CsGy7G016470 (gene) Cucumber (Gy14) v2

Overview
NameCsGy7G016470
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptiontranscription initiation factor TFIID subunit 13
LocationChr7 : 20059818 .. 20062921 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCAAATCACCAATGTAGTTTTTTATTTTCGGGTTTGAAAAAGTTTATAATTTTAGAGAAAAATAGAAAGGAATTTAAAATATGTTAGAAGATTTCTCCAAACTTCTAATTAAGGATGGAACATTCATTTGAAGAACAAATGAACTAAAGAGATTGTACAACTTCTAAACCAAATAATAATGCTAACCTTCATACCAATAAGGCTAAACACAAATTTACTCGGAGAGATAAAGAATCATAAGATAGATATTAGAAATTGTACTCTACACCCATAAACAAATCAATAGTAAATCAAGTTTATTGTTGAAATCTCGTGTGTACTCTTGGCTTGGCGCTCGGATATTGTCTGCGTTGTAGGCTTTTGGTGGGAATCACCGCTCCGATTCTCCATCTCCTGGTGAGAATCATGGCCCCTTGCTTAGCTGTTTTAAACAACTACTCCCTTTCTTTTCTCTTTTTTGGCTTGTGATTATTATTCCATTAATTGGACTCGATTATATCAATTTTATTTCACTTTTCCGAGGCTCCACTTTTGAAATTCCCCCCTTTCTGTTTCAATGTTTGCTTGACATTGTCATTAGGGTTTATCTTCTTTCCATCGAGTTACTGATAAAGTTCCCTTTTGGGGATATTTCAATTTAGTGGGTCGATGATTCTAGATGTTTGATATTGTTTAATTTGATTATTTTACCTTCACGTTTAGATTGTTTTCATTTTCATTGCTGTGGGAAGATAGTGAAGATGAACAATTCATCTGCTGGGCCGTCCTCAAAGCAAAGAACTGGATCGTCTCAGCCCTCTGAAACCTCTTTTAAGCGCAAAAGAGGGGTTTTTCAGAAAGAATGTAACTGGTTTCCCTTTTCTTTCTTTTTTTTTTTCTTTTTCTTCTTCTTCATCTCAAGTTTGTATGTTGAAATGCAATTATGTGACCCTTCCTCTTTTCAGTGCAGCACATGATGTATGGTTTTGGAGATGACCCTAATGTAAGTGAAATTATCATATATTACTTTTGTTTTAACTTGTATAGAAAGGATTCTTATGTATGTTTCCATGGAAATTCAAACGTGAAATTTTGTTTTTTATGCTTTTTTGGGTTTTTCTGATCTTCCTCTTCCATGGCTTTGTATGTTTTGTCGAGAGAGCTTTGAAAGTGACTGTTGTTTAGTAGATGAAATTTTGATTGTTTAGCTTTTCTTTGAAGATATTTGGAATGATCAGTTGCTCATAAACTCGTCATAGGAACAGATATCTTCACGATTTCTGATAGCTCAAATTTTAATGTAAGCTGTCACCCCATCCCTTAAGTAAAATGTTGCCTGCCTGAAGAAAATTGGAAAGAAGTAATCAATATTCCTTGTATTTTCTAAAATTGAGCTCAAGTTTCCCATCCCGTGAATGGCAGAATAGAATAATGGTTTTGAAATCCTGAAGCTTTGTATAGTGGCTGGGTTTTACGAGTCTTAATGTTAAGTAAGAGCCATGCTAAGAATTTAATTGGCTGCCTCTCTCTTTACTCATATGTTCTTAGCAGATCAGAAGTACAATGCAACCGTGGAAAAGTTCTAGTCTTTGTGTTCTTGTTCTCATTTAGAAATAAGAAATATCTATTCATGAGTTTTTGTTTGCTGCACTGCAGCCCCTTCCAGAGTCCGTAGCACTTATGGAGGACATAGTTGTGGAGTACATTACTGAACTGGTAAGAATTTCTTTGCAAGTATCATAAACATTCCTTGCTAAACCAATGTTGTATGGTTAGGATTATCTGAAATATATGTTCTTTGTAGGTGTATAAAGCTCAGGAAATTGGATCAAAGAGAGGAAAGCTATCGGTGGAAGACTTTTTGTATTTAATGCGAAAGGTACATTACTATATGACATAATCTCTGTCTGTATGTTTTCTTATCAATGAATGAACTTAAGTTCTCTCAATATTTGGCTATGAAACAACTACAAGGCATCCTTAATCTTTAGACATTGGACATATTAAAATTTTCTTACTGCATTTTGTAAGCACAGATTTCTTCTGTACCAGCTTTTGTTATAATCTTCATTCCAATGTGATTTCGGGGATTTACTGATTGCATAAACAGATCAGCTCAATAATTTTGAACTAAAATTAGGTGCCTCAAGCGCCCTTTCCTACAATCATTTAACTAAAGATTTGATGTCAAAACTTCTAAACCTATATGATTTTCCACATTTTAGGACCCACGCAAACTGAACCGTTCAACTGAACTGTTGTCGATGAACGAAGAGCTGAAACAAGCGAGGAGAGCTTTTGAGATAGATGAAGATAAGCTGAAAAAGGCTTTTGAAGAGGAAGACAAGATGGATTAGTAATCATTGGAAGATACTTTGGAGGTCATATGTCATTGTTGCTGCACAGACAAAGCATGTCTCATTATGGTTCCTTGTGATACTAAAAGACAACCGACGGGTCTTAGAACTCTCTGTCTTTGTCGAGCAAAGCAAGGTATATTTTGTTTTTTCTGCTTAATGGCAATCAATGTACCTTGATCCCCTTCCTTTCCGCCCTAACCTACTTATAAAAGGTAGGGGCTTCCCTATTGTACACGCACCCCTTTTGGAATTAATGAAATGAACGCATCCTTTAAACGTTTGTAGCCTCAGTATATGCTTCATTCAATATGTCAAAGAGTTTCTTGCCAGTGCCTATCTAAGAGCAAACAACTTATGTGGCTGTCTAATTGAGATTAAATCTTATTGTTTTTTAGAACGTTTTTTCGAAAGCCATCAAAGAGTATAAGTTACTCTCGTGTATAACTTAGTTGGTGAATTAAATTTGTAATTTGTTTTTGACATTGTAATCTTAAAAGGCTATTAAAATGTTCATCTTTTTTCACGTGGACTCGACATCCACCTCGAGCAAGGTTTATTTAGATAAGTGAAATTATCTTTTTTTTAATACAACAATCGTAGAGATAAATGATCGAACATTTTTTACCTCTACGATGAAAGAACATTTTTTACCTCTATGATGGAAGATCGTGTTATTTACCATAACGATAAGTAAGACTATAATAAAGGAAATGTGACAATTTTTTTGGTTTAGTTACCAAAAATTGCCCATCACTAACACGTGG

mRNA sequence

CTCAAATCACCAATGTAGTTTTTTATTTTCGGGTTTGAAAAAGTTTATAATTTTAGAGAAAAATAGAAAGGAATTTAAAATATGTTAGAAGATTTCTCCAAACTTCTAATTAAGGATGGAACATTCATTTGAAGAACAAATGAACTAAAGAGATTGTACAACTTCTAAACCAAATAATAATGCTAACCTTCATACCAATAAGGCTAAACACAAATTTACTCGGAGAGATAAAGAATCATAAGATAGATATTAGAAATTGTACTCTACACCCATAAACAAATCAATAGTAAATCAAGTTTATTGTTGAAATCTCGTGTGTACTCTTGGCTTGGCGCTCGGATATTGTCTGCGTTGTAGGCTTTTGGTGGGAATCACCGCTCCGATTCTCCATCTCCTGATTGTTTTCATTTTCATTGCTGTGGGAAGATAGTGAAGATGAACAATTCATCTGCTGGGCCGTCCTCAAAGCAAAGAACTGGATCGTCTCAGCCCTCTGAAACCTCTTTTAAGCGCAAAAGAGGGGTTTTTCAGAAAGAATTGCAGCACATGATGTATGGTTTTGGAGATGACCCTAATCCCCTTCCAGAGTCCGTAGCACTTATGGAGGACATAGTTGTGGAGTACATTACTGAACTGGTGTATAAAGCTCAGGAAATTGGATCAAAGAGAGGAAAGCTATCGGTGGAAGACTTTTTGTATTTAATGCGAAAGGACCCACGCAAACTGAACCGTTCAACTGAACTGTTGTCGATGAACGAAGAGCTGAAACAAGCGAGGAGAGCTTTTGAGATAGATGAAGATAAGCTGAAAAAGGCTTTTGAAGAGGAAGACAAGATGGATTAGTAATCATTGGAAGATACTTTGGAGGTCATATGTCATTGTTGCTGCACAGACAAAGCATGTCTCATTATGGTTCCTTGTGATACTAAAAGACAACCGACGGGTCTTAGAACTCTCTGTCTTTGTCGAGCAAAGCAAGGTATATTTTGTTTTTTCTGCTTAATGGCAATCAATGTACCTTGATCCCCTTCCTTTCCGCCCTAACCTACTTATAAAAGGTAGGGGCTTCCCTATTGTACACGCACCCCTTTTGGAATTAATGAAATGAACGCATCCTTTAAACGTTTGTAGCCTCAGTATATGCTTCATTCAATATGTCAAAGAGTTTCTTGCCAGTGCCTATCTAAGAGCAAACAACTTATGTGGCTGTCTAATTGAGATTAAATCTTATTGTTTTTTAGAACGTTTTTTCGAAAGCCATCAAAGAGTATAAGTTACTCTCGTGTATAACTTAGTTGGTGAATTAAATTTGTAATTTGTTTTTGACATTGTAATCTTAAAAGGCTATTAAAATGTTCATCTTTTTTCACGTGGACTCGACATCCACCTCGAGCAAGGTTTATTTAGATAAGTGAAATTATCTTTTTTTTAATACAACAATCGTAGAGATAAATGATCGAACATTTTTTACCTCTACGATGAAAGAACATTTTTTACCTCTATGATGGAAGATCGTGTTACCAAAAATTGCCCATCACTAACACGTGG

Coding sequence (CDS)

ATGAACAATTCATCTGCTGGGCCGTCCTCAAAGCAAAGAACTGGATCGTCTCAGCCCTCTGAAACCTCTTTTAAGCGCAAAAGAGGGGTTTTTCAGAAAGAATTGCAGCACATGATGTATGGTTTTGGAGATGACCCTAATCCCCTTCCAGAGTCCGTAGCACTTATGGAGGACATAGTTGTGGAGTACATTACTGAACTGGTGTATAAAGCTCAGGAAATTGGATCAAAGAGAGGAAAGCTATCGGTGGAAGACTTTTTGTATTTAATGCGAAAGGACCCACGCAAACTGAACCGTTCAACTGAACTGTTGTCGATGAACGAAGAGCTGAAACAAGCGAGGAGAGCTTTTGAGATAGATGAAGATAAGCTGAAAAAGGCTTTTGAAGAGGAAGACAAGATGGATTAG

Protein sequence

MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
Homology
[Close]
BLAST of CsGy7G016470 vs. NCBI nr
Match: XP_004136002.1 (PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis sativus] >KGN45001.1 hypothetical protein Csa_7G407540 [Cucumis sativus])

HSP 1 Score: 256.5 bits (654), Expect = 4.9e-65
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 1   MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60
           MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 121 EDKLKKAFEEEDKMD 136
           EDKLKKAFEEEDKMD
Sbjct: 121 EDKLKKAFEEEDKMD 135

[Close]
BLAST of CsGy7G016470 vs. NCBI nr
Match: XP_008451497.1 (PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_008451498.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_008451499.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_008451500.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_008451501.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_008451502.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_008451503.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_016901114.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_016901115.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_016901116.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo])

HSP 1 Score: 253.4 bits (646), Expect = 4.2e-64
Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 0 

Query: 1   MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60
           MNNSSAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 121 EDKLKKAFEEEDKMD 136
           EDKLKKAFEEEDKMD
Sbjct: 121 EDKLKKAFEEEDKMD 135

[Close]
BLAST of CsGy7G016470 vs. NCBI nr
Match: XP_022144527.1 (transcription initiation factor TFIID subunit 13 [Momordica charantia] >XP_022144536.1 transcription initiation factor TFIID subunit 13 [Momordica charantia])

HSP 1 Score: 253.4 bits (646), Expect = 4.2e-64
Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 0 

Query: 1   MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60
           MNN SAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MNNPSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 121 EDKLKKAFEEEDKMD 136
           EDKLKKAFEEEDK+D
Sbjct: 121 EDKLKKAFEEEDKLD 135

[Close]
BLAST of CsGy7G016470 vs. NCBI nr
Match: XP_022991537.1 (transcription initiation factor TFIID subunit 13 [Cucurbita maxima] >XP_022991538.1 transcription initiation factor TFIID subunit 13 [Cucurbita maxima])

HSP 1 Score: 244.2 bits (622), Expect = 2.5e-61
Identity = 129/135 (95.56%), Postives = 132/135 (97.78%), Query Frame = 0 

Query: 1   MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60
           MNN SAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDD NPLPESVALMEDIV
Sbjct: 1   MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 121 EDKLKKAFEEEDKMD 136
           EDKLKKAFEE++K+D
Sbjct: 121 EDKLKKAFEEDEKVD 135

[Close]
BLAST of CsGy7G016470 vs. NCBI nr
Match: XP_023547584.1 (transcription initiation factor TFIID subunit 13 [Cucurbita pepo subsp. pepo] >XP_023547585.1 transcription initiation factor TFIID subunit 13 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 243.0 bits (619), Expect = 5.7e-61
Identity = 128/135 (94.81%), Postives = 132/135 (97.78%), Query Frame = 0 

Query: 1   MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60
           MNN SAG SSKQRTG+SQPSETSFKRKRGVFQKELQHMMYGFGDD NPLPESVALMEDIV
Sbjct: 1   MNNPSAGSSSKQRTGASQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 121 EDKLKKAFEEEDKMD 136
           EDKLKKAFEE++K+D
Sbjct: 121 EDKLKKAFEEDEKVD 135

[Close]
BLAST of CsGy7G016470 vs. TAIR10
Match: AT1G02680.1 (TBP-associated factor 13)

HSP 1 Score: 148.7 bits (374), Expect = 2.6e-36
Identity = 72/99 (72.73%), Postives = 89/99 (89.90%), Query Frame = 0 

Query: 26  RKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVED 85
           +++ +FQKELQHMMYGFGD+ NPLPESVAL+EDIVVEY+T+L +KAQEIGSKRG+L V+D
Sbjct: 26  KRKTLFQKELQHMMYGFGDEQNPLPESVALVEDIVVEYVTDLTHKAQEIGSKRGRLLVDD 85

Query: 86  FLYLMRKDPRKLNRSTELLSMNEELKQARRAFEIDEDKL 125
           FLYL+RKD  KLNR  ELL+M EELKQAR+AF++DE +L
Sbjct: 86  FLYLIRKDLPKLNRCRELLAMQEELKQARKAFDVDEKEL 124

[Close]
BLAST of CsGy7G016470 vs. Swiss-Prot
Match: sp|Q6NQH4|TAF13_ARATH (Transcription initiation factor TFIID subunit 13 OS=Arabidopsis thaliana OX=3702 GN=TAF13 PE=1 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 4.8e-35
Identity = 72/99 (72.73%), Postives = 89/99 (89.90%), Query Frame = 0 

Query: 26  RKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVED 85
           +++ +FQKELQHMMYGFGD+ NPLPESVAL+EDIVVEY+T+L +KAQEIGSKRG+L V+D
Sbjct: 26  KRKTLFQKELQHMMYGFGDEQNPLPESVALVEDIVVEYVTDLTHKAQEIGSKRGRLLVDD 85

Query: 86  FLYLMRKDPRKLNRSTELLSMNEELKQARRAFEIDEDKL 125
           FLYL+RKD  KLNR  ELL+M EELKQAR+AF++DE +L
Sbjct: 86  FLYLIRKDLPKLNRCRELLAMQEELKQARKAFDVDEKEL 124

[Close]
BLAST of CsGy7G016470 vs. Swiss-Prot
Match: sp|Q148M7|TAF13_BOVIN (Transcription initiation factor TFIID subunit 13 OS=Bos taurus OX=9913 GN=TAF13 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.8e-24
Identity = 56/94 (59.57%), Postives = 77/94 (81.91%), Query Frame = 0 

Query: 25  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVE 84
           KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VE
Sbjct: 27  KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVE 86

Query: 85  DFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE 119
           D ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Sbjct: 87  DIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118

[Close]
BLAST of CsGy7G016470 vs. Swiss-Prot
Match: sp|Q15543|TAF13_HUMAN (Transcription initiation factor TFIID subunit 13 OS=Homo sapiens OX=9606 GN=TAF13 PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.8e-24
Identity = 56/94 (59.57%), Postives = 77/94 (81.91%), Query Frame = 0 

Query: 25  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVE 84
           KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VE
Sbjct: 27  KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVE 86

Query: 85  DFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE 119
           D ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Sbjct: 87  DIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118

[Close]
BLAST of CsGy7G016470 vs. Swiss-Prot
Match: sp|P61216|TAF13_MOUSE (Transcription initiation factor TFIID subunit 13 OS=Mus musculus OX=10090 GN=Taf13 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.8e-24
Identity = 56/94 (59.57%), Postives = 77/94 (81.91%), Query Frame = 0 

Query: 25  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVE 84
           KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VE
Sbjct: 27  KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVE 86

Query: 85  DFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE 119
           D ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Sbjct: 87  DIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118

[Close]
BLAST of CsGy7G016470 vs. Swiss-Prot
Match: sp|Q5R9W6|TAF13_PONAB (Transcription initiation factor TFIID subunit 13 OS=Pongo abelii OX=9601 GN=TAF13 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.8e-24
Identity = 56/94 (59.57%), Postives = 77/94 (81.91%), Query Frame = 0 

Query: 25  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVE 84
           KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VE
Sbjct: 27  KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVE 86

Query: 85  DFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE 119
           D ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Sbjct: 87  DIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118

[Close]
BLAST of CsGy7G016470 vs. TrEMBL
Match: tr|A0A0A0KB69|A0A0A0KB69_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G407540 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 3.3e-65
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 1   MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60
           MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 121 EDKLKKAFEEEDKMD 136
           EDKLKKAFEEEDKMD
Sbjct: 121 EDKLKKAFEEEDKMD 135

[Close]
BLAST of CsGy7G016470 vs. TrEMBL
Match: tr|A0A1S3BRL0|A0A1S3BRL0_CUCME (transcription initiation factor TFIID subunit 13 OS=Cucumis melo OX=3656 GN=LOC103492769 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 2.8e-64
Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 0 

Query: 1   MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60
           MNNSSAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 121 EDKLKKAFEEEDKMD 136
           EDKLKKAFEEEDKMD
Sbjct: 121 EDKLKKAFEEEDKMD 135

[Close]
BLAST of CsGy7G016470 vs. TrEMBL
Match: tr|A0A0B2PQV7|A0A0B2PQV7_GLYSO (Transcription initiation factor TFIID subunit 13 OS=Glycine soja OX=3848 GN=glysoja_034326 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 9.2e-52
Identity = 111/135 (82.22%), Postives = 123/135 (91.11%), Query Frame = 0 

Query: 1   MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60
           M+NSSAG SSK RT SSQPSETS KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MSNSSAGTSSKPRTASSQPSETSSKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEY+TELV+KAQ+IGS+RGKLSVEDFLYL+RKD  KLNR TELLSMNEELKQAR+ FE D
Sbjct: 61  VEYVTELVHKAQDIGSQRGKLSVEDFLYLIRKDSPKLNRCTELLSMNEELKQARKVFESD 120

Query: 121 EDKLKKAFEEEDKMD 136
           E+KL+K FE +D ++
Sbjct: 121 EEKLRKVFEVDDSLE 135

[Close]
BLAST of CsGy7G016470 vs. TrEMBL
Match: tr|I1L7R2|I1L7R2_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100789657 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.2e-51
Identity = 111/135 (82.22%), Postives = 123/135 (91.11%), Query Frame = 0 

Query: 1   MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60
           M+NSSAG SSK RT SSQPSETS KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MSNSSAGTSSKPRTASSQPSETSSKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEY+TELV+KAQ+IGS+RGKLSVEDFLYL+RKD  KLNR TELLSMNEELKQAR+ FE D
Sbjct: 61  VEYVTELVHKAQDIGSQRGKLSVEDFLYLIRKDSPKLNRCTELLSMNEELKQARKVFESD 120

Query: 121 EDKLKKAFEEEDKMD 136
           E+KL+K FE +D ++
Sbjct: 121 EEKLRKVFEVDDSVE 135

[Close]
BLAST of CsGy7G016470 vs. TrEMBL
Match: tr|A0A0B2PL30|A0A0B2PL30_GLYSO (Transcription initiation factor TFIID subunit 13 OS=Glycine soja OX=3848 GN=glysoja_034338 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.2e-51
Identity = 111/135 (82.22%), Postives = 123/135 (91.11%), Query Frame = 0 

Query: 1   MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60
           M+NSSAG SSK RT SSQPSETS KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MSNSSAGTSSKPRTASSQPSETSSKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEY+TELV+KAQ+IGS+RGKLSVEDFLYL+RKD  KLNR TELLSMNEELKQAR+ FE D
Sbjct: 61  VEYVTELVHKAQDIGSQRGKLSVEDFLYLIRKDSPKLNRCTELLSMNEELKQARKVFESD 120

Query: 121 EDKLKKAFEEEDKMD 136
           E+KL+K FE +D ++
Sbjct: 121 EEKLRKVFEVDDSVE 135

The following BLAST results are available for this feature:
BLAST of CsGy7G016470 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004136002.14.9e-65100.00PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis sativus] >K... [more]
XP_008451497.14.2e-6499.26PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_0... [more]
XP_022144527.14.2e-6498.52transcription initiation factor TFIID subunit 13 [Momordica charantia] >XP_02214... [more]
XP_022991537.12.5e-6195.56transcription initiation factor TFIID subunit 13 [Cucurbita maxima] >XP_02299153... [more]
XP_023547584.15.7e-6194.81transcription initiation factor TFIID subunit 13 [Cucurbita pepo subsp. pepo] >X... [more]
BLAST of CsGy7G016470 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G02680.12.6e-3672.73TBP-associated factor 13[more]
BLAST of CsGy7G016470 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q6NQH4|TAF13_ARATH4.8e-3572.73Transcription initiation factor TFIID subunit 13 OS=Arabidopsis thaliana OX=3702... [more]
sp|Q148M7|TAF13_BOVIN3.8e-2459.57Transcription initiation factor TFIID subunit 13 OS=Bos taurus OX=9913 GN=TAF13 ... [more]
sp|Q15543|TAF13_HUMAN3.8e-2459.57Transcription initiation factor TFIID subunit 13 OS=Homo sapiens OX=9606 GN=TAF1... [more]
sp|P61216|TAF13_MOUSE3.8e-2459.57Transcription initiation factor TFIID subunit 13 OS=Mus musculus OX=10090 GN=Taf... [more]
sp|Q5R9W6|TAF13_PONAB3.8e-2459.57Transcription initiation factor TFIID subunit 13 OS=Pongo abelii OX=9601 GN=TAF1... [more]
BLAST of CsGy7G016470 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KB69|A0A0A0KB69_CUCSA3.3e-65100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G407540 PE=4 SV=1[more]
tr|A0A1S3BRL0|A0A1S3BRL0_CUCME2.8e-6499.26transcription initiation factor TFIID subunit 13 OS=Cucumis melo OX=3656 GN=LOC1... [more]
tr|A0A0B2PQV7|A0A0B2PQV7_GLYSO9.2e-5282.22Transcription initiation factor TFIID subunit 13 OS=Glycine soja OX=3848 GN=glys... [more]
tr|I1L7R2|I1L7R2_SOYBN1.2e-5182.22Uncharacterized protein OS=Glycine max OX=3847 GN=100789657 PE=4 SV=1[more]
tr|A0A0B2PL30|A0A0B2PL30_GLYSO1.2e-5182.22Transcription initiation factor TFIID subunit 13 OS=Glycine soja OX=3848 GN=glys... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006366transcription from RNA polymerase II promoter
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR003195TFIID_TAF13
IPR009072Histone-fold
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0009960 endosperm development
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
biological_process GO:0006413 translational initiation
biological_process GO:0006366 transcription from RNA polymerase II promoter
cellular_component GO:0005669 transcription factor TFIID complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0003712 transcription cofactor activity
molecular_function GO:0003743 translation initiation factor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy7G016470.1CsGy7G016470.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 103..130
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availablePANTHERPTHR11380:SF5TRANSCRIPTION INITIATION PROTEIN SPT3 HOMOLOGcoord: 9..129
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 30..74
e-value: 8.3E-25
score: 88.1
IPR009072Histone-foldSUPERFAMILYSSF47113Histone-foldcoord: 31..73
IPR003195Transcription initiation factor IID, subunit 13PFAMPF02269TFIID-18kDacoord: 30..118
e-value: 2.9E-31
score: 107.2
IPR003195Transcription initiation factor IID, subunit 13PANTHERPTHR11380TRANSCRIPTION INITIATION FACTOR TFIID/SUPT3-RELATEDcoord: 9..129
IPR003195Transcription initiation factor IID, subunit 13CDDcd07978TAF13coord: 28..118
e-value: 1.19398E-40
score: 131.884

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy7G016470Cla015126Watermelon (97103) v1cgybwmB530
CsGy7G016470Csa7G407540Cucumber (Chinese Long) v2cgybcuB323
CsGy7G016470MELO3C015937Melon (DHL92) v3.5.1cgybmeB470
CsGy7G016470ClCG09G005230Watermelon (Charleston Gray)cgybwcgB486
CsGy7G016470CSPI07G18020Wild cucumber (PI 183967)cgybcpiB331
CsGy7G016470CmaCh17G010430Cucurbita maxima (Rimu)cgybcmaB925
CsGy7G016470CmoCh17G010180Cucurbita moschata (Rifu)cgybcmoB909
CsGy7G016470Lsi02G024610Bottle gourd (USVL1VR-Ls)cgyblsiB472
CsGy7G016470Cp4.1LG12g06150Cucurbita pepo (Zucchini)cgybcpeB906
CsGy7G016470MELO3C015937.2Melon (DHL92) v3.6.1cgybmedB467
CsGy7G016470CsaV3_7G029840Cucumber (Chinese Long) v3cgybcucB347
CsGy7G016470Cla97C09G167700Watermelon (97103) v2cgybwmbB543
CsGy7G016470Bhi09G000796Wax gourdcgybwgoB660
CsGy7G016470Carg07134Silver-seed gourdcarcgybB0120
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy7G016470Cucumber (Gy14) v2cgybcgybB134
CsGy7G016470Cucurbita maxima (Rimu)cgybcmaB911
CsGy7G016470Cucurbita maxima (Rimu)cgybcmaB943
CsGy7G016470Cucurbita maxima (Rimu)cgybcmaB973
CsGy7G016470Cucurbita moschata (Rifu)cgybcmoB893
CsGy7G016470Cucurbita moschata (Rifu)cgybcmoB925
CsGy7G016470Cucurbita moschata (Rifu)cgybcmoB955
CsGy7G016470Cucurbita pepo (Zucchini)cgybcpeB931
CsGy7G016470Cucurbita pepo (Zucchini)cgybcpeB950
CsGy7G016470Cucumber (Chinese Long) v2cgybcuB314
CsGy7G016470Bottle gourd (USVL1VR-Ls)cgyblsiB483
CsGy7G016470Melon (DHL92) v3.5.1cgybmeB501
CsGy7G016470Melon (DHL92) v3.6.1cgybmedB497
CsGy7G016470Watermelon (Charleston Gray)cgybwcgB492
CsGy7G016470Watermelon (97103) v1cgybwmB537
CsGy7G016470Wild cucumber (PI 183967)cgybcpiB322
CsGy7G016470Silver-seed gourdcarcgybB0461
CsGy7G016470Silver-seed gourdcarcgybB0807
CsGy7G016470Cucumber (Chinese Long) v3cgybcucB336
CsGy7G016470Watermelon (97103) v2cgybwmbB490
CsGy7G016470Wax gourdcgybwgoB618