Csa1G004260 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G004260
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 756955 .. 757288 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGGTCGCCATGGAAGTAAAGCTATCGGTGAAGTAGGCGCCATTTTTCAGTAGCAGGTGAAACCAAAAAGAAAGCGTTTGACAAATTGCGGCTTTTATTCTGTTAGGATCCGCCATTGAATCTGGGCCTGGCCCAACTTAACCCAGCCCAATTTCATTGCTCGAGAAAAACAGAAGTACGGCTGCTACCGGCGATGTTCCACCTTTAGTCTCCTTGCTTGTCCTCACGGCCACGGCGGTTCTGAAAGACGAAAATTTCAGCAAAGCAAATGATGGGTATCGAAATTTGTGGAAAAATAGACAAAGTAAATGGGAAAGGACTGAGTTATAA

mRNA sequence

ATGGCGGGTCGCCATGGAAGTAAAGCTATCGGTGAAGTAGGCGCCATTTTTCACCCAATTTCATTGCTCGAGAAAAACAGAAGTACGGCTGCTACCGGCGATGTTCCACCTTTAGTCTCCTTGCTTGTCCTCACGGCCACGGCGGTTCTGAAAGACGAAAATTTCAGCAAAGCAAATGATGGGTATCGAAATTTGTGGAAAAATAGACAAAGTAAATGGGAAAGGACTGAGTTATAA

Coding sequence (CDS)

ATGGCGGGTCGCCATGGAAGTAAAGCTATCGGTGAAGTAGGCGCCATTTTTCACCCAATTTCATTGCTCGAGAAAAACAGAAGTACGGCTGCTACCGGCGATGTTCCACCTTTAGTCTCCTTGCTTGTCCTCACGGCCACGGCGGTTCTGAAAGACGAAAATTTCAGCAAAGCAAATGATGGGTATCGAAATTTGTGGAAAAATAGACAAAGTAAATGGGAAAGGACTGAGTTATAA

Protein sequence

MAGRHGSKAIGEVGAIFHPISLLEKNRSTAATGDVPPLVSLLVLTATAVLKDENFSKANDGYRNLWKNRQSKWERTEL*
Homology
[Close]
BLAST of Csa1G004260 vs. TrEMBL
Match: A0A0A0LRF6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G004260 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 2.3e-36
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1 

Query: 1  MAGRHGSKAIGEVGAIFHPISLLEKNRSTAATGDVPPLVSLLVLTATAVLKDENFSKAND 60
          MAGRHGSKAIGEVGAIFHPISLLEKNRSTAATGDVPPLVSLLVLTATAVLKDENFSKAND
Sbjct: 1  MAGRHGSKAIGEVGAIFHPISLLEKNRSTAATGDVPPLVSLLVLTATAVLKDENFSKAND 60

Query: 61 GYRNLWKNRQSKWERTEL 79
          GYRNLWKNRQSKWERTEL
Sbjct: 61 GYRNLWKNRQSKWERTEL 78

[Close]
BLAST of Csa1G004260 vs. NCBI nr
Match: gi|700208463|gb|KGN63559.1| (hypothetical protein Csa_1G004260 [Cucumis sativus])

HSP 1 Score: 159.1 bits (401), Expect = 3.2e-36
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1 

Query: 1  MAGRHGSKAIGEVGAIFHPISLLEKNRSTAATGDVPPLVSLLVLTATAVLKDENFSKAND 60
          MAGRHGSKAIGEVGAIFHPISLLEKNRSTAATGDVPPLVSLLVLTATAVLKDENFSKAND
Sbjct: 1  MAGRHGSKAIGEVGAIFHPISLLEKNRSTAATGDVPPLVSLLVLTATAVLKDENFSKAND 60

Query: 61 GYRNLWKNRQSKWERTEL 79
          GYRNLWKNRQSKWERTEL
Sbjct: 61 GYRNLWKNRQSKWERTEL 78

The following BLAST results are available for this feature:
BLAST of Csa1G004260 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRF6_CUCSA2.3e-36100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G004260 PE=4 SV=1[more]
BLAST of Csa1G004260 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208463|gb|KGN63559.1|3.2e-36100.00hypothetical protein Csa_1G004260 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G004260.1Csa1G004260.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G004260Cucurbita pepo (Zucchini)cpecuB025
Csa1G004260Cucurbita pepo (Zucchini)cpecuB361
Csa1G004260Cucurbita pepo (Zucchini)cpecuB520
Csa1G004260Cucurbita pepo (Zucchini)cpecuB653
Csa1G004260Bottle gourd (USVL1VR-Ls)culsiB070
Csa1G004260Bottle gourd (USVL1VR-Ls)culsiB035
Csa1G004260Bottle gourd (USVL1VR-Ls)culsiB045
Csa1G004260Cucumber (Gy14) v2cgybcuB001
Csa1G004260Cucumber (Gy14) v2cgybcuB011
Csa1G004260Cucumber (Gy14) v2cgybcuB098
Csa1G004260Melon (DHL92) v3.6.1cumedB014
Csa1G004260Melon (DHL92) v3.6.1cumedB046
Csa1G004260Silver-seed gourdcarcuB0391
Csa1G004260Silver-seed gourdcarcuB1018
Csa1G004260Silver-seed gourdcarcuB1062
Csa1G004260Watermelon (97103) v2cuwmbB013
Csa1G004260Watermelon (97103) v2cuwmbB078
Csa1G004260Watermelon (97103) v2cuwmbB090
Csa1G004260Wax gourdcuwgoB007
Csa1G004260Wax gourdcuwgoB059
Csa1G004260Wax gourdcuwgoB095
Csa1G004260Cucumber (Chinese Long) v2cucuB001
Csa1G004260Watermelon (97103) v1cuwmB094
Csa1G004260Cucumber (Gy14) v1cgycuB107
Csa1G004260Cucumber (Gy14) v1cgycuB299
Csa1G004260Cucumber (Gy14) v1cgycuB475
Csa1G004260Cucurbita maxima (Rimu)cmacuB048
Csa1G004260Cucurbita maxima (Rimu)cmacuB086
Csa1G004260Cucurbita maxima (Rimu)cmacuB209
Csa1G004260Cucurbita maxima (Rimu)cmacuB402
Csa1G004260Cucurbita moschata (Rifu)cmocuB076
Csa1G004260Cucurbita moschata (Rifu)cmocuB037
Csa1G004260Cucurbita moschata (Rifu)cmocuB194
Csa1G004260Cucurbita moschata (Rifu)cmocuB390
Csa1G004260Melon (DHL92) v3.5.1cumeB019
Csa1G004260Melon (DHL92) v3.5.1cumeB054
Csa1G004260Watermelon (Charleston Gray)cuwcgB002
Csa1G004260Watermelon (Charleston Gray)cuwcgB005
Csa1G004260Watermelon (Charleston Gray)cuwcgB026
Csa1G004260Watermelon (Charleston Gray)cuwcgB081
Csa1G004260Watermelon (97103) v1cuwmB005
Csa1G004260Watermelon (97103) v1cuwmB002