Csa1G004070 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G004070
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 620814 .. 621020 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCCTGAATTTTGGATATCAGCCAATTCGAAGTTCGAACCTTAAGGCCCTGACCCATTCGTATTGGGCCTTGAAGCCCATAATCATTCAAACCGACCGAATAGTTTCATTTCAATTTGTTCTCATCTCTAAATATGAACCCTTCTTCTTCGTCTTCGCGCTGTGGATCTTGAATAACTCGAACCGGAATAGTCAGAAACTCTGA

mRNA sequence

ATGGGCCTGAATTTTGGATATCAGCCAATTCGAAGTTCGAACCTTAAGGCCCTGACCCATTCGTATTGGGCCTTGAAGCCCATAATCATTCAAACCGACCGAATAGTTTCATTTCAATTTGTTCTCATCTCTAAATATGAACCCTTCTTCTTCGTCTTCGCGCTGTGGATCTTGAATAACTCGAACCGGAATAGTCAGAAACTCTGA

Coding sequence (CDS)

ATGGGCCTGAATTTTGGATATCAGCCAATTCGAAGTTCGAACCTTAAGGCCCTGACCCATTCGTATTGGGCCTTGAAGCCCATAATCATTCAAACCGACCGAATAGTTTCATTTCAATTTGTTCTCATCTCTAAATATGAACCCTTCTTCTTCGTCTTCGCGCTGTGGATCTTGAATAACTCGAACCGGAATAGTCAGAAACTCTGA

Protein sequence

MGLNFGYQPIRSSNLKALTHSYWALKPIIIQTDRIVSFQFVLISKYEPFFFVFALWILNNSNRNSQKL*
Homology
[Close]
BLAST of Csa1G004070 vs. TrEMBL
Match: A0A0A0LU73_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G004070 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 4.2e-31
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 1  MGLNFGYQPIRSSNLKALTHSYWALKPIIIQTDRIVSFQFVLISKYEPFFFVFALWILNN 60
          MGLNFGYQPIRSSNLKALTHSYWALKPIIIQTDRIVSFQFVLISKYEPFFFVFALWILNN
Sbjct: 1  MGLNFGYQPIRSSNLKALTHSYWALKPIIIQTDRIVSFQFVLISKYEPFFFVFALWILNN 60

Query: 61 SNRNSQKL 69
          SNRNSQKL
Sbjct: 61 SNRNSQKL 68

[Close]
BLAST of Csa1G004070 vs. NCBI nr
Match: gi|700208445|gb|KGN63541.1| (hypothetical protein Csa_1G004070 [Cucumis sativus])

HSP 1 Score: 141.4 bits (355), Expect = 6.1e-31
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 1  MGLNFGYQPIRSSNLKALTHSYWALKPIIIQTDRIVSFQFVLISKYEPFFFVFALWILNN 60
          MGLNFGYQPIRSSNLKALTHSYWALKPIIIQTDRIVSFQFVLISKYEPFFFVFALWILNN
Sbjct: 1  MGLNFGYQPIRSSNLKALTHSYWALKPIIIQTDRIVSFQFVLISKYEPFFFVFALWILNN 60

Query: 61 SNRNSQKL 69
          SNRNSQKL
Sbjct: 61 SNRNSQKL 68

The following BLAST results are available for this feature:
BLAST of Csa1G004070 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LU73_CUCSA4.2e-31100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G004070 PE=4 SV=1[more]
BLAST of Csa1G004070 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208445|gb|KGN63541.1|6.1e-31100.00hypothetical protein Csa_1G004070 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G004070.1Csa1G004070.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G004070Cucurbita pepo (Zucchini)cpecuB361
Csa1G004070Cucurbita pepo (Zucchini)cpecuB653
Csa1G004070Bottle gourd (USVL1VR-Ls)culsiB070
Csa1G004070Bottle gourd (USVL1VR-Ls)culsiB035
Csa1G004070Bottle gourd (USVL1VR-Ls)culsiB045
Csa1G004070Cucumber (Gy14) v2cgybcuB001
Csa1G004070Cucumber (Gy14) v2cgybcuB011
Csa1G004070Cucumber (Gy14) v2cgybcuB098
Csa1G004070Melon (DHL92) v3.6.1cumedB014
Csa1G004070Melon (DHL92) v3.6.1cumedB046
Csa1G004070Silver-seed gourdcarcuB0391
Csa1G004070Silver-seed gourdcarcuB0394
Csa1G004070Silver-seed gourdcarcuB1062
Csa1G004070Watermelon (97103) v2cuwmbB078
Csa1G004070Watermelon (97103) v2cuwmbB090
Csa1G004070Wax gourdcuwgoB007
Csa1G004070Wax gourdcuwgoB059
Csa1G004070Wax gourdcuwgoB095
Csa1G004070Watermelon (97103) v1cuwmB094
Csa1G004070Cucumber (Gy14) v1cgycuB107
Csa1G004070Cucumber (Gy14) v1cgycuB299
Csa1G004070Cucumber (Gy14) v1cgycuB475
Csa1G004070Cucurbita maxima (Rimu)cmacuB048
Csa1G004070Cucurbita maxima (Rimu)cmacuB086
Csa1G004070Cucurbita maxima (Rimu)cmacuB113
Csa1G004070Cucurbita moschata (Rifu)cmocuB076
Csa1G004070Cucurbita moschata (Rifu)cmocuB037
Csa1G004070Cucurbita moschata (Rifu)cmocuB085
Csa1G004070Cucurbita moschata (Rifu)cmocuB223
Csa1G004070Cucurbita moschata (Rifu)cmocuB390
Csa1G004070Melon (DHL92) v3.5.1cumeB019
Csa1G004070Melon (DHL92) v3.5.1cumeB054
Csa1G004070Watermelon (Charleston Gray)cuwcgB002
Csa1G004070Watermelon (Charleston Gray)cuwcgB005
Csa1G004070Watermelon (Charleston Gray)cuwcgB081
Csa1G004070Watermelon (97103) v1cuwmB005
Csa1G004070Watermelon (97103) v1cuwmB002