Csa1G009080 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G009080
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 1378131 .. 1378392 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACAGTACAGGGGAGCTTCTAAGAAAATTCAGAAAGTTAAAAGATAATAAGAATAAGAAAAGGTGATGGTTGAAATTGAATAACAATANNNNNNNNNNNNNNNNNNNNTATATAGTAATTATATTTATATAGATAGTAATAATAATAATTTAGTAGAGGAATGGGAGATGAACCGACCCGACCCGGTCCAGTAGGGCAACCAAGTTTGCTGGCTAACCTCGGGATCAAGGCCGTTGACTCCATATTATTAAGGATATAA

mRNA sequence

ATGTACAGTACAGGGGAGCTTCTAAGAAAATTCAGAAAGTTAAAAGATAATAAGAATAAGAAAAGTAGAGGAATGGGAGATGAACCGACCCGACCCGGTCCAGTAGGGCAACCAAGTTTGCTGGCTAACCTCGGGATCAAGGCCGTTGACTCCATATTATTAAGGATATAA

Coding sequence (CDS)

ATGTACAGTACAGGGGAGCTTCTAAGAAAATTCAGAAAGTTAAAAGATAATAAGAATAAGAAAAGTAGAGGAATGGGAGATGAACCGACCCGACCCGGTCCAGTAGGGCAACCAAGTTTGCTGGCTAACCTCGGGATCAAGGCCGTTGACTCCATATTATTAAGGATATAA

Protein sequence

MYSTGELLRKFRKLKDNKNKKSRGMGDEPTRPGPVGQPSLLANLGIKAVDSILLRI*
Homology
[Close]
BLAST of Csa1G009080 vs. TrEMBL
Match: A0A0A0LPC2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G009080 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 6.0e-23
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 

Query: 1  MYSTGELLRKFRKLKDNKNKKSRGMGDEPTRPGPVGQPSLLANLGIKAVDSILLRI 57
          MYSTGELLRKFRKLKDNKNKKSRGMGDEPTRPGPVGQPSLLANLGIKAVDSILLRI
Sbjct: 1  MYSTGELLRKFRKLKDNKNKKSRGMGDEPTRPGPVGQPSLLANLGIKAVDSILLRI 56

[Close]
BLAST of Csa1G009080 vs. NCBI nr
Match: gi|700208557|gb|KGN63653.1| (hypothetical protein Csa_1G009080 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 8.6e-23
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 

Query: 1  MYSTGELLRKFRKLKDNKNKKSRGMGDEPTRPGPVGQPSLLANLGIKAVDSILLRI 57
          MYSTGELLRKFRKLKDNKNKKSRGMGDEPTRPGPVGQPSLLANLGIKAVDSILLRI
Sbjct: 1  MYSTGELLRKFRKLKDNKNKKSRGMGDEPTRPGPVGQPSLLANLGIKAVDSILLRI 56

The following BLAST results are available for this feature:
BLAST of Csa1G009080 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPC2_CUCSA6.0e-23100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G009080 PE=4 SV=1[more]
BLAST of Csa1G009080 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208557|gb|KGN63653.1|8.6e-23100.00hypothetical protein Csa_1G009080 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G009080.1Csa1G009080.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G009080Cucurbita pepo (Zucchini)cpecuB361
Csa1G009080Cucurbita pepo (Zucchini)cpecuB520
Csa1G009080Cucurbita pepo (Zucchini)cpecuB653
Csa1G009080Bottle gourd (USVL1VR-Ls)culsiB070
Csa1G009080Bottle gourd (USVL1VR-Ls)culsiB035
Csa1G009080Bottle gourd (USVL1VR-Ls)culsiB043
Csa1G009080Bottle gourd (USVL1VR-Ls)culsiB056
Csa1G009080Cucumber (Gy14) v2cgybcuB001
Csa1G009080Cucumber (Gy14) v2cgybcuB011
Csa1G009080Melon (DHL92) v3.6.1cumedB004
Csa1G009080Melon (DHL92) v3.6.1cumedB014
Csa1G009080Melon (DHL92) v3.6.1cumedB046
Csa1G009080Melon (DHL92) v3.6.1cumedB060
Csa1G009080Silver-seed gourdcarcuB0391
Csa1G009080Silver-seed gourdcarcuB0638
Csa1G009080Silver-seed gourdcarcuB1018
Csa1G009080Watermelon (97103) v2cuwmbB004
Csa1G009080Watermelon (97103) v2cuwmbB060
Csa1G009080Watermelon (97103) v2cuwmbB078
Csa1G009080Watermelon (97103) v2cuwmbB091
Csa1G009080Wax gourdcuwgoB009
Csa1G009080Wax gourdcuwgoB060
Csa1G009080Wax gourdcuwgoB070
Csa1G009080Wax gourdcuwgoB095
Csa1G009080Cucumber (Chinese Long) v2cucuB001
Csa1G009080Cucumber (Chinese Long) v2cucuB029
Csa1G009080Watermelon (97103) v1cuwmB094
Csa1G009080Cucumber (Gy14) v1cgycuB107
Csa1G009080Cucumber (Gy14) v1cgycuB299
Csa1G009080Cucumber (Gy14) v1cgycuB404
Csa1G009080Cucumber (Gy14) v1cgycuB475
Csa1G009080Cucurbita maxima (Rimu)cmacuB048
Csa1G009080Cucurbita maxima (Rimu)cmacuB097
Csa1G009080Cucurbita maxima (Rimu)cmacuB209
Csa1G009080Cucurbita maxima (Rimu)cmacuB235
Csa1G009080Cucurbita maxima (Rimu)cmacuB685
Csa1G009080Cucurbita moschata (Rifu)cmocuB076
Csa1G009080Cucurbita moschata (Rifu)cmocuB037
Csa1G009080Cucurbita moschata (Rifu)cmocuB194
Csa1G009080Cucurbita moschata (Rifu)cmocuB222
Csa1G009080Cucurbita moschata (Rifu)cmocuB673
Csa1G009080Melon (DHL92) v3.5.1cumeB009
Csa1G009080Melon (DHL92) v3.5.1cumeB019
Csa1G009080Melon (DHL92) v3.5.1cumeB054
Csa1G009080Watermelon (Charleston Gray)cuwcgB003
Csa1G009080Watermelon (Charleston Gray)cuwcgB015
Csa1G009080Watermelon (Charleston Gray)cuwcgB062
Csa1G009080Watermelon (Charleston Gray)cuwcgB081
Csa1G009080Watermelon (97103) v1cuwmB003
Csa1G009080Watermelon (97103) v1cuwmB037
Csa1G009080Watermelon (97103) v1cuwmB055