Csa1G004320 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G004320
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 792247 .. 795367 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGGCTTCTGCACCTCAAATTTCCATGGTTACATTTCATTCAGCTGATGGCTTGAATTGAATTCAAGCAGTCAGTAGCTTTCTAAAGGAAGAGGCAAGTGATCTTTAACTTCATCCACTTTCATAAAGTCAATTACACGAGTCTCTATTCACAAAAATAACCTGAAATTCATTCATACTCCACACCTGGAGCCACACCCTTTTTTCTTCAACTCTATCTACGATCTCATAGATCTGGTCTGTTTGGATTCTTTCCCTTTTCCCTTTTTGCTGTAGAGATTGGATTAGCTTCTTGCATTTTAGATTCCTACTTTATGGGTTTTCGATATTTTTAGGGGTTCTTCTAATTGGTAGTTTAAATTGTAGCTGACGGTAGAGTTTCTTTTCTTGGTGATTTGTTTTCTGTTAAAATTTTCAGTATGGAAGAACCCAATGAAGCTGGACATGAGAGTACTACAGATAAGTCAAATTATTGATATGGGTATCCAAGTTCATTCATTACTGAACACCAATGGTTTTACGTTCCTTCAGGTCAAGTTAGGATATGAAATCTAGTCGGAGAACATTTTATAACAACTTGGGAAAACAATGTAGATAACCATTGTCTTTTTTTCTAGAAGATGGAAATAAGCTTGTTTGTTGAAATGATACTAACACTCTAGAGATAATAAAGGAAACAAAACAGAAATAACCAACAAACAAAATCAAGTATGTTGCAGATACTTAGTAAGAGATTACAAGCTATCTATTTGAAGAAGAAAATAAAATGACTTCAATTTAAACTGATGTCTTGAATTGAATAGTCTATAAAAGTTTGAAAAGACGGCACGGAGAGAAGGTTTTAACTTGAGTAATCTCTTAAGAAACTTTTTTGCTCGCGGTAGTATCTCTATGGTTAGCATTTGATGGAGCTTTGTTTACATTTTCACTCGGATATACGAAATTGCATTTGTGGGGTTGATCGCAATAAAAATGGACGTTTACTGTTAGAATTTGACAGAAATGGAATGTTGATTACTATTATGTAATGTAACATGCTCATAAGGATGCATAATGCCTTCCCACTAGATTTTGGAGATGTAACTAGACATAAGGCATATGGGTAATGTGTGTAATGCTGATTAATGCCTACAGACGAATGTATATTCTATTTCTTAAACTTATATATATTCTTCTTATGGATGCTTCCAAGAAGGGGACGTGGCCCGAACTTCAATACTTAGTTGTGGCTTTAAATCTTCAAATTGGTAAAGCTCATCTCATTCTTCTACCATGGAAGGACCTTGAAGGCATAAATAGACTATGGTCGCCCTTGTAGTCCTAGTAAACTTGTGAAGGAATCTTTAAGATAGAATATATGTTGTTCATTCGTGAAGCTTCTATGTTATCATTTCTCATTGAATACTGCGAAAATCTCTACCATGTTATCCTTTAGAAAAACTAATGGATTCTTGTGAATGTCTATTTCTTTTCTTGCATTTTAAGGGATTCATTACAATTACAACATCCTCCAGCCTTTTATCATGGAGTCAGAGAATGAAGTTGAAGCCATGTATAGAGACTTCGAATTTTCTTGGGAAAGCTGATAGGTGTATGCTATTAAACCAAAAGATCCAATTAAGTGCCCTTTAGTTCTGATATGAATACAAGTTGCTGGTAAACTCATGAAATCAACTTGTGCATGCCTTTTGAACTAGATTTAGGCCACTGATCAGAGAGAATAGCTAATGTAGATACACTATAACAATTTTGAAATGTGGATAAAGATATGACGGTGTCGACTAATTTCATTCCATGTACACATATTCATTTTTTGGACAAAAAGTTGTGTATTGAATGAACACATCCTAAATTTTGCCTGTAAAGATATATATTGTAAAAAGGGTTGAGTGATTTAAAGAAAAATATTTTAAAACTGTTATTTTAGTTTGTAGCTACACTTGGTATGAAAATATTTTAAATATTTGTGAATGAATATTTATATATATATATATATGCTGACATATATAAAAGGTGGACATAAGTTTTTTTTTTTTTTTTTAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTAAAAAGAACTAATTTCTCAAATCCTTTATTTATTTATTCTTTTTCCCTCCATTCCCTCGTTTCTCTCACACGCCGCCCTTCTTTCTTCTCACGAACGTGAACGGCCCTTTTCCCTTCCGATTTTCTTCTCACCGGAATTTTCTTATCGCCGGACGCCCCCCCAACCGCCGGACTTCTTCTTGTCGATCGCTGCCACCAAATTTCTTCTTCGCGGAACGCCCCACAGGATTTCTTCTTGTCGAAAGCCGGTTTCACCCTAAACCCGTTCACTTCAACGAACGGGTCGACCACGTTCTGTCGCCCCAAGCTCCATTAGGTGCTCTTACTTGTTACCACTTAATCTTTGCTTACTGTTTTCTTTGGATTACTAAAGAGAAGGAAAACTCGTGCATCTCTTCTTTATCCTACTACCTGAGGATACCTTTTGCTATTACTATTAGTTTGAATCACAAGTTTGGCTAGGCAATTTTTTTAGATAGAAAACCAAGGAATAAAGTGTTAGTAGTAGGGTTTTACTGTCATTTACTTGCAACTTTCACAAATTCTATAAAATGTCCTTTTGAGTTTTGAATGTTTCATTTTGTGGGGATTAATTGGAGATCTCTTGGTAATAATAATAGGCTGTCAATAAGAGCATAGTGATAATTAACTAAAGTGTCAACATTGATCATTTTTAGAAATTTTATGTTTGGTTTAGAGTTTTTGTCTTTCGCCCTCAAACGTAGACTCTCTCGAATTCAGTCCAATGATGAATTTTGCAGGCCTCTATCTGGCGAAGCATCCTAAGATTCACAGGTGACCCACTGCCGTTTGTTGCTAATACCTTCATTCGAGTCATCAAGTAAGTAACATTTACCTTCTCTCTCTTTCTTCTTAGTCTTTTATCTCTGTTGATGCTAAAATCCCACTCCCATTATGAACAACCCAAAATTGTGACAACATTGTCAAAACCTTCTTCTGTGTTTGATTTCCAGCCAGTTTTGTGTGCTTCACCATATTCTTCCTGAAAAGTAG

mRNA sequence

ATGGGTGGCTTCTGCACCTCAAATTTCCATGTATGGAAGAACCCAATGAAGCTGGACATGAGAGTACTACAGATAAGTCAAATTATTGATATGGGATTTCTTCTTGTCGAAAGCCGGTTTCACCCTAAACCCGTTCACTTCAACGAACGGGTCGACCACGTTCTGTCGCCCCAAGCTCCATTAGATCTCTTGGCCTCTATCTGGCGAAGCATCCTAAGATTCACAGGTGACCCACTGCCGTTTGTTGCTAATACCTTCATTCGAGTCATCAACCAGTTTTGTGTGCTTCACCATATTCTTCCTGAAAAGTAG

Coding sequence (CDS)

ATGGGTGGCTTCTGCACCTCAAATTTCCATGTATGGAAGAACCCAATGAAGCTGGACATGAGAGTACTACAGATAAGTCAAATTATTGATATGGGATTTCTTCTTGTCGAAAGCCGGTTTCACCCTAAACCCGTTCACTTCAACGAACGGGTCGACCACGTTCTGTCGCCCCAAGCTCCATTAGATCTCTTGGCCTCTATCTGGCGAAGCATCCTAAGATTCACAGGTGACCCACTGCCGTTTGTTGCTAATACCTTCATTCGAGTCATCAACCAGTTTTGTGTGCTTCACCATATTCTTCCTGAAAAGTAG

Protein sequence

MGGFCTSNFHVWKNPMKLDMRVLQISQIIDMGFLLVESRFHPKPVHFNERVDHVLSPQAPLDLLASIWRSILRFTGDPLPFVANTFIRVINQFCVLHHILPEK*
Homology
[Close]
BLAST of Csa1G004320 vs. TrEMBL
Match: A0A0A0LNV9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G004320 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 5.4e-54
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MGGFCTSNFHVWKNPMKLDMRVLQISQIIDMGFLLVESRFHPKPVHFNERVDHVLSPQAP 60
           MGGFCTSNFHVWKNPMKLDMRVLQISQIIDMGFLLVESRFHPKPVHFNERVDHVLSPQAP
Sbjct: 1   MGGFCTSNFHVWKNPMKLDMRVLQISQIIDMGFLLVESRFHPKPVHFNERVDHVLSPQAP 60

Query: 61  LDLLASIWRSILRFTGDPLPFVANTFIRVINQFCVLHHILPEK 104
           LDLLASIWRSILRFTGDPLPFVANTFIRVINQFCVLHHILPEK
Sbjct: 61  LDLLASIWRSILRFTGDPLPFVANTFIRVINQFCVLHHILPEK 103

[Close]
BLAST of Csa1G004320 vs. NCBI nr
Match: gi|700208469|gb|KGN63565.1| (hypothetical protein Csa_1G004320 [Cucumis sativus])

HSP 1 Score: 218.0 bits (554), Expect = 7.7e-54
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MGGFCTSNFHVWKNPMKLDMRVLQISQIIDMGFLLVESRFHPKPVHFNERVDHVLSPQAP 60
           MGGFCTSNFHVWKNPMKLDMRVLQISQIIDMGFLLVESRFHPKPVHFNERVDHVLSPQAP
Sbjct: 1   MGGFCTSNFHVWKNPMKLDMRVLQISQIIDMGFLLVESRFHPKPVHFNERVDHVLSPQAP 60

Query: 61  LDLLASIWRSILRFTGDPLPFVANTFIRVINQFCVLHHILPEK 104
           LDLLASIWRSILRFTGDPLPFVANTFIRVINQFCVLHHILPEK
Sbjct: 61  LDLLASIWRSILRFTGDPLPFVANTFIRVINQFCVLHHILPEK 103

The following BLAST results are available for this feature:
BLAST of Csa1G004320 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNV9_CUCSA5.4e-54100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G004320 PE=4 SV=1[more]
BLAST of Csa1G004320 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208469|gb|KGN63565.1|7.7e-54100.00hypothetical protein Csa_1G004320 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU125136cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G004320.1Csa1G004320.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU125136CU125136transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G004320Cucumber (Gy14) v2cgybcuB001
Csa1G004320Cucumber (Gy14) v2cgybcuB011
Csa1G004320Cucumber (Gy14) v2cgybcuB098
Csa1G004320Melon (DHL92) v3.6.1cumedB014
Csa1G004320Melon (DHL92) v3.6.1cumedB046
Csa1G004320Silver-seed gourdcarcuB0391
Csa1G004320Silver-seed gourdcarcuB1018
Csa1G004320Silver-seed gourdcarcuB1062
Csa1G004320Watermelon (97103) v2cuwmbB013
Csa1G004320Watermelon (97103) v2cuwmbB078
Csa1G004320Watermelon (97103) v2cuwmbB090
Csa1G004320Wax gourdcuwgoB007
Csa1G004320Wax gourdcuwgoB059
Csa1G004320Wax gourdcuwgoB070
Csa1G004320Wax gourdcuwgoB095
Csa1G004320Cucumber (Chinese Long) v2cucuB001
Csa1G004320Watermelon (97103) v1cuwmB094
Csa1G004320Cucumber (Gy14) v1cgycuB107
Csa1G004320Cucumber (Gy14) v1cgycuB299
Csa1G004320Cucumber (Gy14) v1cgycuB475
Csa1G004320Cucurbita maxima (Rimu)cmacuB048
Csa1G004320Cucurbita maxima (Rimu)cmacuB086
Csa1G004320Cucurbita maxima (Rimu)cmacuB209
Csa1G004320Cucurbita maxima (Rimu)cmacuB402
Csa1G004320Cucurbita moschata (Rifu)cmocuB076
Csa1G004320Cucurbita moschata (Rifu)cmocuB037
Csa1G004320Cucurbita moschata (Rifu)cmocuB194
Csa1G004320Cucurbita moschata (Rifu)cmocuB390
Csa1G004320Melon (DHL92) v3.5.1cumeB019
Csa1G004320Melon (DHL92) v3.5.1cumeB054
Csa1G004320Watermelon (Charleston Gray)cuwcgB002
Csa1G004320Watermelon (Charleston Gray)cuwcgB005
Csa1G004320Watermelon (Charleston Gray)cuwcgB026
Csa1G004320Watermelon (Charleston Gray)cuwcgB081
Csa1G004320Watermelon (97103) v1cuwmB005
Csa1G004320Watermelon (97103) v1cuwmB002
Csa1G004320Watermelon (97103) v1cuwmB037
Csa1G004320Cucurbita pepo (Zucchini)cpecuB025
Csa1G004320Cucurbita pepo (Zucchini)cpecuB361
Csa1G004320Cucurbita pepo (Zucchini)cpecuB520
Csa1G004320Cucurbita pepo (Zucchini)cpecuB653
Csa1G004320Bottle gourd (USVL1VR-Ls)culsiB070
Csa1G004320Bottle gourd (USVL1VR-Ls)culsiB035
Csa1G004320Bottle gourd (USVL1VR-Ls)culsiB045