CsGy7G013990 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy7G013990
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	RING-type E3 ubiquitin transferase
Location	Chr7 : 18024032 .. 18029353 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGAGGCACTTTCCAATCCCACTCCCTATCCTCCTCTGCTTCTGTCTCCGATGTTGTCACTTCACAAGACTTTGCGATGATGACAGAGCCTTCACCTCTACCGTCTCGGCTCCAGTTTTCACCGCCTTTACTTGACTCGTAGTTGAAGGATCGAGCAGTGATAGAAACATGCCAAGGTTTTACATTGACAATGCTCCTAGCTTGAATATTGTTTCCATCGTTGCTTCATGAGTCTATGCTATTTCCACTTTTTCACTGCCCTCCACGTCTTTGGTAAGCTTTATTGCTTGTGATTCGCGGTTGGAGTTCAATCTGATGCTCATTTCATGCAAAGTGCTTTTTTCCTTCTCGATCTTTTCATTCCCTAGATGGAATGTTCAAGTTTCTACTGACCTGATGACTTAACACTTTGTTTTGGTTTTCTCTCTAAATTTAACAGTTGTTGTAGTCTTTTGAGGTTTGAATTCCATCAGTTTTGGACGTATCAAAAGGAAGAGAGCTTTCTTCTGCTGGTATTTTCTCTTTACTTTGTATATTTCAGAAGATTGTAATGACCACACTTATCCAGAAGAGATTCTAATGATCTTATTGTTTCTGAGGTACTTTAATTTCTTTTTTCCTCCTTTTACTAACTCTCTTTTGCTGCTGGTTGTGTGAAACTTAATCCTTTTAATGTATTGTTTGTGTTTAAAGTCCAGATTGGCAAATTTTATAGTTCTTGATTTCTATTTCTAACAAAATTTTGTGTGTGCATGAGGGTGTGTGGTCTACAATCTAGCCATTAACAATAGTTGTTCTTATTAGTATGTTTCGAAATGTTGATGCTGGTGGATGGGTTATTCCATGACGAAAAATTAACACATTAGAGATGAAGGAGAGACTCTATGAAGTGAACGTTTGATTCATTGGGGATTTTCTTGGAAATTTGTTGTTCCACCGCTTTGGAGGATGCTTTTTAGGCTATTTGGAAAAATAAAACTCGAAAACTTTAGCCTTAACTTAGGCCTTCTTTGGACTAACTATTTTCTATAAGGTTCATAAATAAAGTCACATCCACAAATTATTGCCTGTGCAAAAATTGATTAGCGGGTTTATTTCATACACTTATTCATTACACATTTGTTGGGAAGTTCTGGGGAAAGCCACTTAATATCCTTGATTTGTTGGGATGTACTTTTAAATGTTGATGACGTCACTAATAATGAATGACAGTGCATTAATACTTTAGTAGTATAGTAAAGTTTTCTGTTTGTGACTTTTAAGAGAGACTTTTTTCTAAACATTTTGTAACTTAAGTTTTTTTTCTTTTATATATATATACATATGTATTATTTTTTATGTAAATCCAATCGAAATGTGTTTTTTGGACTCTCTTGACTATGGGGCTCTCTTATTTTTGTGTACAACTCACATTTTCAATGAAGAGTGTACTCCATGCTATATTTGTTTCGTAATGTATGTATAACCTGCCATGGTTTTGTTATAACAGGGAATGAAATGAATAGTTTATGCTGCTAGTGAAAGGGATATGACCATCTTTGCAGCGGGAATGATCAAGGTAAATTCCTCCTGTATTATTTTGACGAAGCTTTCCACTAAACATGCTCGTATTTGATTACTGAAAATACTCTATCATACAATCTGATGTTAATCAGATAGTTGTATTGAAAGTAGAGACAAAGAACACATAACTTTACATGAAAACTCGAGTATTGGAAGAAAAACCATGATATTTGTTTCTTATCATTTTCTATTGGAGAAGTTGAAAGTCCCACATTGGAAAAACCAAGGAGACTCATACTTCATATAAGATAGATAGGTTACTTCTCTTATTGTCAATTGGTTTTGAGATGAAACCCCGTACTATCAAATTTAATATGGTATCTATTTAACCACCAATTCATCCAAAAGCTTAAGCTAGTGGTTGAAGGCAAATTTAATTATATATCACCAACACTCTCCTTCACTTGTGGGGTTGAAATATTTGAAAGGTCCAACAAGTGGAATCAATTTTACCTCACTTTTGGGTTTGAAATATTTGAAAAGCCCAACAAGTGGAAATTGATTTTAATTGGGGAGTAAACGACAATGCAGGGGCTTGAACATAGAACCTTCCTAGACCACTTGCTCTGATACCATATTAAACCACCAAATAGTATCGGAGCAGGTGGTCCAGTGTTTAAGCCTCGACATTTTTGTTACCACCCCAATTAAAACCGATTTCCACGTATTGTGCCTTTCAAATATTTTATGCCCACAAGTGAGGATGAGTGTTGGTGATATATAATTAAATTTGCTTTCAACCACTAGCTTAAGCTTTTGGGTGAATTGGTGGTTTAACATGGTATCGGAGTTCAAGAAATCCAAATGGGTATTCGGTCCAAGATAGGTGAACCCATAGTCCAAGATAGGTGAACCCAAAGACACCATCTTGAGGGGGCATGTTGGAGAAGTTGAGAGTCCTACATTGGAAAAACTAAGGAGACTCATACTCCATGTAAGATAGATGAATTACTCCTCTCGTTGTCAATTGGTTTTGAGATAGAACTCCATACTATCAAATTTAACATTTTCTGATAATAAAAAAGGTACAAATAGGGAATATTTATATGCAACACGAGCCTAATAAAAAGAATAAAGAATTAGGGTAAAAAAAATCTTAACTACCCATGGGCTTTCATCGAGGTCCAAGCCCACTATTTCTAACCAATTGATTTGTAGAGCCTCTGTTTCTGGTTTTGAGTATCTGTTCTATTCTTTTTTTTACTTAGGTTAAAGGTTTATTTTTTGTTTTCATTATTTGTTGTTAGTTAAAGATAGGGTCCTTAGTTTATAAAAGTTTTTATTAAAAAAAATAATTAAAACAAGAATTCTCCAAGATTGTGTCCAAGAAAATTAGTTTATACTACTATCTTTTTTTACTTGGTAGGCAGAAATGAAGAGCAAGAATTTCTCAAGTCGAACTGTGGCCAAATGTGTATTTTTAAAATGAGACAAATTTCTTTACCTCTGTAGAGAGACAAGTAGATAAAACAAATGCTTTTATTGAAAGGATGGAAACAAATGGTTGTACTCCGGACGCAATTACTTATAATACACTTCTGCGTGGGTTTTCTGAAAGTAATTAATCAGAGAAGGTGGTTGAACTTCCCCATGAGATGGTTCATAAGGATGTGTCGCCAGAAGCCAACATTCTGCGCTATAGTTGTAGGTGTGCTTTTCAAAAATGAAAAATATGGAGAATGTCTAGACTTGCTTTCAAGGTTTTCTGTTCAAGAGCCTTAACGTTGATAATATAACATTTATTGGTAGATTCATTAGGGGCCTAAGAAGCATGAACACGGACACGAATATGATAGGACATGACAATATGTCAATTTCTAAAATAATAGGACATAGACATGTTGGGATACACTATTTTTTAAAATTAATTTTTATAATATATGTAAATTTGTTACAAAATACTACATGTTCTTCATTTCCTCAAAAAAAAAAAAAAAAATACTAAATGTTTTTTTTTAAAAAAGTATAAAATCTCATTGTGTCATTGTCAAGTTAATATTTAACCATTGTTGTATGTAGGAGTACAAAACATATTCTATATATACAACATTCAACCTATACCTAAGTTAGCAATTGTTAATTTAATGTAACAATAAAAAATGGAAAGTGATTTTCCATACCAAAAAAGATATGAAAGACTAATAAAAAACTATCCTCTCAAATCTCATTGACATCATGATCCTTGTCAACACCGTCCTCATTAATAATTTCAGCCTCCAACTTTGGATCATCTAAAGATAAATTAGCTACTTCAAGCATGCTCGCATCTTCAAGCGAATTAAAAGCATCTCCTACAATATCCCAAACTTGGTTTCTTCTTTTGAATATTTTGGAGTTTTCTAGACAAGAGACGTAGGTTATTGTAGATAAATATCAAATCCTCTGCACGTTTAGACGTCATTTTGTTCTTCCTAAAGGAGTTAAGAAAAGAGTATGTGCTCCAATTTCTTTCCCAATATGAAGAAGATGATGGTTGTCCTAAAACTTTAAAAGCAATCTTTTGAAGCATTGGTGCATAAGTTCCATGAGTTACCACCAACTTTTGTATCTCTTGCCCGTGTGTTTTTTTATTCTTTCTCTATGAAAGTCATCGTTTCTAATAAAGAGAAAGTGTTATAATTTTTTAGGTGCGTCGGTCCTAAAAATATTCAAAATTTCTGTCCAGTGTTTTGGGTCAATGCTTCAAGAAGAAACCGATCAATTTTTTTTTTTTTTTCTGGTTGTTGAAGCCTCAGTGGGACAATAATAGGTGCATTTGAGTTCACGAGTGTAAGGAAATTCTTTATTCTGTGCTTTCCTTTTTGTAGTATAGCATTTTTGAAATATAAATTATCTGGAGAGTTTTATGATTTTATCTATAACTTCTGTGTCTATGGTGGATTAATTTTGTTCCTCTTTCTTTCTGTTTGTATTTTTTTTCTTTAGACAATTTTTCTTCTAATAAAAAAGAACAAGATTTAGCCTTAAAAAAAAAAAAAAAGGAAGAAAATTTTTATGGTTGGTACTCTCTTAACTAGTTATCTTTGAACTATTCATTGCAAGAATTTCCTTGCCCAATTCCTTTGGAAGTTGAAGGAACTCAACATTTAATTTAAGTTATAGCTGATATGCTGCCTATGAATCTATGATAAACTATAAAGCAAGTAGTTTCTATGTTCAATGTCCATCTCCATGTTTCATTTTTAGGATCCCTGGTTATATTCTAAGAAGTGGATTAGATTACTTGACGATTCTGGTTGGTTGTACTAAAAAAATACATGGTGTTATACACTTCTTTTATTTGTTTTCTTCTCTTTAATATTTGTGTTTAACACTGAACTATTTTGTGACCTGTGGTACTTATCTAATGGGTGAACTTGGGTAGTGAGAGCCATGTTTTGATGGTAATTGAAATCATGAAAATCCACTGTCTTCATTATTGTTGATATTATCATACTAATCAAAATCTTGTTTATGTGAGGAGCTGATGTTCTTGTTTCTTCTTTAACCAAGATATTGTGCTTATCCATTGCTAATTTAGTCATGTTTGCCTGAAATCAGGACAGATGGGAATACAAAGCCTTTGTCTTTGCCTCTTCCAAAGAAATGCAGAAATCTCGTTGTTGTCTTATAACTTCTGAAAGTCGTCCTTGATGATGTCATTAGCCTCAAACTCTTTTCAGATGAGTTGTTTTATCGTGAATGTGAGTCACTGGATGCAGCTGTAAATGAGGCTCGAGAATTCATCGAAAACTGGTGTCTGAAACAAGCATAA

mRNA sequence

ATGGCAAGAGGCACTTTCCAATCCCACTCCCTATCCTCCTCTGCTTCTGTCTCCGATGTTGTCACTTCACAAGACTTTGCGATGATGACAGAGCCTTCACCTCTACCGTCTCGGCTCCAGTTTTCACCGCCTTTACTTGACTCTTGTTGTAGTCTTTTGAGGTTTGAATTCCATCAGTTTTGGACGTATCAAAAGGAAGAGAGCTTTCTTCTGCTGGCAGAAATGAAGAGCAAGAATTTCTCAAGTCGAACTGTGGCCAAATGTGTGGTTGAACTTCCCCATGAGATGGTTCATAAGGATGTGTCGCCAGAAGCCAACATTCTGCGCTATAGTTGTAGCCTCAGTGGGACAATAATAGGTGCATTTGAGTTCACGAGTGATCCCTGGTTATATTCTAAGAAGTGGATTAGATTACTTGACGATTCTGTCGTCCTTGATGATGTCATTAGCCTCAAACTCTTTTCAGATGAGTTGTTTTATCGTGAATGTGAGTCACTGGATGCAGCTGTAAATGAGGCTCGAGAATTCATCGAAAACTGGTGTCTGAAACAAGCATAA

Coding sequence (CDS)

ATGGCAAGAGGCACTTTCCAATCCCACTCCCTATCCTCCTCTGCTTCTGTCTCCGATGTTGTCACTTCACAAGACTTTGCGATGATGACAGAGCCTTCACCTCTACCGTCTCGGCTCCAGTTTTCACCGCCTTTACTTGACTCTTGTTGTAGTCTTTTGAGGTTTGAATTCCATCAGTTTTGGACGTATCAAAAGGAAGAGAGCTTTCTTCTGCTGGCAGAAATGAAGAGCAAGAATTTCTCAAGTCGAACTGTGGCCAAATGTGTGGTTGAACTTCCCCATGAGATGGTTCATAAGGATGTGTCGCCAGAAGCCAACATTCTGCGCTATAGTTGTAGCCTCAGTGGGACAATAATAGGTGCATTTGAGTTCACGAGTGATCCCTGGTTATATTCTAAGAAGTGGATTAGATTACTTGACGATTCTGTCGTCCTTGATGATGTCATTAGCCTCAAACTCTTTTCAGATGAGTTGTTTTATCGTGAATGTGAGTCACTGGATGCAGCTGTAAATGAGGCTCGAGAATTCATCGAAAACTGGTGTCTGAAACAAGCATAA

Protein sequence

MARGTFQSHSLSSSASVSDVVTSQDFAMMTEPSPLPSRLQFSPPLLDSCCSLLRFEFHQFWTYQKEESFLLLAEMKSKNFSSRTVAKCVVELPHEMVHKDVSPEANILRYSCSLSGTIIGAFEFTSDPWLYSKKWIRLLDDSVVLDDVISLKLFSDELFYRECESLDAAVNEAREFIENWCLKQA

Homology

[Close]

BLAST of CsGy7G013990 vs. NCBI nr
Match: XP_008451242.1 (PREDICTED: U-box domain-containing protein 3 [Cucumis melo] >XP_008451243.1 PREDICTED: U-box domain-containing protein 3 [Cucumis melo])

HSP 1 Score: 76.6 bits (187), Expect = 9.6e-11
Identity = 37/41 (90.24%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 143 VVLDDVISLKLFSDELFYRECESLDAAVNEAREFIENWCLK 184
           VVLDDVISLKL SDELFY ECESLD AVNEAREFIENWC K
Sbjct: 46  VVLDDVISLKLSSDELFYSECESLDTAVNEAREFIENWCPK 86

[Close]

BLAST of CsGy7G013990 vs. NCBI nr
Match: XP_011659243.1 (PREDICTED: U-box domain-containing protein 3 [Cucumis sativus] >XP_011659244.1 PREDICTED: U-box domain-containing protein 3 [Cucumis sativus] >XP_011659245.1 PREDICTED: U-box domain-containing protein 3 [Cucumis sativus] >KGN44724.1 hypothetical protein Csa_7G374670 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 2.1e-10
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 143 VVLDDVISLKLFSDELFYRECESLDAAVNEAREFIENWCLK 184
           VVLDDVISLKL SDEL Y ECESLDAAVNEAREF+ENWC K
Sbjct: 46  VVLDDVISLKLSSDELLYSECESLDAAVNEAREFVENWCPK 86

[Close]

BLAST of CsGy7G013990 vs. NCBI nr
Match: XP_022959916.1 (U-box domain-containing protein 3-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 74.3 bits (181), Expect = 4.8e-10
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 143 VVLDDVISLKLFSDELFYRECESLDAAVNEAREFIENWCLKQA 186
           +VLDDVISLKL SDEL YRECESLD AVN+AREFIENWC K +
Sbjct: 65  LVLDDVISLKLSSDELLYRECESLDIAVNDAREFIENWCPKMS 107

[Close]

BLAST of CsGy7G013990 vs. NCBI nr
Match: XP_022959915.1 (U-box domain-containing protein 3-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 74.3 bits (181), Expect = 4.8e-10
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 143 VVLDDVISLKLFSDELFYRECESLDAAVNEAREFIENWCLKQA 186
           +VLDDVISLKL SDEL YRECESLD AVN+AREFIENWC K +
Sbjct: 65  LVLDDVISLKLSSDELLYRECESLDIAVNDAREFIENWCPKMS 107

[Close]

BLAST of CsGy7G013990 vs. NCBI nr
Match: XP_022959917.1 (U-box domain-containing protein 3-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 74.3 bits (181), Expect = 4.8e-10
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 143 VVLDDVISLKLFSDELFYRECESLDAAVNEAREFIENWCLKQA 186
           +VLDDVISLKL SDEL YRECESLD AVN+AREFIENWC K +
Sbjct: 46  LVLDDVISLKLSSDELLYRECESLDIAVNDAREFIENWCPKMS 88

[Close]

BLAST of CsGy7G013990 vs. TAIR10
Match: AT3G54790.1 (ARM repeat superfamily protein)

HSP 1 Score: 49.7 bits (117), Expect = 2.3e-06
Identity = 20/40 (50.00%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 144 VLDDVISLKLFSDELFYRECESLDAAVNEAREFIENWCLK 184
           +LD+V+  K+ SD+  Y+ CE LD+ VN+AREF+E+W  K
Sbjct: 47  LLDEVVDCKIPSDDCLYKGCEDLDSVVNQAREFLEDWSPK 86

[Close]

BLAST of CsGy7G013990 vs. Swiss-Prot
Match: sp|Q8GWV5|PUB3_ARATH (U-box domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=PUB3 PE=2 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 4.1e-05
Identity = 20/40 (50.00%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 144 VLDDVISLKLFSDELFYRECESLDAAVNEAREFIENWCLK 184
           +LD+V+  K+ SD+  Y+ CE LD+ VN+AREF+E+W  K
Sbjct: 47  LLDEVVDCKIPSDDCLYKGCEDLDSVVNQAREFLEDWSPK 86

[Close]

BLAST of CsGy7G013990 vs. TrEMBL
Match: tr|A0A1S3BS34|A0A1S3BS34_CUCME (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103492591 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 6.4e-11
Identity = 37/41 (90.24%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 143 VVLDDVISLKLFSDELFYRECESLDAAVNEAREFIENWCLK 184
           VVLDDVISLKL SDELFY ECESLD AVNEAREFIENWC K
Sbjct: 46  VVLDDVISLKLSSDELFYSECESLDTAVNEAREFIENWCPK 86

[Close]

BLAST of CsGy7G013990 vs. TrEMBL
Match: tr|A0A0A0K726|A0A0A0K726_CUCSA (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_7G374670 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.4e-10
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 143 VVLDDVISLKLFSDELFYRECESLDAAVNEAREFIENWCLK 184
           VVLDDVISLKL SDEL Y ECESLDAAVNEAREF+ENWC K
Sbjct: 46  VVLDDVISLKLSSDELLYSECESLDAAVNEAREFVENWCPK 86

[Close]

BLAST of CsGy7G013990 vs. TrEMBL
Match: tr|F6HZL0|F6HZL0_VITVI (RING-type E3 ubiquitin transferase OS=Vitis vinifera OX=29760 GN=VIT_07s0005g03520 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.5e-07
Identity = 27/42 (64.29%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 144 VLDDVISLKLFSDELFYRECESLDAAVNEAREFIENWCLKQA 186
           VLDDV++ K+ SDE+ ++ECE LD AVNEAREF+ENWC K +
Sbjct: 47  VLDDVVNCKIPSDEILFKECEELDMAVNEAREFVENWCPKMS 88

[Close]

BLAST of CsGy7G013990 vs. TrEMBL
Match: tr|A0A1Q3CU45|A0A1Q3CU45_CEPFO (RING-type E3 ubiquitin transferase OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_27039 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.2e-06
Identity = 26/40 (65.00%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 144 VLDDVISLKLFSDELFYRECESLDAAVNEAREFIENWCLK 184
           +LD+V+  K+ SDE+ Y+ECE LD AVNEAREF+ENWC K
Sbjct: 47  LLDEVVDSKITSDEILYKECELLDTAVNEAREFLENWCPK 86

[Close]

BLAST of CsGy7G013990 vs. TrEMBL
Match: tr|B9T1B5|B9T1B5_RICCO (RING-type E3 ubiquitin transferase OS=Ricinus communis OX=3988 GN=RCOM_0499500 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 6.2e-06
Identity = 25/42 (59.52%), Postives = 33/42 (78.57%), Query Frame = 0


Query: 144 VLDDVISLKLFSDELFYRECESLDAAVNEAREFIENWCLKQA 186
           VLD++I  KL SD++ Y+ECE LD AVN AR+F+ENWC K +
Sbjct: 47  VLDEIIDCKLSSDQILYKECEELDLAVNGARDFMENWCPKMS 88

The following BLAST results are available for this feature:

BLAST of CsGy7G013990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008451242.1	9.6e-11	90.24	PREDICTED: U-box domain-containing protein 3 [Cucumis melo] >XP_008451243.1 PRED...	[more]
XP_011659243.1	2.1e-10	87.80	PREDICTED: U-box domain-containing protein 3 [Cucumis sativus] >XP_011659244.1 P...	[more]
XP_022959916.1	4.8e-10	81.40	U-box domain-containing protein 3-like isoform X2 [Cucurbita moschata]	[more]
XP_022959915.1	4.8e-10	81.40	U-box domain-containing protein 3-like isoform X1 [Cucurbita moschata]	[more]
XP_022959917.1	4.8e-10	81.40	U-box domain-containing protein 3-like isoform X3 [Cucurbita moschata]	[more]

BLAST of CsGy7G013990 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G54790.1	2.3e-06	50.00	ARM repeat superfamily protein	[more]

BLAST of CsGy7G013990 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8GWV5\|PUB3_ARATH	4.1e-05	50.00	U-box domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=PUB3 PE=2 S...	[more]

BLAST of CsGy7G013990 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BS34\|A0A1S3BS34_CUCME	6.4e-11	90.24	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103492591 PE=4 ...	[more]
tr\|A0A0A0K726\|A0A0A0K726_CUCSA	1.4e-10	87.80	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_7G374670 PE...	[more]
tr\|F6HZL0\|F6HZL0_VITVI	2.5e-07	64.29	RING-type E3 ubiquitin transferase OS=Vitis vinifera OX=29760 GN=VIT_07s0005g035...	[more]
tr\|A0A1Q3CU45\|A0A1Q3CU45_CEPFO	1.2e-06	65.00	RING-type E3 ubiquitin transferase OS=Cephalotus follicularis OX=3775 GN=CFOL_v3...	[more]
tr\|B9T1B5\|B9T1B5_RICCO	6.2e-06	59.52	RING-type E3 ubiquitin transferase OS=Ricinus communis OX=3988 GN=RCOM_0499500 P...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004842	ubiquitin-protein transferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G013990.1	CsGy7G013990.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23315:SF119	U-BOX DOMAIN-CONTAINING PROTEIN 3	coord: 144..184
None	No IPR available	PANTHER	PTHR23315	BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING	coord: 144..184

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy7G013990	CSPI07G15490	Wild cucumber (PI 183967)	cgybcpiB331

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy7G013990	Cucurbita maxima (Rimu)	cgybcmaB920
CsGy7G013990	Cucurbita maxima (Rimu)	cgybcmaB973
CsGy7G013990	Cucurbita moschata (Rifu)	cgybcmoB903
CsGy7G013990	Cucurbita moschata (Rifu)	cgybcmoB955
CsGy7G013990	Cucurbita pepo (Zucchini)	cgybcpeB900
CsGy7G013990	Cucurbita pepo (Zucchini)	cgybcpeB932
CsGy7G013990	Cucumber (Chinese Long) v2	cgybcuB323
CsGy7G013990	Bottle gourd (USVL1VR-Ls)	cgyblsiB472
CsGy7G013990	Melon (DHL92) v3.5.1	cgybmeB458
CsGy7G013990	Melon (DHL92) v3.6.1	cgybmedB456
CsGy7G013990	Watermelon (Charleston Gray)	cgybwcgB485
CsGy7G013990	Watermelon (97103) v1	cgybwmB529
CsGy7G013990	Silver-seed gourd	carcgybB0012
CsGy7G013990	Silver-seed gourd	carcgybB0095
CsGy7G013990	Cucumber (Chinese Long) v3	cgybcucB347
CsGy7G013990	Watermelon (97103) v2	cgybwmbB542
CsGy7G013990	Wax gourd	cgybwgoB674