Csa1G015620 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G015620
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 2046254 .. 2046757 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGATAGAGATTTGATTGTAAAGTACTCTGCTACACAATGGTCCTAAGATGGAGAGAATTGGCATGCATGATCAAGTGAGACGTGACTTGTGTAAAGTCATTTTCATTGTCTTCCTTCTAAATAGGCCTCACATAAGAATTGTACATTCATGGTTCCAACCGCAATCGCGTTTTCGATTGGGACTTGGCACATGGTGGTGGCTTATGGTGGTCCTTAACTGTAACCCGCCTCCTCCCTGCTCGACGATGCTTCTGACCACTGCAAAACTGGTGTCACCTGCATTGTTTAGACATAATCAAAACATAGTGGTAATGGTGGGGAGATGTAATGGTAGAAATGGATGGTGTGAGCTAAGAATGAAAAGATAGTATTACCTAAACAGACAGATTTGGCACCTACTTTCCCAAGCTAATGGTTTTTTGTTTGTGTGGCCAACAGTGGTTTCCACTGCATATTAAATGGTCCAATGGAGCATCATTAGATGCTCAGTTTCAAGACTCTTAA

mRNA sequence

ATGGAGAGAATTGGCATGCATGATCAAGTGAGACGTGACTTGTGTAAAGTCATTTTCATTGTCTTCCTTCTAAATAGGCCTCACATAAGAATTGTACATTCATGGTTCCAACCGCAATCGCGTTTTCGATTGGGACTTGGCACATGGTGGTGGCTTATGGTGGTCCTTAACTGTAACCCGCCTCCTCCCTGCTCGACGATGCTTCTGACCACTGCAAAACTGGTGTCACCTGCATTGTTTAGACATAATCAAAACATAGTGTGGTTTCCACTGCATATTAAATGGTCCAATGGAGCATCATTAGATGCTCAGTTTCAAGACTCTTAA

Coding sequence (CDS)

ATGGAGAGAATTGGCATGCATGATCAAGTGAGACGTGACTTGTGTAAAGTCATTTTCATTGTCTTCCTTCTAAATAGGCCTCACATAAGAATTGTACATTCATGGTTCCAACCGCAATCGCGTTTTCGATTGGGACTTGGCACATGGTGGTGGCTTATGGTGGTCCTTAACTGTAACCCGCCTCCTCCCTGCTCGACGATGCTTCTGACCACTGCAAAACTGGTGTCACCTGCATTGTTTAGACATAATCAAAACATAGTGTGGTTTCCACTGCATATTAAATGGTCCAATGGAGCATCATTAGATGCTCAGTTTCAAGACTCTTAA

Protein sequence

MERIGMHDQVRRDLCKVIFIVFLLNRPHIRIVHSWFQPQSRFRLGLGTWWWLMVVLNCNPPPPCSTMLLTTAKLVSPALFRHNQNIVWFPLHIKWSNGASLDAQFQDS*
Homology
[Close]
BLAST of Csa1G015620 vs. TrEMBL
Match: A0A0A0LPN0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G015620 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.0e-59
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1 

Query: 1   MERIGMHDQVRRDLCKVIFIVFLLNRPHIRIVHSWFQPQSRFRLGLGTWWWLMVVLNCNP 60
           MERIGMHDQVRRDLCKVIFIVFLLNRPHIRIVHSWFQPQSRFRLGLGTWWWLMVVLNCNP
Sbjct: 1   MERIGMHDQVRRDLCKVIFIVFLLNRPHIRIVHSWFQPQSRFRLGLGTWWWLMVVLNCNP 60

Query: 61  PPPCSTMLLTTAKLVSPALFRHNQNIVWFPLHIKWSNGASLDAQFQDS 109
           PPPCSTMLLTTAKLVSPALFRHNQNIVWFPLHIKWSNGASLDAQFQDS
Sbjct: 61  PPPCSTMLLTTAKLVSPALFRHNQNIVWFPLHIKWSNGASLDAQFQDS 108

[Close]
BLAST of Csa1G015620 vs. NCBI nr
Match: gi|700208672|gb|KGN63768.1| (hypothetical protein Csa_1G015620 [Cucumis sativus])

HSP 1 Score: 236.1 bits (601), Expect = 2.9e-59
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1 

Query: 1   MERIGMHDQVRRDLCKVIFIVFLLNRPHIRIVHSWFQPQSRFRLGLGTWWWLMVVLNCNP 60
           MERIGMHDQVRRDLCKVIFIVFLLNRPHIRIVHSWFQPQSRFRLGLGTWWWLMVVLNCNP
Sbjct: 1   MERIGMHDQVRRDLCKVIFIVFLLNRPHIRIVHSWFQPQSRFRLGLGTWWWLMVVLNCNP 60

Query: 61  PPPCSTMLLTTAKLVSPALFRHNQNIVWFPLHIKWSNGASLDAQFQDS 109
           PPPCSTMLLTTAKLVSPALFRHNQNIVWFPLHIKWSNGASLDAQFQDS
Sbjct: 61  PPPCSTMLLTTAKLVSPALFRHNQNIVWFPLHIKWSNGASLDAQFQDS 108

The following BLAST results are available for this feature:
BLAST of Csa1G015620 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPN0_CUCSA2.0e-59100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G015620 PE=4 SV=1[more]
BLAST of Csa1G015620 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208672|gb|KGN63768.1|2.9e-59100.00hypothetical protein Csa_1G015620 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G015620.1Csa1G015620.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G015620CSPI01G03280Wild cucumber (PI 183967)cpicuB000
Csa1G015620Cucsa.198570Cucumber (Gy14) v1cgycuB299
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G015620Wax gourdcuwgoB043
Csa1G015620Wax gourdcuwgoB080
Csa1G015620Cucumber (Chinese Long) v2cucuB000
Csa1G015620Cucumber (Chinese Long) v2cucuB003
Csa1G015620Cucumber (Gy14) v1cgycuB140
Csa1G015620Cucumber (Gy14) v1cgycuB405
Csa1G015620Cucurbita maxima (Rimu)cmacuB051
Csa1G015620Cucurbita maxima (Rimu)cmacuB087
Csa1G015620Cucurbita maxima (Rimu)cmacuB101
Csa1G015620Cucurbita maxima (Rimu)cmacuB215
Csa1G015620Cucurbita maxima (Rimu)cmacuB221
Csa1G015620Cucurbita maxima (Rimu)cmacuB393
Csa1G015620Cucurbita maxima (Rimu)cmacuB686
Csa1G015620Cucurbita moschata (Rifu)cmocuB076
Csa1G015620Cucurbita moschata (Rifu)cmocuB040
Csa1G015620Cucurbita moschata (Rifu)cmocuB089
Csa1G015620Cucurbita moschata (Rifu)cmocuB201
Csa1G015620Cucurbita moschata (Rifu)cmocuB385
Csa1G015620Melon (DHL92) v3.5.1cumeB010
Csa1G015620Melon (DHL92) v3.5.1cumeB023
Csa1G015620Melon (DHL92) v3.5.1cumeB044
Csa1G015620Watermelon (Charleston Gray)cuwcgB056
Csa1G015620Watermelon (Charleston Gray)cuwcgB058
Csa1G015620Watermelon (Charleston Gray)cuwcgB068
Csa1G015620Watermelon (97103) v1cuwmB061
Csa1G015620Watermelon (97103) v1cuwmB063
Csa1G015620Watermelon (97103) v1cuwmB082
Csa1G015620Cucurbita pepo (Zucchini)cpecuB033
Csa1G015620Cucurbita pepo (Zucchini)cpecuB352
Csa1G015620Cucurbita pepo (Zucchini)cpecuB364
Csa1G015620Cucurbita pepo (Zucchini)cpecuB381
Csa1G015620Cucurbita pepo (Zucchini)cpecuB509
Csa1G015620Cucurbita pepo (Zucchini)cpecuB638
Csa1G015620Bottle gourd (USVL1VR-Ls)culsiB025
Csa1G015620Bottle gourd (USVL1VR-Ls)culsiB042
Csa1G015620Bottle gourd (USVL1VR-Ls)culsiB061
Csa1G015620Cucumber (Gy14) v2cgybcuB001
Csa1G015620Cucumber (Gy14) v2cgybcuB005
Csa1G015620Cucumber (Gy14) v2cgybcuB015
Csa1G015620Melon (DHL92) v3.6.1cumedB019
Csa1G015620Melon (DHL92) v3.6.1cumedB036
Csa1G015620Silver-seed gourdcarcuB0416
Csa1G015620Silver-seed gourdcarcuB0491
Csa1G015620Silver-seed gourdcarcuB0494
Csa1G015620Silver-seed gourdcarcuB0543
Csa1G015620Silver-seed gourdcarcuB0620
Csa1G015620Silver-seed gourdcarcuB0622
Csa1G015620Watermelon (97103) v2cuwmbB053
Csa1G015620Watermelon (97103) v2cuwmbB055
Csa1G015620Watermelon (97103) v2cuwmbB068