCATGGCCGGTAA

Protein sequence

MAGGDQADMAVHSLGSKLSLISDHEPEKCGNNNVTNNHQQRPCFDPSLVSPKVVPPISVAAESDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSTGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR*
Homology
[Close]
BLAST of Csa1G024970 vs. Swiss-Prot
Match: AHL16_ARATH (AT-hook motif nuclear-localized protein 16 OS=Arabidopsis thaliana GN=AHL16 PE=1 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 7.9e-39
Identity = 91/152 (59.87%), Postives = 110/152 (72.37%), Query Frame = 1 

Query: 1   MAGGDQADMAVHSLGSKLSLISDHEPEKCGNNNVTNNHQQRPCFDPSLVSPKVVPPISVA 60
           MAGG    +   S+GSK   + +HE  + GN   TNN+ +          PK V P+S +
Sbjct: 1   MAGGTA--LTPTSVGSKSVPMRNHEATERGN---TNNNLR--------ALPKAVQPVS-S 60

Query: 61  AESDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSTGCDVNESLSNFARRKQ 120
            E + A +RPRGRPAGSKNKPKPPIIVT DS N+LRA+A+E+S+GCD+ E+LS+FARRKQ
Sbjct: 61  IEGEMA-KRPRGRPAGSKNKPKPPIIVTHDSPNSLRANAVEISSGCDICETLSDFARRKQ 120

Query: 121 RGVCILSGSGCVTNVTLRQAASSGAIVTLHGR 153
           RG+CILS +GCVTNVTLRQ ASSGAIVTLHGR
Sbjct: 121 RGLCILSANGCVTNVTLRQPASSGAIVTLHGR 137

[Close]
BLAST of Csa1G024970 vs. Swiss-Prot
Match: AHL21_ARATH (AT-hook motif nuclear-localized protein 21 OS=Arabidopsis thaliana GN=AHL21 PE=2 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 7.9e-31
Identity = 60/88 (68.18%), Postives = 74/88 (84.09%), Query Frame = 1 

Query: 64  DQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSTGCDVNESLSNFARRKQRGV 123
           D  +RRPRGRPAGSKNKPKPP+IVTR+SAN LRAH +EV +GCDV E +S +ARR+QRG+
Sbjct: 74  DLVMRRPRGRPAGSKNKPKPPVIVTRESANTLRAHILEVGSGCDVFECISTYARRRQRGI 133

Query: 124 CILSGSGCVTNVTLRQAASSGAIVTLHG 152
           C+LSG+G VTNV++RQ  ++GA+VTL G
Sbjct: 134 CVLSGTGTVTNVSIRQPTAAGAVVTLRG 161

[Close]
BLAST of Csa1G024970 vs. Swiss-Prot
Match: AHL24_ARATH (AT-hook motif nuclear-localized protein 24 OS=Arabidopsis thaliana GN=AHL24 PE=2 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 5.1e-30
Identity = 62/91 (68.13%), Postives = 74/91 (81.32%), Query Frame = 1 

Query: 65  QALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSTGCDVNESLSNFARRKQRGVC 124
           Q  RRPRGRPAGSKNKPKPPII+TRDSANALR H +E+  GCD+ ES++ FARR+QRGVC
Sbjct: 102 QMTRRPRGRPAGSKNKPKPPIIITRDSANALRTHVMEIGDGCDLVESVATFARRRQRGVC 161

Query: 125 ILSGSGCVTNVTLRQAA---SSGAIVTLHGR 153
           ++SG+G VTNVT+RQ     S G++V+LHGR
Sbjct: 162 VMSGTGNVTNVTIRQPGSHPSPGSVVSLHGR 192

[Close]
BLAST of Csa1G024970 vs. Swiss-Prot
Match: AHL22_ARATH (AT-hook motif nuclear-localized protein 22 OS=Arabidopsis thaliana GN=AHL22 PE=1 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 5.1e-30
Identity = 62/89 (69.66%), Postives = 74/89 (83.15%), Query Frame = 1 

Query: 68  RRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSTGCDVNESLSNFARRKQRGVCILS 127
           RRPRGRPAGSKNKPKPPII+TRDSANAL++H +EV+ GCDV ES++ FARR+QRG+C+LS
Sbjct: 89  RRPRGRPAGSKNKPKPPIIITRDSANALKSHVMEVANGCDVMESVTVFARRRQRGICVLS 148

Query: 128 GSGCVTNVTLRQAAS----SGAIVTLHGR 153
           G+G VTNVT+RQ AS      ++V LHGR
Sbjct: 149 GNGAVTNVTIRQPASVPGGGSSVVNLHGR 177

[Close]
BLAST of Csa1G024970 vs. Swiss-Prot
Match: AHL26_ARATH (AT-hook motif nuclear-localized protein 26 OS=Arabidopsis thaliana GN=AHL26 PE=2 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.3e-29
Identity = 59/90 (65.56%), Postives = 73/90 (81.11%), Query Frame = 1 

Query: 64  DQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSTGCDVNESLSNFARRKQRGV 123
           +Q  RRPRGRPAGSKNKPK PII+TRDSANALR H +E+  GCD+ + ++ FARR+QRGV
Sbjct: 114 EQMTRRPRGRPAGSKNKPKAPIIITRDSANALRTHVMEIGDGCDIVDCMATFARRRQRGV 173

Query: 124 CILSGSGCVTNVTLRQAAS-SGAIVTLHGR 153
           C++SG+G VTNVT+RQ  S  G++V+LHGR
Sbjct: 174 CVMSGTGSVTNVTIRQPGSPPGSVVSLHGR 203

[Close]
BLAST of Csa1G024970 vs. TrEMBL
Match: A0A0A0LPP3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G024970 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 9.9e-81
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1 

Query: 1   MAGGDQADMAVHSLGSKLSLISDHEPEKCGNNNVTNNHQQRPCFDPSLVSPKVVPPISVA 60
           MAGGDQADMAVHSLGSKLSLISDHEPEKCGNNNVTNNHQQRPCFDPSLVSPKVVPPISVA
Sbjct: 1   MAGGDQADMAVHSLGSKLSLISDHEPEKCGNNNVTNNHQQRPCFDPSLVSPKVVPPISVA 60

Query: 61  AESDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSTGCDVNESLSNFARRKQ 120
           AESDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSTGCDVNESLSNFARRKQ
Sbjct: 61  AESDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSTGCDVNESLSNFARRKQ 120

Query: 121 RGVCILSGSGCVTNVTLRQAASSGAIVTLHGR 153
           RGVCILSGSGCVTNVTLRQAASSGAIVTLHGR
Sbjct: 121 RGVCILSGSGCVTNVTLRQAASSGAIVTLHGR 152

[Close]
BLAST of Csa1G024970 vs. TrEMBL
Match: B9SM86_RICCO (DNA binding protein, putative OS=Ricinus communis GN=RCOM_0297020 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 6.1e-46
Identity = 105/155 (67.74%), Postives = 124/155 (80.00%), Query Frame = 1 

Query: 1   MAGGDQADMAVHSLGSKLSLISDHEPEKCGNNNVTNNHQQRPCFDPSLVSPKV---VPPI 60
           MAGG  AD+AV  +GSK  + S+ EP + GN        +RP  +  L+SPK+   VPP+
Sbjct: 1   MAGG--ADLAVPPIGSKNIMESNQEPNR-GN-------YRRPGIEAILMSPKLPKSVPPV 60

Query: 61  SVAAESDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSTGCDVNESLSNFAR 120
           S A E +  +RRPRGRPAGSKNKPKPPIIVTRDSANALRAHA+EVS+GCDV+ESL+NFAR
Sbjct: 61  SSAVEGE-TIRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAMEVSSGCDVSESLANFAR 120

Query: 121 RKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR 153
           R+QRG+C+LSGSGCVTNVTLRQ ASSGAIVTLHGR
Sbjct: 121 RRQRGICVLSGSGCVTNVTLRQPASSGAIVTLHGR 144

[Close]
BLAST of Csa1G024970 vs. TrEMBL
Match: V4TKT7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032444mg PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.1e-44
Identity = 102/153 (66.67%), Postives = 120/153 (78.43%), Query Frame = 1 

Query: 1   MAGGDQADMAVHSLGSKLSLISDHEPEKCGNNNVTNNHQQRPCFDPSLVSPKVVPPIS-V 60
           MAGG   D+ VHS+ +K ++  + E +K        NHQ RP  D  L+ PKV   +S V
Sbjct: 1   MAGG--TDLNVHSVATKAAVDRNQELDK-------GNHQ-RPGTDAMLMPPKVAKAVSPV 60

Query: 61  AAESDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSTGCDVNESLSNFARRK 120
           +A   + LRRPRGRPAGSKNKPKPPIIVTRDSANALRAHA+EVS+GCDV+ESL+NFARRK
Sbjct: 61  SAADGETLRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAMEVSSGCDVSESLANFARRK 120

Query: 121 QRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR 153
           QRG+CILSGSGCVTNVTLRQ A+SG+IVTLHGR
Sbjct: 121 QRGMCILSGSGCVTNVTLRQPATSGSIVTLHGR 143

[Close]
BLAST of Csa1G024970 vs. TrEMBL
Match: A0A067F0S4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g040216mg PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 1.5e-44
Identity = 101/153 (66.01%), Postives = 120/153 (78.43%), Query Frame = 1 

Query: 1   MAGGDQADMAVHSLGSKLSLISDHEPEKCGNNNVTNNHQQRPCFDPSLVSPKVVPPIS-V 60
           MAGG   D+ VHS+ +K ++  + E +K        NHQ RP  D  L+ P+V   +S V
Sbjct: 1   MAGG--TDLNVHSVATKAAVDRNQELDK-------GNHQ-RPGTDAMLMPPRVAKAVSPV 60

Query: 61  AAESDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSTGCDVNESLSNFARRK 120
           +A   + LRRPRGRPAGSKNKPKPPIIVTRDSANALRAHA+EVS+GCDV+ESL+NFARRK
Sbjct: 61  SAADGETLRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAMEVSSGCDVSESLANFARRK 120

Query: 121 QRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR 153
           QRG+CILSGSGCVTNVTLRQ A+SG+IVTLHGR
Sbjct: 121 QRGICILSGSGCVTNVTLRQPATSGSIVTLHGR 143

[Close]
BLAST of Csa1G024970 vs. TrEMBL
Match: W9RSZ9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021386 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 7.4e-44
Identity = 101/155 (65.16%), Postives = 120/155 (77.42%), Query Frame = 1 

Query: 1   MAGGDQADMAVHSLGSKLSLISDHEPEKCGNNNVTNNHQQRPCFDPSLVSPKV---VPPI 60
           MAGG   D AV S+ SK ++  + E +K        N   +P  +  L+SPK+   VPP+
Sbjct: 1   MAGG--VDQAVPSVISKTAIDRNQELDK-------GNLHHKPGMESLLMSPKIPKAVPPV 60

Query: 61  SVAAESDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSTGCDVNESLSNFAR 120
           S A + + ++RRPRGRPAGSKNKPKPPIIVTRDSANALRAHA+EVS+GCDV+ESL+NFAR
Sbjct: 61  SSAPDGE-SIRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAMEVSSGCDVSESLANFAR 120

Query: 121 RKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR 153
           RKQRG+CILSGSGCVTNVTLRQ  SSGAIVTLHGR
Sbjct: 121 RKQRGICILSGSGCVTNVTLRQPTSSGAIVTLHGR 145

[Close]
BLAST of Csa1G024970 vs. TAIR10
Match: AT2G42940.1 (AT2G42940.1 Predicted AT-hook DNA-binding family protein)

HSP 1 Score: 161.4 bits (407), Expect = 4.5e-40
Identity = 91/152 (59.87%), Postives = 110/152 (72.37%), Query Frame = 1 

Query: 1   MAGGDQADMAVHSLGSKLSLISDHEPEKCGNNNVTNNHQQRPCFDPSLVSPKVVPPISVA 60
           MAGG    +   S+GSK   + +HE  + GN   TNN+ +          PK V P+S +
Sbjct: 1   MAGGTA--LTPTSVGSKSVPMRNHEATERGN---TNNNLR--------ALPKAVQPVS-S 60

Query: 61  AESDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSTGCDVNESLSNFARRKQ 120
            E + A +RPRGRPAGSKNKPKPPIIVT DS N+LRA+A+E+S+GCD+ E+LS+FARRKQ
Sbjct: 61  IEGEMA-KRPRGRPAGSKNKPKPPIIVTHDSPNSLRANAVEISSGCDICETLSDFARRKQ 120

Query: 121 RGVCILSGSGCVTNVTLRQAASSGAIVTLHGR 153
           RG+CILS +GCVTNVTLRQ ASSGAIVTLHGR
Sbjct: 121 RGLCILSANGCVTNVTLRQPASSGAIVTLHGR 137

[Close]
BLAST of Csa1G024970 vs. TAIR10
Match: AT2G35270.1 (AT2G35270.1 Predicted AT-hook DNA-binding family protein)

HSP 1 Score: 134.8 bits (338), Expect = 4.5e-32
Identity = 60/88 (68.18%), Postives = 74/88 (84.09%), Query Frame = 1 

Query: 64  DQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSTGCDVNESLSNFARRKQRGV 123
           D  +RRPRGRPAGSKNKPKPP+IVTR+SAN LRAH +EV +GCDV E +S +ARR+QRG+
Sbjct: 74  DLVMRRPRGRPAGSKNKPKPPVIVTRESANTLRAHILEVGSGCDVFECISTYARRRQRGI 133

Query: 124 CILSGSGCVTNVTLRQAASSGAIVTLHG 152
           C+LSG+G VTNV++RQ  ++GA+VTL G
Sbjct: 134 CVLSGTGTVTNVSIRQPTAAGAVVTLRG 161

[Close]
BLAST of Csa1G024970 vs. TAIR10
Match: AT4G22810.1 (AT4G22810.1 Predicted AT-hook DNA-binding family protein)

HSP 1 Score: 132.1 bits (331), Expect = 2.9e-31
Identity = 62/91 (68.13%), Postives = 74/91 (81.32%), Query Frame = 1 

Query: 65  QALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSTGCDVNESLSNFARRKQRGVC 124
           Q  RRPRGRPAGSKNKPKPPII+TRDSANALR H +E+  GCD+ ES++ FARR+QRGVC
Sbjct: 102 QMTRRPRGRPAGSKNKPKPPIIITRDSANALRTHVMEIGDGCDLVESVATFARRRQRGVC 161

Query: 125 ILSGSGCVTNVTLRQAA---SSGAIVTLHGR 153
           ++SG+G VTNVT+RQ     S G++V+LHGR
Sbjct: 162 VMSGTGNVTNVTIRQPGSHPSPGSVVSLHGR 192

[Close]
BLAST of Csa1G024970 vs. TAIR10
Match: AT2G45430.1 (AT2G45430.1 AT-hook motif nuclear-localized protein 22)

HSP 1 Score: 132.1 bits (331), Expect = 2.9e-31
Identity = 62/89 (69.66%), Postives = 74/89 (83.15%), Query Frame = 1 

Query: 68  RRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSTGCDVNESLSNFARRKQRGVCILS 127
           RRPRGRPAGSKNKPKPPII+TRDSANAL++H +EV+ GCDV ES++ FARR+QRG+C+LS
Sbjct: 89  RRPRGRPAGSKNKPKPPIIITRDSANALKSHVMEVANGCDVMESVTVFARRRQRGICVLS 148

Query: 128 GSGCVTNVTLRQAAS----SGAIVTLHGR 153
           G+G VTNVT+RQ AS      ++V LHGR
Sbjct: 149 GNGAVTNVTIRQPASVPGGGSSVVNLHGR 177

[Close]
BLAST of Csa1G024970 vs. TAIR10
Match: AT4G12050.1 (AT4G12050.1 Predicted AT-hook DNA-binding family protein)

HSP 1 Score: 129.4 bits (324), Expect = 1.9e-30
Identity = 59/90 (65.56%), Postives = 73/90 (81.11%), Query Frame = 1 

Query: 64  DQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSTGCDVNESLSNFARRKQRGV 123
           +Q  RRPRGRPAGSKNKPK PII+TRDSANALR H +E+  GCD+ + ++ FARR+QRGV
Sbjct: 114 EQMTRRPRGRPAGSKNKPKAPIIITRDSANALRTHVMEIGDGCDIVDCMATFARRRQRGV 173

Query: 124 CILSGSGCVTNVTLRQAAS-SGAIVTLHGR 153
           C++SG+G VTNVT+RQ  S  G++V+LHGR
Sbjct: 174 CVMSGTGSVTNVTIRQPGSPPGSVVSLHGR 203

[Close]
BLAST of Csa1G024970 vs. NCBI nr
Match: gi|778656460|ref|XP_011649113.1| (PREDICTED: AT-hook motif nuclear-localized protein 16 [Cucumis sativus])

HSP 1 Score: 307.4 bits (786), Expect = 1.4e-80
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1 

Query: 1   MAGGDQADMAVHSLGSKLSLISDHEPEKCGNNNVTNNHQQRPCFDPSLVSPKVVPPISVA 60
           MAGGDQADMAVHSLGSKLSLISDHEPEKCGNNNVTNNHQQRPCFDPSLVSPKVVPPISVA
Sbjct: 3   MAGGDQADMAVHSLGSKLSLISDHEPEKCGNNNVTNNHQQRPCFDPSLVSPKVVPPISVA 62

Query: 61  AESDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSTGCDVNESLSNFARRKQ 120
           AESDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSTGCDVNESLSNFARRKQ
Sbjct: 63  AESDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSTGCDVNESLSNFARRKQ 122

Query: 121 RGVCILSGSGCVTNVTLRQAASSGAIVTLHGR 153
           RGVCILSGSGCVTNVTLRQAASSGAIVTLHGR
Sbjct: 123 RGVCILSGSGCVTNVTLRQAASSGAIVTLHGR 154

[Close]
BLAST of Csa1G024970 vs. NCBI nr
Match: gi|700208769|gb|KGN63865.1| (hypothetical protein Csa_1G024970 [Cucumis sativus])

HSP 1 Score: 307.4 bits (786), Expect = 1.4e-80
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1 

Query: 1   MAGGDQADMAVHSLGSKLSLISDHEPEKCGNNNVTNNHQQRPCFDPSLVSPKVVPPISVA 60
           MAGGDQADMAVHSLGSKLSLISDHEPEKCGNNNVTNNHQQRPCFDPSLVSPKVVPPISVA
Sbjct: 1   MAGGDQADMAVHSLGSKLSLISDHEPEKCGNNNVTNNHQQRPCFDPSLVSPKVVPPISVA 60

Query: 61  AESDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSTGCDVNESLSNFARRKQ 120
           AESDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSTGCDVNESLSNFARRKQ
Sbjct: 61  AESDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSTGCDVNESLSNFARRKQ 120

Query: 121 RGVCILSGSGCVTNVTLRQAASSGAIVTLHGR 153
           RGVCILSGSGCVTNVTLRQAASSGAIVTLHGR
Sbjct: 121 RGVCILSGSGCVTNVTLRQAASSGAIVTLHGR 152

[Close]
BLAST of Csa1G024970 vs. NCBI nr
Match: gi|659106919|ref|XP_008453469.1| (PREDICTED: putative DNA-binding protein ESCAROLA [Cucumis melo])

HSP 1 Score: 299.7 bits (766), Expect = 3.0e-78
Identity = 150/153 (98.04%), Postives = 152/153 (99.35%), Query Frame = 1 

Query: 1   MAGGDQADMAVHSLGSKLSLISDHEPEKCG-NNNVTNNHQQRPCFDPSLVSPKVVPPISV 60
           MAGGDQADMAVHSLGSKLSLIS+HEPEKCG NNNVTNNHQQRPCFDPSLVSPKVVPPISV
Sbjct: 3   MAGGDQADMAVHSLGSKLSLISEHEPEKCGSNNNVTNNHQQRPCFDPSLVSPKVVPPISV 62

Query: 61  AAESDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSTGCDVNESLSNFARRK 120
           AAESDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVS+GCDVNESLSNFARRK
Sbjct: 63  AAESDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSSGCDVNESLSNFARRK 122

Query: 121 QRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR 153
           QRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR
Sbjct: 123 QRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR 155

[Close]
BLAST of Csa1G024970 vs. NCBI nr
Match: gi|645246667|ref|XP_008229461.1| (PREDICTED: putative DNA-binding protein ESCAROLA [Prunus mume])

HSP 1 Score: 192.6 bits (488), Expect = 5.1e-46
Identity = 105/155 (67.74%), Postives = 123/155 (79.35%), Query Frame = 1 

Query: 1   MAGGDQADMAVHSLGSKLSLISDHEPEKCGNNNVTNNHQQRPCFDPSLVSPKV---VPPI 60
           MAGG  AD+ V S+ SK ++    + +K       +N   RP  D  L++PK+   VPPI
Sbjct: 1   MAGG--ADLPVPSVVSKTAIDRSQDADK-------SNSHHRPGIDAILMAPKLPKAVPPI 60

Query: 61  SVAAESDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSTGCDVNESLSNFAR 120
           S AAE + ++RRPRGRPAGSKNKPKPPIIVTRDSANALRAHA+EVS+GCDV+ESL+NFAR
Sbjct: 61  SAAAEGE-SIRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAMEVSSGCDVSESLTNFAR 120

Query: 121 RKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR 153
           RKQRG+CILSGSGCVTNVTLRQ ASSGAIVTLHGR
Sbjct: 121 RKQRGICILSGSGCVTNVTLRQPASSGAIVTLHGR 145

[Close]
BLAST of Csa1G024970 vs. NCBI nr
Match: gi|255572333|ref|XP_002527105.1| (PREDICTED: AT-hook motif nuclear-localized protein 16 [Ricinus communis])

HSP 1 Score: 191.8 bits (486), Expect = 8.7e-46
Identity = 105/155 (67.74%), Postives = 124/155 (80.00%), Query Frame = 1 

Query: 1   MAGGDQADMAVHSLGSKLSLISDHEPEKCGNNNVTNNHQQRPCFDPSLVSPKV---VPPI 60
           MAGG  AD+AV  +GSK  + S+ EP + GN        +RP  +  L+SPK+   VPP+
Sbjct: 1   MAGG--ADLAVPPIGSKNIMESNQEPNR-GN-------YRRPGIEAILMSPKLPKSVPPV 60

Query: 61  SVAAESDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSTGCDVNESLSNFAR 120
           S A E +  +RRPRGRPAGSKNKPKPPIIVTRDSANALRAHA+EVS+GCDV+ESL+NFAR
Sbjct: 61  SSAVEGE-TIRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAMEVSSGCDVSESLANFAR 120

Query: 121 RKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGR 153
           R+QRG+C+LSGSGCVTNVTLRQ ASSGAIVTLHGR
Sbjct: 121 RRQRGICVLSGSGCVTNVTLRQPASSGAIVTLHGR 144

The following BLAST results are available for this feature:
BLAST of Csa1G024970 vs. Swiss-Prot
Match NameE-valueIdentityDescription
AHL16_ARATH7.9e-3959.87AT-hook motif nuclear-localized protein 16 OS=Arabidopsis thaliana GN=AHL16 PE=1... [more]
AHL21_ARATH7.9e-3168.18AT-hook motif nuclear-localized protein 21 OS=Arabidopsis thaliana GN=AHL21 PE=2... [more]
AHL24_ARATH5.1e-3068.13AT-hook motif nuclear-localized protein 24 OS=Arabidopsis thaliana GN=AHL24 PE=2... [more]
AHL22_ARATH5.1e-3069.66AT-hook motif nuclear-localized protein 22 OS=Arabidopsis thaliana GN=AHL22 PE=1... [more]
AHL26_ARATH3.3e-2965.56AT-hook motif nuclear-localized protein 26 OS=Arabidopsis thaliana GN=AHL26 PE=2... [more]
BLAST of Csa1G024970 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPP3_CUCSA9.9e-81100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G024970 PE=4 SV=1[more]
B9SM86_RICCO6.1e-4667.74DNA binding protein, putative OS=Ricinus communis GN=RCOM_0297020 PE=4 SV=1[more]
V4TKT7_9ROSI1.1e-4466.67Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032444mg PE=4 SV=1[more]
A0A067F0S4_CITSI1.5e-4466.01Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g040216mg PE=4 SV=1[more]
W9RSZ9_9ROSA7.4e-4465.16Uncharacterized protein OS=Morus notabilis GN=L484_021386 PE=4 SV=1[more]
BLAST of Csa1G024970 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G42940.14.5e-4059.87 Predicted AT-hook DNA-binding family protein[more]
AT2G35270.14.5e-3268.18 Predicted AT-hook DNA-binding family protein[more]
AT4G22810.12.9e-3168.13 Predicted AT-hook DNA-binding family protein[more]
AT2G45430.12.9e-3169.66 AT-hook motif nuclear-localized protein 22[more]
AT4G12050.11.9e-3065.56 Predicted AT-hook DNA-binding family protein[more]
BLAST of Csa1G024970 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778656460|ref|XP_011649113.1|1.4e-80100.00PREDICTED: AT-hook motif nuclear-localized protein 16 [Cucumis sativus][more]
gi|700208769|gb|KGN63865.1|1.4e-80100.00hypothetical protein Csa_1G024970 [Cucumis sativus][more]
gi|659106919|ref|XP_008453469.1|3.0e-7898.04PREDICTED: putative DNA-binding protein ESCAROLA [Cucumis melo][more]
gi|645246667|ref|XP_008229461.1|5.1e-4667.74PREDICTED: putative DNA-binding protein ESCAROLA [Prunus mume][more]
gi|255572333|ref|XP_002527105.1|8.7e-4667.74PREDICTED: AT-hook motif nuclear-localized protein 16 [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005175PPC_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0035067 negative regulation of histone acetylation
biological_process GO:0010529 negative regulation of transposition
biological_process GO:1900111 positive regulation of histone H3-K9 dimethylation
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0009738 abscisic acid-activated signaling pathway
biological_process GO:0000165 MAPK cascade
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway
cellular_component GO:0000785 chromatin
cellular_component GO:0005829 cytosol
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005634 nucleus
molecular_function GO:0031490 chromatin DNA binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0004707 MAP kinase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU177973cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G024970.1Csa1G024970.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU177973CU177973transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005175PPC domainPFAMPF03479DUF296coord: 96..149
score: 3.5
IPR005175PPC domainPROFILEPS51742PPCcoord: 92..152
score: 22
NoneNo IPR availableGENE3DG3DSA:3.30.1330.80coord: 95..151
score: 9.6
NoneNo IPR availablePANTHERPTHR31100FAMILY NOT NAMEDcoord: 38..152
score: 5.8
NoneNo IPR availablePANTHERPTHR31100:SF17AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 16coord: 38..152
score: 5.8
NoneNo IPR availableunknownSSF117856AF0104/ALDC/Ptd012-likecoord: 92..151
score: 1.62

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G024970CmaCh11G003040Cucurbita maxima (Rimu)cmacuB087
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G024970Melon (DHL92) v3.6.1cumedB028
Csa1G024970Melon (DHL92) v3.6.1cumedB047
Csa1G024970Silver-seed gourdcarcuB0416
Csa1G024970Silver-seed gourdcarcuB0622
Csa1G024970Silver-seed gourdcarcuB0801
Csa1G024970Watermelon (97103) v2cuwmbB055
Csa1G024970Watermelon (97103) v2cuwmbB079
Csa1G024970Wax gourdcuwgoB040
Csa1G024970Wax gourdcuwgoB077
Csa1G024970Cucumber (Chinese Long) v2cucuB000
Csa1G024970Cucumber (Gy14) v1cgycuB137
Csa1G024970Cucumber (Gy14) v1cgycuB160
Csa1G024970Cucumber (Gy14) v1cgycuB405
Csa1G024970Cucurbita maxima (Rimu)cmacuB050
Csa1G024970Cucurbita maxima (Rimu)cmacuB221
Csa1G024970Cucurbita maxima (Rimu)cmacuB393
Csa1G024970Cucurbita moschata (Rifu)cmocuB076
Csa1G024970Cucurbita moschata (Rifu)cmocuB039
Csa1G024970Cucurbita moschata (Rifu)cmocuB207
Csa1G024970Melon (DHL92) v3.5.1cumeB033
Csa1G024970Melon (DHL92) v3.5.1cumeB055
Csa1G024970Watermelon (Charleston Gray)cuwcgB058
Csa1G024970Watermelon (Charleston Gray)cuwcgB082
Csa1G024970Watermelon (97103) v1cuwmB063
Csa1G024970Watermelon (97103) v1cuwmB095
Csa1G024970Cucurbita pepo (Zucchini)cpecuB031
Csa1G024970Cucurbita pepo (Zucchini)cpecuB363
Csa1G024970Cucurbita pepo (Zucchini)cpecuB509
Csa1G024970Cucurbita pepo (Zucchini)cpecuB654
Csa1G024970Bottle gourd (USVL1VR-Ls)culsiB025
Csa1G024970Bottle gourd (USVL1VR-Ls)culsiB071
Csa1G024970Cucumber (Gy14) v2cgybcuB001
Csa1G024970Cucumber (Gy14) v2cgybcuB196