Csa1G001370 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G001370
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 202756 .. 203425 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTTTGTGGTGACCGGAGCAGCTTGCTTGGTCCATAGCTATCCCCTTGCTGTGCGTCTCACCATCAGCTCACATGAAACTCAGAGACCGTACGGGTCGGCAGAGGTGTGCTGTCTTTTGGAGGCTGAAGCTGACTACTCCATCGATTGGAAACTGGTTTTTGACATCTCTGGCGCTTCCAACTTTGTTGCTCAGGTTTTCCAACAATTCCTTCCTTTTGTTGTAAAGTTAAGTCATAACTGTGATTTTAATTTTTGGATTTAATTAAAGTATACCTCGTATCACTTAATTATATACACATCACACTCAATATTTAGAGATTGATTTTCTGGTGTGCTATCATGATTACTTTTGTTTACTGCTCTTTTATCCTTAATCTTGCAATAATGTCTCAGGTGACTAAGTTTAAATGTAGTGAGTTCGTGGTTGGTTGGACTATGCGTGAACCACAGTGTCGTTGATGGGGTCGGGGCTATGGACGAGTTTGTGAATTTGTGGGGTGAAACTTCGGGGAGCTTGCCTTTTTACCGTTTCTTGATAGGAACATTATCTAAGCTCAAGACCTAAGGAGGGCCGCACAGCAGTACGATTGCGTCCTGATAAAGCAAAGCTCCTATTAGCAGGGATTTTGGGTGGGGGGACAACCCCGTGTTTTCAATACCGGTGA

mRNA sequence

ATGACTTTTGTGGTGACCGGAGCAGCTTGCTTGGTCCATAGCTATCCCCTTGCTGTGCGTCTCACCATCAGCTCACATGAAACTCAGAGACCGTACGGGTCGGCAGAGGTGTGCTGTCTTTTGGAGGCTGAAGCTGACTACTCCATCGATTGGAAACTGGTTTTTGACATCTCTGGCGCTTCCAACTTTGTTGCTCAGGAACATTATCTAAGCTCAAGACCTAAGGAGGGCCGCACAGCAGTACGATTGCGTCCTGATAAAGCAAAGCTCCTATTAGCAGGGATTTTGGGTGGGGGGACAACCCCGTGTTTTCAATACCGGTGA

Coding sequence (CDS)

ATGACTTTTGTGGTGACCGGAGCAGCTTGCTTGGTCCATAGCTATCCCCTTGCTGTGCGTCTCACCATCAGCTCACATGAAACTCAGAGACCGTACGGGTCGGCAGAGGTGTGCTGTCTTTTGGAGGCTGAAGCTGACTACTCCATCGATTGGAAACTGGTTTTTGACATCTCTGGCGCTTCCAACTTTGTTGCTCAGGAACATTATCTAAGCTCAAGACCTAAGGAGGGCCGCACAGCAGTACGATTGCGTCCTGATAAAGCAAAGCTCCTATTAGCAGGGATTTTGGGTGGGGGGACAACCCCGTGTTTTCAATACCGGTGA

Protein sequence

MTFVVTGAACLVHSYPLAVRLTISSHETQRPYGSAEVCCLLEAEADYSIDWKLVFDISGASNFVAQEHYLSSRPKEGRTAVRLRPDKAKLLLAGILGGGTTPCFQYR*
Homology
[Close]
BLAST of Csa1G001370 vs. TrEMBL
Match: A0A0A0LNI6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G001370 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.5e-54
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 

Query: 1   MTFVVTGAACLVHSYPLAVRLTISSHETQRPYGSAEVCCLLEAEADYSIDWKLVFDISGA 60
           MTFVVTGAACLVHSYPLAVRLTISSHETQRPYGSAEVCCLLEAEADYSIDWKLVFDISGA
Sbjct: 1   MTFVVTGAACLVHSYPLAVRLTISSHETQRPYGSAEVCCLLEAEADYSIDWKLVFDISGA 60

Query: 61  SNFVAQEHYLSSRPKEGRTAVRLRPDKAKLLLAGILGGGTTPCFQYR 108
           SNFVAQEHYLSSRPKEGRTAVRLRPDKAKLLLAGILGGGTTPCFQYR
Sbjct: 61  SNFVAQEHYLSSRPKEGRTAVRLRPDKAKLLLAGILGGGTTPCFQYR 107

[Close]
BLAST of Csa1G001370 vs. NCBI nr
Match: gi|700208369|gb|KGN63465.1| (hypothetical protein Csa_1G001370 [Cucumis sativus])

HSP 1 Score: 219.9 bits (559), Expect = 2.1e-54
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 

Query: 1   MTFVVTGAACLVHSYPLAVRLTISSHETQRPYGSAEVCCLLEAEADYSIDWKLVFDISGA 60
           MTFVVTGAACLVHSYPLAVRLTISSHETQRPYGSAEVCCLLEAEADYSIDWKLVFDISGA
Sbjct: 1   MTFVVTGAACLVHSYPLAVRLTISSHETQRPYGSAEVCCLLEAEADYSIDWKLVFDISGA 60

Query: 61  SNFVAQEHYLSSRPKEGRTAVRLRPDKAKLLLAGILGGGTTPCFQYR 108
           SNFVAQEHYLSSRPKEGRTAVRLRPDKAKLLLAGILGGGTTPCFQYR
Sbjct: 61  SNFVAQEHYLSSRPKEGRTAVRLRPDKAKLLLAGILGGGTTPCFQYR 107

The following BLAST results are available for this feature:
BLAST of Csa1G001370 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNI6_CUCSA1.5e-54100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G001370 PE=4 SV=1[more]
BLAST of Csa1G001370 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208369|gb|KGN63465.1|2.1e-54100.00hypothetical protein Csa_1G001370 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G001370.1Csa1G001370.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G001370CSPI01G00350Wild cucumber (PI 183967)cpicuB000
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G001370Watermelon (97103) v2cuwmbB050
Csa1G001370Watermelon (97103) v2cuwmbB078
Csa1G001370Wax gourdcuwgoB061
Csa1G001370Wax gourdcuwgoB079
Csa1G001370Cucumber (Chinese Long) v2cucuB002
Csa1G001370Cucumber (Chinese Long) v2cucuB014
Csa1G001370Watermelon (97103) v1cuwmB094
Csa1G001370Cucumber (Gy14) v1cgycuB224
Csa1G001370Cucurbita maxima (Rimu)cmacuB048
Csa1G001370Cucurbita maxima (Rimu)cmacuB086
Csa1G001370Cucurbita maxima (Rimu)cmacuB225
Csa1G001370Cucurbita moschata (Rifu)cmocuB076
Csa1G001370Cucurbita moschata (Rifu)cmocuB037
Csa1G001370Cucurbita moschata (Rifu)cmocuB211
Csa1G001370Cucurbita moschata (Rifu)cmocuB393
Csa1G001370Melon (DHL92) v3.5.1cumeB022
Csa1G001370Melon (DHL92) v3.5.1cumeB054
Csa1G001370Melon (DHL92) v3.5.1cumeB078
Csa1G001370Watermelon (Charleston Gray)cuwcgB052
Csa1G001370Watermelon (Charleston Gray)cuwcgB065
Csa1G001370Watermelon (Charleston Gray)cuwcgB081
Csa1G001370Watermelon (97103) v1cuwmB028
Csa1G001370Cucurbita pepo (Zucchini)cpecuB361
Csa1G001370Cucurbita pepo (Zucchini)cpecuB513
Csa1G001370Cucurbita pepo (Zucchini)cpecuB653
Csa1G001370Bottle gourd (USVL1VR-Ls)culsiB070
Csa1G001370Bottle gourd (USVL1VR-Ls)culsiB041
Csa1G001370Cucumber (Gy14) v2cgybcuB001
Csa1G001370Cucumber (Gy14) v2cgybcuB014
Csa1G001370Cucumber (Gy14) v2cgybcuB096
Csa1G001370Melon (DHL92) v3.6.1cumedB018
Csa1G001370Melon (DHL92) v3.6.1cumedB046
Csa1G001370Silver-seed gourdcarcuB0391
Csa1G001370Silver-seed gourdcarcuB0636