Csa1G009620 (gene) Cucumber (Chinese Long) v2

NameCsa1G009620
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionAldose-1-epimerase, putative; contains IPR011013 (Galactose mutarotase-like domain)
LocationChr1 : 1403987 .. 1404614 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAAAATTCTTCCATTGATCTTTCTCTTAGTTGTTGCAACCATTGGGTTTAGTAATGGACATGAAGTGGGGATTTACGAATTGAAAAGAGGGGATTTTTCTATTCAGCTAACTAATTATGGTGCTACCATTCTCTCTCTGATCCTCTCGGATAAAAATGGTTCGTTTCTGTTTTTGTTTTTGCGTTAAACAAAACATTATGATCCAGTGTTCTAACAATTCTCTTAGTTGTTTGTTTTAGGGAAATTGGATGATGTTATTCTTTCTTTCCCTTCAGTTGACGACTTTCGAGTGAGATGATCTTTATGATTTTTGTTTGTTTGTTTGTATATATTTGTTTTGGCAGAATGATATACTACCTATTTTGGTAACATTGTTGGACGTGTAGCAAATAGAATTGGAGGAGCTCAATTTGGTATCAATGGTGTTTTCCACAAACTCGAGGAGCTCATGTTTATCTCAAAGTGGCTCGACGTTGAAGATTAATCCAATTGTGTCTCTTAGCTCATGTTTATCTCAAAGTGGCTCGACGTTGAACATTAATCCAATTGTATCTCGTTTGTGTTTGGATTTGAGTTATGGGTACCATTATTGTGCAATGAATAGTTGTATTATAATTGATTGA

mRNA sequence

ATGGCCAAAATTCTTCCATTGATCTTTCTCTTAGTTGTTGCAACCATTGGGTTTAGTAATGGACATGAAGTGGGGATTTACGAATTGAAAAGAGGGGATTTTTCTATTCAGCTAACTAATTATGGTGCTACCATTCTCTCTCTGATCCTCTCGGATAAAAATGGGAAATTGGATGATGTTATTCTTTCTTTCCCTTCAGTTGACGACTTTCGACAAATAGAATTGGAGGAGCTCAATTTGGTATCAATGGTGTTTTCCACAAACTCGAGGAGCTCATGTTTATCTCAAAGTGGCTCGACGTTGAAGATTAATCCAATTGTGTCTCTTAGCTCATGTTTATCTCAAAGTGGCTCGACGTTGAACATTAATCCAATTGTATCTCGTTTGTGTTTGGATTTGAGTTATGGGTACCATTATTGTGCAATGAATAGTTGTATTATAATTGATTGA

Coding sequence (CDS)

ATGGCCAAAATTCTTCCATTGATCTTTCTCTTAGTTGTTGCAACCATTGGGTTTAGTAATGGACATGAAGTGGGGATTTACGAATTGAAAAGAGGGGATTTTTCTATTCAGCTAACTAATTATGGTGCTACCATTCTCTCTCTGATCCTCTCGGATAAAAATGGGAAATTGGATGATGTTATTCTTTCTTTCCCTTCAGTTGACGACTTTCGACAAATAGAATTGGAGGAGCTCAATTTGGTATCAATGGTGTTTTCCACAAACTCGAGGAGCTCATGTTTATCTCAAAGTGGCTCGACGTTGAAGATTAATCCAATTGTGTCTCTTAGCTCATGTTTATCTCAAAGTGGCTCGACGTTGAACATTAATCCAATTGTATCTCGTTTGTGTTTGGATTTGAGTTATGGGTACCATTATTGTGCAATGAATAGTTGTATTATAATTGATTGA

Protein sequence

MAKILPLIFLLVVATIGFSNGHEVGIYELKRGDFSIQLTNYGATILSLILSDKNGKLDDVILSFPSVDDFRQIELEELNLVSMVFSTNSRSSCLSQSGSTLKINPIVSLSSCLSQSGSTLNINPIVSRLCLDLSYGYHYCAMNSCIIID*
BLAST of Csa1G009620 vs. TrEMBL
Match: A0A0A0LPC7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G009620 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 3.2e-76
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1

Query: 1   MAKILPLIFLLVVATIGFSNGHEVGIYELKRGDFSIQLTNYGATILSLILSDKNGKLDDV 60
           MAKILPLIFLLVVATIGFSNGHEVGIYELKRGDFSIQLTNYGATILSLILSDKNGKLDDV
Sbjct: 1   MAKILPLIFLLVVATIGFSNGHEVGIYELKRGDFSIQLTNYGATILSLILSDKNGKLDDV 60

Query: 61  ILSFPSVDDFRQIELEELNLVSMVFSTNSRSSCLSQSGSTLKINPIVSLSSCLSQSGSTL 120
           ILSFPSVDDFRQIELEELNLVSMVFSTNSRSSCLSQSGSTLKINPIVSLSSCLSQSGSTL
Sbjct: 61  ILSFPSVDDFRQIELEELNLVSMVFSTNSRSSCLSQSGSTLKINPIVSLSSCLSQSGSTL 120

Query: 121 NINPIVSRLCLDLSYGYHYCAMNSCIIID 150
           NINPIVSRLCLDLSYGYHYCAMNSCIIID
Sbjct: 121 NINPIVSRLCLDLSYGYHYCAMNSCIIID 149

BLAST of Csa1G009620 vs. TrEMBL
Match: A0A0A0LRN1_CUCSA (Aldose 1-epimerase OS=Cucumis sativus GN=Csa_1G009630 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 4.9e-24
Identity = 62/85 (72.94%), Postives = 72/85 (84.71%), Query Frame = 1

Query: 1  MAKI-LPLIFLLVVATIGFSNGHEVGIYELKRGDFSIQLTNYGATILSLILSDKNGKLDD 60
          MAK+ LPLIFLLVVA IGFSNG++VGIYEL+RG+ SI+LTNYGATILS+IL DKNGKLDD
Sbjct: 1  MAKVLLPLIFLLVVAAIGFSNGNDVGIYELRRGNVSIKLTNYGATILSVILPDKNGKLDD 60

Query: 61 VILSFPSVDDFRQIELEELNLVSMV 85
          V+LSFPS+DDFR       N+V  V
Sbjct: 61 VVLSFPSIDDFRNDTTYFGNIVGRV 85

BLAST of Csa1G009620 vs. TrEMBL
Match: A0A0A0LG24_CUCSA (Aldose 1-epimerase OS=Cucumis sativus GN=Csa_3G827250 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.9e-13
Identity = 39/76 (51.32%), Postives = 60/76 (78.95%), Query Frame = 1

Query: 1  MAKI-LPLIFLLVVATIGFSNGH----EVGIYELKRGDFSIQLTNYGATILSLILSDKNG 60
          MAK+ L L  ++ +A  GF+NG+    E+GI+ELKRGDFS++ TN+GATI+SL++ DK+G
Sbjct: 24 MAKLFLALFCVIALAVFGFANGYEKKGEIGIFELKRGDFSVKFTNWGATIVSLLVPDKHG 83

Query: 61 KLDDVILSFPSVDDFR 72
          KLDDV+L + S+ +++
Sbjct: 84 KLDDVVLGYDSIQEYQ 99

BLAST of Csa1G009620 vs. TrEMBL
Match: A0A161ZNH6_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_026067 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.1e-13
Identity = 36/64 (56.25%), Postives = 51/64 (79.69%), Query Frame = 1

Query: 7  LIFLLVVATIGFSNGHEVGIYELKRGDFSIQLTNYGATILSLILSDKNGKLDDVILSFPS 66
          L+FL+    I  S G ++GIYELK+GDFSI++TNYGAT+LS++L D+NGK DDV+L + S
Sbjct: 9  LVFLVFNLLIQLSRGGDIGIYELKKGDFSIKVTNYGATVLSVMLPDRNGKFDDVVLGYDS 68

Query: 67 VDDF 71
          + D+
Sbjct: 69 IKDY 72

BLAST of Csa1G009620 vs. TrEMBL
Match: D7SIE1_VITVI (Aldose 1-epimerase OS=Vitis vinifera GN=VIT_17s0000g05870 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 8.7e-13
Identity = 42/74 (56.76%), Postives = 57/74 (77.03%), Query Frame = 1

Query: 1  MAKILPLI-FLLVVATIGFSN--GHEVGIYELKRGDFSIQLTNYGATILSLILSDKNGKL 60
          MAKI  L  FLL+   I   +    E+G+YELKRG+FS++LTNYGAT++S+IL D+NGKL
Sbjct: 1  MAKIRELCCFLLLAFAIAKVSEASSEIGVYELKRGNFSVKLTNYGATVVSVILPDRNGKL 60

Query: 61 DDVILSFPSVDDFR 72
          DDV+L F SV+D++
Sbjct: 61 DDVVLGFDSVEDYK 74

BLAST of Csa1G009620 vs. TAIR10
Match: AT5G15140.1 (AT5G15140.1 Galactose mutarotase-like superfamily protein)

HSP 1 Score: 60.8 bits (146), Expect = 8.0e-10
Identity = 23/49 (46.94%), Postives = 38/49 (77.55%), Query Frame = 1

Query: 23  EVGIYELKRGDFSIQLTNYGATILSLILSDKNGKLDDVILSFPSVDDFR 72
           ++G+YELK+G+ +++ TN+GA+I+SL   DKNGK+DD++L + SV  ++
Sbjct: 159 KIGLYELKKGNLTVKFTNWGASIISLHFPDKNGKMDDIVLGYDSVKTYK 207

BLAST of Csa1G009620 vs. TAIR10
Match: AT3G47800.1 (AT3G47800.1 Galactose mutarotase-like superfamily protein)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-09
Identity = 24/64 (37.50%), Postives = 42/64 (65.62%), Query Frame = 1

Query: 8  IFLLVVATIGFSNGHEVGIYELKRGDFSIQLTNYGATILSLILSDKNGKLDDVILSFPSV 67
          + ++++ ++ +S   ++  Y+L RG  S+  TNYGA + SL+L D++GK DDV+L F +V
Sbjct: 15 VLMVLLCSVNYSLCEKIKTYKLTRGSLSVTFTNYGAVMTSLLLPDRHGKQDDVVLGFDTV 74

Query: 68 DDFR 72
          D ++
Sbjct: 75 DGYK 78

BLAST of Csa1G009620 vs. TAIR10
Match: AT3G17940.1 (AT3G17940.1 Galactose mutarotase-like superfamily protein)

HSP 1 Score: 54.7 bits (130), Expect = 5.8e-08
Identity = 24/45 (53.33%), Postives = 30/45 (66.67%), Query Frame = 1

Query: 26 IYELKRGDFSIQLTNYGATILSLILSDKNGKLDDVILSFPSVDDF 71
          I+EL  G   ++++NYG TI SL + DKNGKL DV+L F SVD +
Sbjct: 11 IFELNNGTMQVKISNYGTTITSLSVPDKNGKLGDVVLGFDSVDPY 55

BLAST of Csa1G009620 vs. TAIR10
Match: AT3G01260.1 (AT3G01260.1 Galactose mutarotase-like superfamily protein)

HSP 1 Score: 51.6 bits (122), Expect = 4.9e-07
Identity = 20/44 (45.45%), Postives = 34/44 (77.27%), Query Frame = 1

Query: 26  IYELKRGDFSIQLTNYGATILSLILSDKNGKLDDVILSFPSVDD 70
           ++ELK+G+ +++ TN GA+I+SL+  + NGKL+D++L + SV+D
Sbjct: 121 VHELKKGNLTVKFTNRGASIMSLLFPNINGKLEDIVLGYDSVND 164

BLAST of Csa1G009620 vs. NCBI nr
Match: gi|700208562|gb|KGN63658.1| (hypothetical protein Csa_1G009620 [Cucumis sativus])

HSP 1 Score: 292.4 bits (747), Expect = 4.6e-76
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1

Query: 1   MAKILPLIFLLVVATIGFSNGHEVGIYELKRGDFSIQLTNYGATILSLILSDKNGKLDDV 60
           MAKILPLIFLLVVATIGFSNGHEVGIYELKRGDFSIQLTNYGATILSLILSDKNGKLDDV
Sbjct: 1   MAKILPLIFLLVVATIGFSNGHEVGIYELKRGDFSIQLTNYGATILSLILSDKNGKLDDV 60

Query: 61  ILSFPSVDDFRQIELEELNLVSMVFSTNSRSSCLSQSGSTLKINPIVSLSSCLSQSGSTL 120
           ILSFPSVDDFRQIELEELNLVSMVFSTNSRSSCLSQSGSTLKINPIVSLSSCLSQSGSTL
Sbjct: 61  ILSFPSVDDFRQIELEELNLVSMVFSTNSRSSCLSQSGSTLKINPIVSLSSCLSQSGSTL 120

Query: 121 NINPIVSRLCLDLSYGYHYCAMNSCIIID 150
           NINPIVSRLCLDLSYGYHYCAMNSCIIID
Sbjct: 121 NINPIVSRLCLDLSYGYHYCAMNSCIIID 149

BLAST of Csa1G009620 vs. NCBI nr
Match: gi|659105860|ref|XP_008453190.1| (PREDICTED: aldose 1-epimerase-like [Cucumis melo])

HSP 1 Score: 124.4 bits (311), Expect = 1.7e-25
Identity = 63/84 (75.00%), Postives = 72/84 (85.71%), Query Frame = 1

Query: 1  MAKILPLIFLLVVATIGFSNGHEVGIYELKRGDFSIQLTNYGATILSLILSDKNGKLDDV 60
          MAK+LPLIFLLVV+ IGFSNG++VGIYEL+RG+FSI+LTNYGATILSLIL DKNGK DDV
Sbjct: 1  MAKVLPLIFLLVVSVIGFSNGNDVGIYELRRGNFSIKLTNYGATILSLILPDKNGKWDDV 60

Query: 61 ILSFPSVDDFRQIELEELNLVSMV 85
          +LSFPSVDDFR       N+V  V
Sbjct: 61 VLSFPSVDDFRNDTTYFGNIVGRV 84

BLAST of Csa1G009620 vs. NCBI nr
Match: gi|449441055|ref|XP_004138299.1| (PREDICTED: aldose 1-epimerase [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 7.0e-24
Identity = 62/85 (72.94%), Postives = 72/85 (84.71%), Query Frame = 1

Query: 1  MAKI-LPLIFLLVVATIGFSNGHEVGIYELKRGDFSIQLTNYGATILSLILSDKNGKLDD 60
          MAK+ LPLIFLLVVA IGFSNG++VGIYEL+RG+ SI+LTNYGATILS+IL DKNGKLDD
Sbjct: 1  MAKVLLPLIFLLVVAAIGFSNGNDVGIYELRRGNVSIKLTNYGATILSVILPDKNGKLDD 60

Query: 61 VILSFPSVDDFRQIELEELNLVSMV 85
          V+LSFPS+DDFR       N+V  V
Sbjct: 61 VVLSFPSIDDFRNDTTYFGNIVGRV 85

BLAST of Csa1G009620 vs. NCBI nr
Match: gi|659107444|ref|XP_008453675.1| (PREDICTED: aldose 1-epimerase [Cucumis melo])

HSP 1 Score: 99.8 bits (247), Expect = 4.4e-18
Identity = 50/54 (92.59%), Postives = 52/54 (96.30%), Query Frame = 1

Query: 1  MAKILPLIFLLVVATIGFSNGHEVGIYELKRGDFSIQLTNYGATILSLILSDKN 55
          MAKILP IFLLVVATIGFSNGHEVGI+ELKRGDFSIQLTNYGATILS+IL DKN
Sbjct: 1  MAKILPPIFLLVVATIGFSNGHEVGIFELKRGDFSIQLTNYGATILSVILPDKN 54

BLAST of Csa1G009620 vs. NCBI nr
Match: gi|778685582|ref|XP_004147466.2| (PREDICTED: aldose 1-epimerase-like [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 5.6e-13
Identity = 39/76 (51.32%), Postives = 60/76 (78.95%), Query Frame = 1

Query: 1  MAKI-LPLIFLLVVATIGFSNGH----EVGIYELKRGDFSIQLTNYGATILSLILSDKNG 60
          MAK+ L L  ++ +A  GF+NG+    E+GI+ELKRGDFS++ TN+GATI+SL++ DK+G
Sbjct: 24 MAKLFLALFCVIALAVFGFANGYEKKGEIGIFELKRGDFSVKFTNWGATIVSLLVPDKHG 83

Query: 61 KLDDVILSFPSVDDFR 72
          KLDDV+L + S+ +++
Sbjct: 84 KLDDVVLGYDSIQEYQ 99

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LPC7_CUCSA3.2e-76100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G009620 PE=4 SV=1[more]
A0A0A0LRN1_CUCSA4.9e-2472.94Aldose 1-epimerase OS=Cucumis sativus GN=Csa_1G009630 PE=3 SV=1[more]
A0A0A0LG24_CUCSA3.9e-1351.32Aldose 1-epimerase OS=Cucumis sativus GN=Csa_3G827250 PE=3 SV=1[more]
A0A161ZNH6_DAUCA5.1e-1356.25Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_026067 PE=4 SV=1[more]
D7SIE1_VITVI8.7e-1356.76Aldose 1-epimerase OS=Vitis vinifera GN=VIT_17s0000g05870 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT5G15140.18.0e-1046.94 Galactose mutarotase-like superfamily protein[more]
AT3G47800.11.4e-0937.50 Galactose mutarotase-like superfamily protein[more]
AT3G17940.15.8e-0853.33 Galactose mutarotase-like superfamily protein[more]
AT3G01260.14.9e-0745.45 Galactose mutarotase-like superfamily protein[more]
Match NameE-valueIdentityDescription
gi|700208562|gb|KGN63658.1|4.6e-76100.00hypothetical protein Csa_1G009620 [Cucumis sativus][more]
gi|659105860|ref|XP_008453190.1|1.7e-2575.00PREDICTED: aldose 1-epimerase-like [Cucumis melo][more]
gi|449441055|ref|XP_004138299.1|7.0e-2472.94PREDICTED: aldose 1-epimerase [Cucumis sativus][more]
gi|659107444|ref|XP_008453675.1|4.4e-1892.59PREDICTED: aldose 1-epimerase [Cucumis melo][more]
gi|778685582|ref|XP_004147466.2|5.6e-1351.32PREDICTED: aldose 1-epimerase-like [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011013Gal_mutarotase_sf_dom
IPR014718GH-type_carb-bd
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0030246carbohydrate binding
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006094 gluconeogenesis
biological_process GO:0006096 glycolytic process
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0033499 galactose catabolic process via UDP-galactose
biological_process GO:0006006 glucose metabolic process
biological_process GO:0019318 hexose metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0004034 aldose 1-epimerase activity
molecular_function GO:0030246 carbohydrate binding
molecular_function GO:0003824 catalytic activity
molecular_function GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
molecular_function GO:0016853 isomerase activity
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU164900cucumber EST collection version 3.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G009620.1Csa1G009620.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU164900CU164900transcribed_cluster


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011013Galactose mutarotase-like domainunknownSSF74650Galactose mutarotase-likecoord: 18..71
score: 1.7
IPR014718Glycoside hydrolase-type carbohydrate-bindingGENE3DG3DSA:2.70.98.10coord: 19..70
score: 1.5
NoneNo IPR availablePANTHERPTHR10091ALDOSE-1-EPIMERASEcoord: 1..70
score: 2.4
NoneNo IPR availablePANTHERPTHR10091:SF10ALDOSE 1-EPIMERASE-RELATEDcoord: 1..70
score: 2.4

The following gene(s) are paralogous to this gene:

None