CsGy7G016340 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy7G016340
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Two-component response regulator
Location	Chr7 : 19967482 .. 19970060 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTGTTAACAGTAAGCTCATTCATGTTTCTCAAATTTGAATTAACCTTCAAATTACTAATTAATACAACTTCTCACATTCTAGTTATGAAAATTAGATAATTACAGTAACCCATTCTTATATTATTATGAAACGTCTTTGGAATGTTCGATAATATGTGTGGTTAAGCTAAGGAAGATAATTGATCCATTATTATTGATTTTGATTCAGATAGAAGCTTAGGAAGAGAAGAAAACTCAGCCGTCCCGACTGCCTCGATCAATATTGGAGAATTTGGTGAATCGTCCACCGGAGAATTGGGTGGTCGGTCCGTGGCAGAAAGTGGAGATCAAAACAATTCTTTTGATGCTGATGAGCCTTTACAGAGACAAGAAATTTTCCCTAGAAGGACACGTTTCATTTGGACTGATGAATACCATCGAATATTTGTTGAGGCTGTTGATCGTTTAACACTTCAGAGTAAGTGTTAAGTGTTAATTTTTGTTTATTTCAGAAGTCCTATTTTTAATTTTTTGATATTGGGTTTTTTTTATTATTGTTGTTGTTGTTTGATTAATGTAGGAGCTGTTCCGAGGAAAATTTTAGAATATATGATAAATTGTGGAGTTCAAAACATCACTAGAGCAATAGTTGCCAGTCATCTACAGGTAATATACTTATCATATCATGTTATATATATAATATATATATTTTGGGACAATGATATTGTATACTCCTAATTTGTTGGAAGGTTAATTTATATTTTGTTTTATAACTATTAAAAACAATTACTTAAATTATGGAACAGTTTTAATATTATATTCTAAGTTTATAAATCTAATCTTGAATTAATTTTAATAATATATAAAATAAAGGAATAAATGCACAAATTAATTTTTATAACAATAATACATGGGTTGCTATACATTGAAATAGCTTTATTTCTTTCCACAACTTACCAAACAAAGAAGGAATTGTATCCTATGGCCATTCACATATCCTTTTAACTTACCAAACACAGGGGTTCTATCCTGTAGCCATTCACCTATCCTTATTCTCATTCCTTCCATGGATGTGTCCCGTGCTAGGAAGCATTACTCCTCTTTTTATTCCAAATTCAAGAATACGACCGATACGATTGATTGGTCTATGTGCCTCTCTTATTACTTTTTTGTATTTCATGTTCCTGATGGATATATACATTTTGATCCTTCTACGGCCAAATCTCAAACTTTGGTGAGCCTTCACAGCCTTCCTTGTGAAAAATATCAATTTTTATTTGGATATAGACGATATATCTTTTTATTTTTCGTGATAGTTTCATTTTAGTTGGTTGGTCTGGTATGGAAAGTTATGGGAAAAAGTATATTACAATCCCCATGTTGTGCGGAGCTCAGAAGTTTTTCCTCTGCATGGGCGGCCTTGTGCAGTAATTTCCTCACAGATCGATCGTCTGTCGTCGTCTTAAAGTAGTCCTTGAGAAGCTTTCAGGAAGAGATGCAGTTTTGTGAGTAAGCATATCATTTCTGGTCCAACCTGCCCAAACCAACTAAGAAGAACCAAACCTAACAAACACATCTTTTTGTTTATTATGCTATATTTGAAAATGTCTCTATTTTAAATTTAAAATGTCATATCAATGTGTACTCTAATATGATAACAATAAATTACTCCTAGATTCTTAAACATATTCTTAAAAATTTTGAGAATTAAAATGGTACATTTTGAAACAAGAGGACACAATATTATATGGATTTTCTTATCTAATTTTCTTTTCTTTTCTTTTTTAACAGTTTGGAACTTATATCATTTTTAATTTCATTCCAGAAATATAGGTTGAATCTTAAAAAAGGTAATCTTGAGACTGATAAAGCATTGACGGTGCACTCACAATCAATCTCTTTCAACACGGCTAGAAGAAGAAATCAAGGAAAAAACATGAGAAATCAAGGAGAGAACTTGAGAAGTCAAGAAGAAAACCTGAGAAATCAAGAAGGGAACATGAGATATCAAGAAGGGAACATGAGATATCAAGAAGGGAACATGAGATATCAAGAAGGGAACATGAGATATCAAGAAGGGAACATGAGATATCAAGAAGGGAACATGAGATATCAAGAAGGGAACCTGAGATATCAAGAAGGGAACCTGAGATATCAAGAAGGGAACCTGAGATATCAAGAAGGAAACATGAGAAATCAAGCCTCGCAAGAAGATCGTTTCGTTCATCAAATGACACGGCAGCAGCGATGGCCTCTATTTGAATCTCTATCAAGACCAGGTTTAACGCAAGACAATATAATTCTTCCTCAATTTTTTCAGAAAAATGAACCTAACCATCTCCAAAATCTACCCAATCAATTCCCTGGATATGTTGATGGCAATAATAACTACAATGTTATTCCCTCTCCTAATCCAACTAGATATGCTGATGGCAATAATAATATCGATGTTATTGCCTCTGATCATCTTATCAATGATGGATTGAGTCATCATGTTTCAAATAATGATCCTCACCATCTCAAGATGTGGGGAGACCAACCAGTGCCTTATCAAGAATATAATGATGATATTATGAATATCAAACATAAACTCTAA

mRNA sequence

ATGCCTGTTAACAATAGAAGCTTAGGAAGAGAAGAAAACTCAGCCGTCCCGACTGCCTCGATCAATATTGGAGAATTTGGTGAATCGTCCACCGGAGAATTGGGTGGTCGGTCCGTGGCAGAAAGTGGAGATCAAAACAATTCTTTTGATGCTGATGAGCCTTTACAGAGACAAGAAATTTTCCCTAGAAGGACACGTTTCATTTGGACTGATGAATACCATCGAATATTTGTTGAGGCTGTTGATCGTTTAACACTTCAGAGAGCTGTTCCGAGGAAAATTTTAGAATATATGATAAATTGTGGAGTTCAAAACATCACTAGAGCAATAGTTGCCAGTCATCTACAGAAATATAGGTTGAATCTTAAAAAAGGTAATCTTGAGACTGATAAAGCATTGACGGTGCACTCACAATCAATCTCTTTCAACACGGCTAGAAGAAGAAATCAAGGAAAAAACATGAGAAATCAAGGAGAGAACTTGAGAAGTCAAGAAGAAAACCTGAGAAATCAAGAAGGGAACATGAGATATCAAGAAGGGAACATGAGATATCAAGAAGGGAACATGAGATATCAAGAAGGGAACATGAGATATCAAGAAGGGAACATGAGATATCAAGAAGGGAACATGAGATATCAAGAAGGGAACCTGAGATATCAAGAAGGGAACCTGAGATATCAAGAAGGGAACCTGAGATATCAAGAAGGAAACATGAGAAATCAAGCCTCGCAAGAAGATCGTTTCGTTCATCAAATGACACGGCAGCAGCGATGGCCTCTATTTGAATCTCTATCAAGACCAGGTTTAACGCAAGACAATATAATTCTTCCTCAATTTTTTCAGAAAAATGAACCTAACCATCTCCAAAATCTACCCAATCAATTCCCTGGATATGTTGATGGCAATAATAACTACAATGTTATTCCCTCTCCTAATCCAACTAGATATGCTGATGGCAATAATAATATCGATGTTATTGCCTCTGATCATCTTATCAATGATGGATTGAGTCATCATGTTTCAAATAATGATCCTCACCATCTCAAGATGTGGGGAGACCAACCAGTGCCTTATCAAGAATATAATGATGATATTATGAATATCAAACATAAACTCTAA

Coding sequence (CDS)

ATGCCTGTTAACAATAGAAGCTTAGGAAGAGAAGAAAACTCAGCCGTCCCGACTGCCTCGATCAATATTGGAGAATTTGGTGAATCGTCCACCGGAGAATTGGGTGGTCGGTCCGTGGCAGAAAGTGGAGATCAAAACAATTCTTTTGATGCTGATGAGCCTTTACAGAGACAAGAAATTTTCCCTAGAAGGACACGTTTCATTTGGACTGATGAATACCATCGAATATTTGTTGAGGCTGTTGATCGTTTAACACTTCAGAGAGCTGTTCCGAGGAAAATTTTAGAATATATGATAAATTGTGGAGTTCAAAACATCACTAGAGCAATAGTTGCCAGTCATCTACAGAAATATAGGTTGAATCTTAAAAAAGGTAATCTTGAGACTGATAAAGCATTGACGGTGCACTCACAATCAATCTCTTTCAACACGGCTAGAAGAAGAAATCAAGGAAAAAACATGAGAAATCAAGGAGAGAACTTGAGAAGTCAAGAAGAAAACCTGAGAAATCAAGAAGGGAACATGAGATATCAAGAAGGGAACATGAGATATCAAGAAGGGAACATGAGATATCAAGAAGGGAACATGAGATATCAAGAAGGGAACATGAGATATCAAGAAGGGAACATGAGATATCAAGAAGGGAACCTGAGATATCAAGAAGGGAACCTGAGATATCAAGAAGGGAACCTGAGATATCAAGAAGGAAACATGAGAAATCAAGCCTCGCAAGAAGATCGTTTCGTTCATCAAATGACACGGCAGCAGCGATGGCCTCTATTTGAATCTCTATCAAGACCAGGTTTAACGCAAGACAATATAATTCTTCCTCAATTTTTTCAGAAAAATGAACCTAACCATCTCCAAAATCTACCCAATCAATTCCCTGGATATGTTGATGGCAATAATAACTACAATGTTATTCCCTCTCCTAATCCAACTAGATATGCTGATGGCAATAATAATATCGATGTTATTGCCTCTGATCATCTTATCAATGATGGATTGAGTCATCATGTTTCAAATAATGATCCTCACCATCTCAAGATGTGGGGAGACCAACCAGTGCCTTATCAAGAATATAATGATGATATTATGAATATCAAACATAAACTCTAA

Protein sequence

MPVNNRSLGREENSAVPTASINIGEFGESSTGELGGRSVAESGDQNNSFDADEPLQRQEIFPRRTRFIWTDEYHRIFVEAVDRLTLQRAVPRKILEYMINCGVQNITRAIVASHLQKYRLNLKKGNLETDKALTVHSQSISFNTARRRNQGKNMRNQGENLRSQEENLRNQEGNMRYQEGNMRYQEGNMRYQEGNMRYQEGNMRYQEGNMRYQEGNLRYQEGNLRYQEGNLRYQEGNMRNQASQEDRFVHQMTRQQRWPLFESLSRPGLTQDNIILPQFFQKNEPNHLQNLPNQFPGYVDGNNNYNVIPSPNPTRYADGNNNIDVIASDHLINDGLSHHVSNNDPHHLKMWGDQPVPYQEYNDDIMNIKHKL

Homology

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BLAST of CsGy7G016340 vs. NCBI nr
Match: KGN44986.1 (hypothetical protein Csa_7G405920 [Cucumis sativus])

HSP 1 Score: 402.5 bits (1033), Expect = 1.5e-108
Identity = 372/618 (60.19%), Postives = 372/618 (60.19%), Query Frame = 0


Query: 1   MPVNNRSLGREENSAVPTASINIGEFGESSTGELGGRSVAESGDQNNSFDADEPLQRQEI 60
           MPVNNRSLGREENSAVPTASINIGEFGESSTGELGGRSVAESGDQNNSFDADEPLQRQEI
Sbjct: 21  MPVNNRSLGREENSAVPTASINIGEFGESSTGELGGRSVAESGDQNNSFDADEPLQRQEI 80

Query: 61  FPRRTRFIWTDEYHRIFVEAVDRLTLQRAVPRKILEYMINCGVQNITRAIVASHLQ---- 120
           FPRRTRFIWTDEYHRIFVEAVDRLTLQRAVPRKILEYMINCGVQNITRAIVASHLQ    
Sbjct: 81  FPRRTRFIWTDEYHRIFVEAVDRLTLQRAVPRKILEYMINCGVQNITRAIVASHLQGFYP 140

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 141 VAIHLSLFSFLPWMCPVLGNITPLFIPNSGRQHSLVYVPLLYFFVFHVPDGYIHFDPSTA 200

Query: 181 ------------------------------------------KYRLNLKKGNLETDKALT 240
                                                     KYRLNLKKGNLETDKALT
Sbjct: 201 KSQTLFHFSWLVWYGKLWEKVYYNPHVVRSSEVFPLHGRPCAKYRLNLKKGNLETDKALT 260

Query: 241 VHSQSISFNTARRRNQGK------------------------------------------ 300
           VHSQSISFNTARRRNQGK                                          
Sbjct: 261 VHSQSISFNTARRRNQGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 320

Query: 301 ------------------------------------------------------------ 360
                                                                       
Sbjct: 321 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 380

Query: 361 --------------------------------------XXXXXXXXXXXXXXXXXXXXXX 373
                                                 XXXXXXXXXXXXXXXXXXXXXX
Sbjct: 381 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 440

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BLAST of CsGy7G016340 vs. NCBI nr
Match: XP_011659779.1 (PREDICTED: two-component response regulator EHD1-like [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 1.9e-10
Identity = 40/82 (48.78%), Postives = 52/82 (63.41%), Query Frame = 0


Query: 45  QNNSFDADEPLQRQEIFPRRTRFIWTDEYHRIFVEAVDRLTLQ--RAVPRKILEYMINCG 104
           + NS   D       I  R+ RF WT+EYHRIF++ +D +TL+  + VP  I +YM + G
Sbjct: 214 EENSEGLDNDHXXXTIVDRKRRFNWTEEYHRIFLDGIDDITLKAIKVVPANITKYMHDRG 273

Query: 105 VQNITRAIVASHLQKYRLNLKK 125
           V  I R  VASHLQKYRLN+KK
Sbjct: 274 VSQIQREHVASHLQKYRLNIKK 295

[Close]

BLAST of CsGy7G016340 vs. NCBI nr
Match: KGN44985.1 (hypothetical protein Csa_7G405910 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 2.5e-10
Identity = 40/83 (48.19%), Postives = 52/83 (62.65%), Query Frame = 0


Query: 45  QNNSFDADEPLQRQEIFPRRTRFIWTDEYHRIFVEAVDRLTLQ---RAVPRKILEYMINC 104
           + NS   D       I  R+ RF WT+EYHRIF++ +D +TL+   + VP  I +YM + 
Sbjct: 214 EENSEGLDNDHXXXTIVDRKRRFNWTEEYHRIFLDGIDDITLKAISKVVPANITKYMHDR 273

Query: 105 GVQNITRAIVASHLQKYRLNLKK 125
           GV  I R  VASHLQKYRLN+KK
Sbjct: 274 GVSQIQREHVASHLQKYRLNIKK 296

[Close]

BLAST of CsGy7G016340 vs. NCBI nr
Match: XP_016193006.1 (two-component response regulator ARR14-like [Arachis ipaensis] >XP_025640897.1 two-component response regulator ARR14-like [Arachis hypogaea])

HSP 1 Score: 75.1 bits (183), Expect = 5.6e-10
Identity = 38/67 (56.72%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 63  RRTRFIWTDEYHRIFVEAVDRLTLQRAVPRKILEYMINCGVQNITRAIVASHLQKYRLNL 122
           ++ RFIWT E H++FV+AV +L + +AVPRKILE M    + N+TR  VASHLQKYR++L
Sbjct: 196 KKPRFIWTQERHQMFVDAVLQLGIDKAVPRKILELM---DIPNLTRENVASHLQKYRMHL 255

Query: 123 KKGNLET 130
           KK + ET
Sbjct: 256 KKKSQET 259

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BLAST of CsGy7G016340 vs. NCBI nr
Match: PKI43115.1 (hypothetical protein CRG98_036494 [Punica granatum])

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-09
Identity = 41/85 (48.24%), Postives = 59/85 (69.41%), Query Frame = 0


Query: 52  DEPLQRQEIFP----RRTRFIWTDEYHRIFVEAVDRLTLQRAVPRKILEYMINCGVQNIT 111
           D+ +Q+Q++ P    +RTR  W+ E H  F++A+D L +++AVP+ ILE M +   +NIT
Sbjct: 224 DDNVQKQDVDPSRTRKRTRLNWSQELHFKFIKAIDHLGIEKAVPKNILELMND---ENIT 283

Query: 112 RAIVASHLQKYRLNLKKG-NLETDK 132
           R  VASHLQKYRL+LKK  NL  +K
Sbjct: 284 REHVASHLQKYRLSLKKARNLANEK 305

[Close]

BLAST of CsGy7G016340 vs. TAIR10
Match: AT5G58080.1 (response regulator 18)

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-10
Identity = 32/62 (51.61%), Postives = 44/62 (70.97%), Query Frame = 0


Query: 63  RRTRFIWTDEYHRIFVEAVDRLTLQRAVPRKILEYMINCGVQNITRAIVASHLQKYRLNL 122
           ++ R +W+ E H+ FV AV +L L +AVP+KIL+ M    ++ +TR  VASHLQKYRL L
Sbjct: 176 KKPRVVWSQELHQKFVSAVQQLGLDKAVPKKILDLM---SIEGLTRENVASHLQKYRLYL 234

Query: 123 KK 125
           KK
Sbjct: 236 KK 234

[Close]

BLAST of CsGy7G016340 vs. TAIR10
Match: AT4G31920.1 (response regulator 10)

HSP 1 Score: 63.2 bits (152), Expect = 4.0e-10
Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 63  RRTRFIWTDEYHRIFVEAVDRLTLQRAVPRKILEYMINCGVQNITRAIVASHLQKYRLNL 122
           ++ R +WT E H  F+ AVD L ++RAVP+KIL+ M    V  +TR  VASHLQK+R+ L
Sbjct: 182 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLM---NVDKLTRENVASHLQKFRVAL 240

Query: 123 KK 125
           KK
Sbjct: 242 KK 240

[Close]

BLAST of CsGy7G016340 vs. TAIR10
Match: AT2G25180.1 (response regulator 12)

HSP 1 Score: 61.2 bits (147), Expect = 1.5e-09
Identity = 32/77 (41.56%), Postives = 52/77 (67.53%), Query Frame = 0


Query: 63  RRTRFIWTDEYHRIFVEAVDRLTLQRAVPRKILEYMINCGVQNITRAIVASHLQKYRLNL 122
           ++ R +WT E H+ FV AV++L  ++A+P+KIL+ M    V+ +TR  VASHLQK+RL L
Sbjct: 194 KKQRVVWTVELHKKFVAAVNQLGYEKAMPKKILDLM---NVEKLTRENVASHLQKFRLYL 253

Query: 123 KK-GNLETDKALTVHSQ 139
           K+   +   +A+  +S+
Sbjct: 254 KRISGVANQQAIMANSE 267

[Close]

BLAST of CsGy7G016340 vs. TAIR10
Match: AT2G40970.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 60.5 bits (145), Expect = 2.6e-09
Identity = 29/62 (46.77%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 63  RRTRFIWTDEYHRIFVEAVDRLTLQRAVPRKILEYMINCGVQNITRAIVASHLQKYRLNL 122
           +R R +WT + H+ FV+AV  L ++ AVP+ I++ M    V+ +TR  VASHLQKYRL L
Sbjct: 104 KRPRLVWTPQLHKRFVDAVGHLGIKNAVPKTIMQLM---SVEGLTRENVASHLQKYRLYL 162

Query: 123 KK 125
           ++
Sbjct: 164 RR 162

[Close]

BLAST of CsGy7G016340 vs. TAIR10
Match: AT3G16857.2 (response regulator 1)

HSP 1 Score: 60.5 bits (145), Expect = 2.6e-09
Identity = 30/62 (48.39%), Postives = 45/62 (72.58%), Query Frame = 0


Query: 63  RRTRFIWTDEYHRIFVEAVDRLTLQRAVPRKILEYMINCGVQNITRAIVASHLQKYRLNL 122
           ++ R +W+ E H+ FV AV++L +++AVP+KILE M    V  +TR  VASHLQKYR+ L
Sbjct: 236 KKPRVVWSVELHQQFVAAVNQLGVEKAVPKKILELM---NVPGLTRENVASHLQKYRIYL 294

Query: 123 KK 125
           ++
Sbjct: 296 RR 294

[Close]

BLAST of CsGy7G016340 vs. Swiss-Prot
Match: sp|A2X1N2|ORR24_ORYSI (Two-component response regulator ORR24 OS=Oryza sativa subsp. indica OX=39946 GN=RR24 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.2e-10
Identity = 37/68 (54.41%), Postives = 50/68 (73.53%), Query Frame = 0


Query: 63  RRTRFIWTDEYHRIFVEAVDRLTLQRAVPRKILEYMINCGVQNITRAIVASHLQKYRLNL 122
           ++ R +W+ E HR FV AV++L +++AVP+KIL+ M    V+NITR  VASHLQKYRL L
Sbjct: 212 KKPRVVWSVELHRKFVAAVNQLGIEKAVPKKILDLM---NVENITRENVASHLQKYRLYL 271

Query: 123 KKGNLETD 131
           K+  L TD
Sbjct: 272 KR--LSTD 274

[Close]

BLAST of CsGy7G016340 vs. Swiss-Prot
Match: sp|Q6H805|ORR24_ORYSJ (Two-component response regulator ORR24 OS=Oryza sativa subsp. japonica OX=39947 GN=RR24 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.2e-10
Identity = 37/68 (54.41%), Postives = 50/68 (73.53%), Query Frame = 0


Query: 63  RRTRFIWTDEYHRIFVEAVDRLTLQRAVPRKILEYMINCGVQNITRAIVASHLQKYRLNL 122
           ++ R +W+ E HR FV AV++L +++AVP+KIL+ M    V+NITR  VASHLQKYRL L
Sbjct: 212 KKPRVVWSVELHRKFVAAVNQLGIEKAVPKKILDLM---NVENITRENVASHLQKYRLYL 271

Query: 123 KKGNLETD 131
           K+  L TD
Sbjct: 272 KR--LSTD 274

[Close]

BLAST of CsGy7G016340 vs. Swiss-Prot
Match: sp|B8AEH1|ORR23_ORYSI (Two-component response regulator ORR23 OS=Oryza sativa subsp. indica OX=39946 GN=RR23 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.9e-10
Identity = 39/87 (44.83%), Postives = 55/87 (63.22%), Query Frame = 0


Query: 38  SVAESGDQNNSFDADEPLQRQEIFPRRTRFIWTDEYHRIFVEAVDRLTLQRAVPRKILEY 97
           S  E   + N+ D D+P       P++ R +W+ E HR FV AV++L + +AVP++ILE 
Sbjct: 193 SEEEDEGEVNTQDIDDPSA-----PKKPRVVWSVELHRKFVAAVNQLGIDKAVPKRILEL 252

Query: 98  MINCGVQNITRAIVASHLQKYRLNLKK 125
           M    V+ +TR  VASHLQKYRL LK+
Sbjct: 253 M---NVEKLTRENVASHLQKYRLYLKR 271

[Close]

BLAST of CsGy7G016340 vs. Swiss-Prot
Match: sp|Q6K8X6|ORR23_ORYSJ (Two-component response regulator ORR23 OS=Oryza sativa subsp. japonica OX=39947 GN=RR23 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.9e-10
Identity = 39/87 (44.83%), Postives = 55/87 (63.22%), Query Frame = 0


Query: 38  SVAESGDQNNSFDADEPLQRQEIFPRRTRFIWTDEYHRIFVEAVDRLTLQRAVPRKILEY 97
           S  E   + N+ D D+P       P++ R +W+ E HR FV AV++L + +AVP++ILE 
Sbjct: 193 SEEEDEGEVNTQDIDDPSA-----PKKPRVVWSVELHRKFVAAVNQLGIDKAVPKRILEL 252

Query: 98  MINCGVQNITRAIVASHLQKYRLNLKK 125
           M    V+ +TR  VASHLQKYRL LK+
Sbjct: 253 M---NVEKLTRENVASHLQKYRLYLKR 271

[Close]

BLAST of CsGy7G016340 vs. Swiss-Prot
Match: sp|Q9FGT7|ARR18_ARATH (Two-component response regulator ARR18 OS=Arabidopsis thaliana OX=3702 GN=ARR18 PE=2 SV=2)

HSP 1 Score: 64.7 bits (156), Expect = 2.5e-09
Identity = 32/62 (51.61%), Postives = 44/62 (70.97%), Query Frame = 0


Query: 63  RRTRFIWTDEYHRIFVEAVDRLTLQRAVPRKILEYMINCGVQNITRAIVASHLQKYRLNL 122
           ++ R +W+ E H+ FV AV +L L +AVP+KIL+ M    ++ +TR  VASHLQKYRL L
Sbjct: 193 KKPRVVWSQELHQKFVSAVQQLGLDKAVPKKILDLM---SIEGLTRENVASHLQKYRLYL 251

Query: 123 KK 125
           KK
Sbjct: 253 KK 251

[Close]

BLAST of CsGy7G016340 vs. TrEMBL
Match: tr|A0A0A0KB26|A0A0A0KB26_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G405920 PE=4 SV=1)

HSP 1 Score: 402.5 bits (1033), Expect = 1.0e-108
Identity = 372/618 (60.19%), Postives = 372/618 (60.19%), Query Frame = 0


Query: 1   MPVNNRSLGREENSAVPTASINIGEFGESSTGELGGRSVAESGDQNNSFDADEPLQRQEI 60
           MPVNNRSLGREENSAVPTASINIGEFGESSTGELGGRSVAESGDQNNSFDADEPLQRQEI
Sbjct: 21  MPVNNRSLGREENSAVPTASINIGEFGESSTGELGGRSVAESGDQNNSFDADEPLQRQEI 80

Query: 61  FPRRTRFIWTDEYHRIFVEAVDRLTLQRAVPRKILEYMINCGVQNITRAIVASHLQ---- 120
           FPRRTRFIWTDEYHRIFVEAVDRLTLQRAVPRKILEYMINCGVQNITRAIVASHLQ    
Sbjct: 81  FPRRTRFIWTDEYHRIFVEAVDRLTLQRAVPRKILEYMINCGVQNITRAIVASHLQGFYP 140

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 141 VAIHLSLFSFLPWMCPVLGNITPLFIPNSGRQHSLVYVPLLYFFVFHVPDGYIHFDPSTA 200

Query: 181 ------------------------------------------KYRLNLKKGNLETDKALT 240
                                                     KYRLNLKKGNLETDKALT
Sbjct: 201 KSQTLFHFSWLVWYGKLWEKVYYNPHVVRSSEVFPLHGRPCAKYRLNLKKGNLETDKALT 260

Query: 241 VHSQSISFNTARRRNQGK------------------------------------------ 300
           VHSQSISFNTARRRNQGK                                          
Sbjct: 261 VHSQSISFNTARRRNQGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 320

Query: 301 ------------------------------------------------------------ 360
                                                                       
Sbjct: 321 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 380

Query: 361 --------------------------------------XXXXXXXXXXXXXXXXXXXXXX 373
                                                 XXXXXXXXXXXXXXXXXXXXXX
Sbjct: 381 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 440

[Close]

BLAST of CsGy7G016340 vs. TrEMBL
Match: tr|A0A0A0K5M5|A0A0A0K5M5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G405910 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.7e-10
Identity = 40/83 (48.19%), Postives = 52/83 (62.65%), Query Frame = 0


Query: 45  QNNSFDADEPLQRQEIFPRRTRFIWTDEYHRIFVEAVDRLTLQ---RAVPRKILEYMINC 104
           + NS   D       I  R+ RF WT+EYHRIF++ +D +TL+   + VP  I +YM + 
Sbjct: 214 EENSEGLDNDHXXXTIVDRKRRFNWTEEYHRIFLDGIDDITLKAISKVVPANITKYMHDR 273

Query: 105 GVQNITRAIVASHLQKYRLNLKK 125
           GV  I R  VASHLQKYRLN+KK
Sbjct: 274 GVSQIQREHVASHLQKYRLNIKK 296

[Close]

BLAST of CsGy7G016340 vs. TrEMBL
Match: tr|A0A2I0IGH3|A0A2I0IGH3_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_036494 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 8.3e-10
Identity = 41/85 (48.24%), Postives = 59/85 (69.41%), Query Frame = 0


Query: 52  DEPLQRQEIFP----RRTRFIWTDEYHRIFVEAVDRLTLQRAVPRKILEYMINCGVQNIT 111
           D+ +Q+Q++ P    +RTR  W+ E H  F++A+D L +++AVP+ ILE M +   +NIT
Sbjct: 224 DDNVQKQDVDPSRTRKRTRLNWSQELHFKFIKAIDHLGIEKAVPKNILELMND---ENIT 283

Query: 112 RAIVASHLQKYRLNLKKG-NLETDK 132
           R  VASHLQKYRL+LKK  NL  +K
Sbjct: 284 REHVASHLQKYRLSLKKARNLANEK 305

[Close]

BLAST of CsGy7G016340 vs. TrEMBL
Match: tr|A0A166FGB8|A0A166FGB8_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006227 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 5.4e-09
Identity = 45/105 (42.86%), Postives = 58/105 (55.24%), Query Frame = 0


Query: 26  FGESSTGELGGRSVAESGDQNNSFDADEPLQRQEIFPRRTRFIWTDEYHRIFVEAVDRLT 85
           FG+        R   E    ++    D+  Q      +RTR IWT E HR FVEA+ +L 
Sbjct: 28  FGDEINQTTENRKRKEPEGSSSGEQPDDGDQDDSHVQKRTRVIWTSEMHRKFVEAIAQLG 87

Query: 86  LQRAVPRKILEYMINCGVQNITRAIVASHLQKYRLNLKKGNLETD 131
             RA P+KILE M   G   +T+  VASHLQKYRL+LKK  +E+D
Sbjct: 88  EDRAFPKKILEEMNEPG---LTKENVASHLQKYRLSLKKSLVESD 129

[Close]

BLAST of CsGy7G016340 vs. TrEMBL
Match: tr|A0A1U8PBI6|A0A1U8PBI6_GOSHI (two-component response regulator ARR2-like OS=Gossypium hirsutum OX=3635 GN=LOC107956500 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 5.4e-09
Identity = 40/89 (44.94%), Postives = 55/89 (61.80%), Query Frame = 0


Query: 37  RSVAESGDQNNSFDADEPLQRQEIFPRRTRFIWTDEYHRIFVEAVDRLTLQRAVPRKILE 96
           R   +   +N   D +  L  +    ++ R IWT E H IFV AV++L  Q+AVP+KILE
Sbjct: 191 RRTLKRARENEDEDDEGELSEEVTTAKKPRVIWTQELHDIFVIAVNQLR-QQAVPKKILE 250

Query: 97  YMINCGVQNITRAIVASHLQKYRLNLKKG 126
            M    V  ++RA +ASHLQKYRL+L+KG
Sbjct: 251 RMQAMNVTGLSRANIASHLQKYRLHLRKG 278

The following BLAST results are available for this feature:

BLAST of CsGy7G016340 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44986.1	1.5e-108	60.19	hypothetical protein Csa_7G405920 [Cucumis sativus]	[more]
XP_011659779.1	1.9e-10	48.78	PREDICTED: two-component response regulator EHD1-like [Cucumis sativus]	[more]
KGN44985.1	2.5e-10	48.19	hypothetical protein Csa_7G405910 [Cucumis sativus]	[more]
XP_016193006.1	5.6e-10	56.72	two-component response regulator ARR14-like [Arachis ipaensis] >XP_025640897.1 t...	[more]
PKI43115.1	1.3e-09	48.24	hypothetical protein CRG98_036494 [Punica granatum]	[more]

BLAST of CsGy7G016340 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G58080.1	1.4e-10	51.61	response regulator 18	[more]
AT4G31920.1	4.0e-10	51.61	response regulator 10	[more]
AT2G25180.1	1.5e-09	41.56	response regulator 12	[more]
AT2G40970.1	2.6e-09	46.77	Homeodomain-like superfamily protein	[more]
AT3G16857.2	2.6e-09	48.39	response regulator 1	[more]

BLAST of CsGy7G016340 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A2X1N2\|ORR24_ORYSI	2.2e-10	54.41	Two-component response regulator ORR24 OS=Oryza sativa subsp. indica OX=39946 GN...	[more]
sp\|Q6H805\|ORR24_ORYSJ	2.2e-10	54.41	Two-component response regulator ORR24 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
sp\|B8AEH1\|ORR23_ORYSI	2.9e-10	44.83	Two-component response regulator ORR23 OS=Oryza sativa subsp. indica OX=39946 GN...	[more]
sp\|Q6K8X6\|ORR23_ORYSJ	2.9e-10	44.83	Two-component response regulator ORR23 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
sp\|Q9FGT7\|ARR18_ARATH	2.5e-09	51.61	Two-component response regulator ARR18 OS=Arabidopsis thaliana OX=3702 GN=ARR18 ...	[more]

BLAST of CsGy7G016340 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KB26\|A0A0A0KB26_CUCSA	1.0e-108	60.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G405920 PE=4 SV=1	[more]
tr\|A0A0A0K5M5\|A0A0A0K5M5_CUCSA	1.7e-10	48.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G405910 PE=4 SV=1	[more]
tr\|A0A2I0IGH3\|A0A2I0IGH3_PUNGR	8.3e-10	48.24	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_036494 PE=4 SV=1	[more]
tr\|A0A166FGB8\|A0A166FGB8_DAUCA	5.4e-09	42.86	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006227 ...	[more]
tr\|A0A1U8PBI6\|A0A1U8PBI6_GOSHI	5.4e-09	44.94	two-component response regulator ARR2-like OS=Gossypium hirsutum OX=3635 GN=LOC1...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf
IPR006447	Myb_dom_plants

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050794	regulation of cellular process
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G016340.1	CsGy7G016340.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 151..174
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 61..125 e-value: 2.6E-22 score: 80.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 147..166
None	No IPR available	PANTHER	PTHR31442:SF12	TRANSCRIPTION FACTOR BOA-RELATED	coord: 50..270
None	No IPR available	PANTHER	PTHR31442	FAMILY NOT NAMED	coord: 50..270
IPR006447	Myb domain, plants	TIGRFAM	TIGR01557	TIGR01557	coord: 66..121 e-value: 1.4E-16 score: 58.5
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	SSF46689	Homeodomain-like	coord: 62..124

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy7G016340	ClCG09G005390	Watermelon (Charleston Gray)	cgybwcgB486
CsGy7G016340	CsaV3_7G029680	Cucumber (Chinese Long) v3	cgybcucB347
CsGy7G016340	Cla97C09G167860	Watermelon (97103) v2	cgybwmbB543

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy7G016340	Cucumber (Gy14) v2	cgybcgybB134
CsGy7G016340	Cucurbita maxima (Rimu)	cgybcmaB925
CsGy7G016340	Cucurbita maxima (Rimu)	cgybcmaB973
CsGy7G016340	Cucurbita moschata (Rifu)	cgybcmoB909
CsGy7G016340	Cucurbita moschata (Rifu)	cgybcmoB955
CsGy7G016340	Cucurbita pepo (Zucchini)	cgybcpeB906
CsGy7G016340	Cucurbita pepo (Zucchini)	cgybcpeB931
CsGy7G016340	Cucumber (Chinese Long) v2	cgybcuB323
CsGy7G016340	Bottle gourd (USVL1VR-Ls)	cgyblsiB472
CsGy7G016340	Melon (DHL92) v3.5.1	cgybmeB470
CsGy7G016340	Melon (DHL92) v3.5.1	cgybmeB501
CsGy7G016340	Melon (DHL92) v3.6.1	cgybmedB467
CsGy7G016340	Melon (DHL92) v3.6.1	cgybmedB497
CsGy7G016340	Watermelon (Charleston Gray)	cgybwcgB492
CsGy7G016340	Watermelon (97103) v1	cgybwmB537
CsGy7G016340	Watermelon (97103) v1	cgybwmB530
CsGy7G016340	Wild cucumber (PI 183967)	cgybcpiB331
CsGy7G016340	Silver-seed gourd	carcgybB0120
CsGy7G016340	Silver-seed gourd	carcgybB0569
CsGy7G016340	Silver-seed gourd	carcgybB0807
CsGy7G016340	Cucumber (Chinese Long) v3	cgybcucB336
CsGy7G016340	Watermelon (97103) v2	cgybwmbB490
CsGy7G016340	Wax gourd	cgybwgoB618
CsGy7G016340	Wax gourd	cgybwgoB660