CsGy7G013570 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy7G013570
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	topless-related protein 4-like isoform X2
Location	Chr7 : 17668568 .. 17669241 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGGTTGTAGTTTTACACTCAGAATTTGAAATTTCTAACTCTGTCAAGTTTTGGGATTAGGATTGCTGTTCTTTGGGCGTCCTCAGAGTCGGAAAGTTGAAGGTGTGGCTGGGTGAGAACCTTCATTGAAATAAGATTTGCTTAAGAAAGAGGAAGAAAAAGAAGAGGAAGTAATGGACGAATTTCAACAACATTCACAGTATTTGTTCTCTTTTCCTTCAAATTATATAAAATTGATATAATATTTGATTTTCTATCACTGATTTCCAGAAGCATCTTGCTAATTATTTTTTTCTTTTCTGTTTCCTTATATTATTTTGGGTCAACCTTAGTGTCAAGAGTATGAATTTTCATCCACAACAACAAACTATACTACTTGGTATGTCCCAATTTGCTTTAAAAGCAATATTAACACCTTTTTGTTTTTATGTTGACTGTACTAGGCTTGTAGATCTTGGATAATTATATAAGAGTGCATATCTCATATTCCTTTCACCGTATTTTTTAATTCAGTTGGAACAAATGTGGGCGATGTCATGATCTGGGAGGTTGGTGGTCATGAAAGGATTGCTATTAGAAATTTTAAAGTCTGGGATCTTTCAGCATGTCCAGTGCCTTTACAGATTTGGCTTCTGTTGCGTTGCATTGGGCTCCCATTAAACATTTCTTGTTAG

mRNA sequence

GGGGTTGTAGTTTTACACTCAGAATTTGAAATTTCTAACTCTGTCAAGTTTTGGGATTAGGATTGCTGTTCTTTGGGCGTCCTCAGAGTCGGAAAGTTGAAGGTGTGGCTGGGTGAGAACCTTCATTGAAATAAGATTTGCTTAAGAAAGAGGAAGAAAAAGAAGAGGAAGTAATGGACGAATTTCAACAACATTCACATGTCAAGAGTATGAATTTTCATCCACAACAACAAACTATACTACTTGTTGGAACAAATGTGGGCGATGTCATGATCTGGGAGGTTGGTGGTCATGAAAGGATTGCTATTAGAAATTTTAAAGTCTGGGATCTTTCAGCATGTCCAGTGCCTTTACAGATTTGGCTTCTGTTGCGTTGCATTGGGCTCCCATTAAACATTTCTTGTTAG

Coding sequence (CDS)

ATGGACGAATTTCAACAACATTCACATGTCAAGAGTATGAATTTTCATCCACAACAACAAACTATACTACTTGTTGGAACAAATGTGGGCGATGTCATGATCTGGGAGGTTGGTGGTCATGAAAGGATTGCTATTAGAAATTTTAAAGTCTGGGATCTTTCAGCATGTCCAGTGCCTTTACAGATTTGGCTTCTGTTGCGTTGCATTGGGCTCCCATTAAACATTTCTTGTTAG

Protein sequence

MDEFQQHSHVKSMNFHPQQQTILLVGTNVGDVMIWEVGGHERIAIRNFKVWDLSACPVPLQIWLLLRCIGLPLNISC

Homology

[Close]

BLAST of CsGy7G013570 vs. NCBI nr
Match: XP_008456943.1 (PREDICTED: topless-related protein 4-like isoform X1 [Cucumis melo] >XP_008456951.1 PREDICTED: topless-related protein 4-like isoform X1 [Cucumis melo] >XP_008456959.1 PREDICTED: topless-related protein 4-like isoform X1 [Cucumis melo])

HSP 1 Score: 107.8 bits (268), Expect = 1.6e-20
Identity = 51/56 (91.07%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 6   QHSHVKSMNFHPQQQTILLVGTNVGDVMIWEVGGHERIAIRNFKVWDLSACPVPLQ 62
           Q S VKSM+FHPQQQTILLVGTNVGDVMIWEVGG ERIAIRNFKVWDLSAC VPLQ
Sbjct: 355 QGSIVKSMDFHPQQQTILLVGTNVGDVMIWEVGGRERIAIRNFKVWDLSACSVPLQ 410

[Close]

BLAST of CsGy7G013570 vs. NCBI nr
Match: XP_008456966.1 (PREDICTED: topless-related protein 4-like isoform X2 [Cucumis melo])

HSP 1 Score: 107.8 bits (268), Expect = 1.6e-20
Identity = 51/56 (91.07%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 6   QHSHVKSMNFHPQQQTILLVGTNVGDVMIWEVGGHERIAIRNFKVWDLSACPVPLQ 62
           Q S VKSM+FHPQQQTILLVGTNVGDVMIWEVGG ERIAIRNFKVWDLSAC VPLQ
Sbjct: 354 QGSIVKSMDFHPQQQTILLVGTNVGDVMIWEVGGRERIAIRNFKVWDLSACSVPLQ 409

[Close]

BLAST of CsGy7G013570 vs. NCBI nr
Match: XP_008456972.1 (PREDICTED: topless-related protein 4-like isoform X3 [Cucumis melo])

HSP 1 Score: 107.8 bits (268), Expect = 1.6e-20
Identity = 51/56 (91.07%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 6   QHSHVKSMNFHPQQQTILLVGTNVGDVMIWEVGGHERIAIRNFKVWDLSACPVPLQ 62
           Q S VKSM+FHPQQQTILLVGTNVGDVMIWEVGG ERIAIRNFKVWDLSAC VPLQ
Sbjct: 355 QGSIVKSMDFHPQQQTILLVGTNVGDVMIWEVGGRERIAIRNFKVWDLSACSVPLQ 410

[Close]

BLAST of CsGy7G013570 vs. NCBI nr
Match: XP_008456978.1 (PREDICTED: topless-related protein 4-like isoform X4 [Cucumis melo])

HSP 1 Score: 107.8 bits (268), Expect = 1.6e-20
Identity = 51/56 (91.07%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 6   QHSHVKSMNFHPQQQTILLVGTNVGDVMIWEVGGHERIAIRNFKVWDLSACPVPLQ 62
           Q S VKSM+FHPQQQTILLVGTNVGDVMIWEVGG ERIAIRNFKVWDLSAC VPLQ
Sbjct: 354 QGSIVKSMDFHPQQQTILLVGTNVGDVMIWEVGGRERIAIRNFKVWDLSACSVPLQ 409

[Close]

BLAST of CsGy7G013570 vs. NCBI nr
Match: XP_022937903.1 (topless-related protein 4-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 107.8 bits (268), Expect = 1.6e-20
Identity = 51/56 (91.07%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 6   QHSHVKSMNFHPQQQTILLVGTNVGDVMIWEVGGHERIAIRNFKVWDLSACPVPLQ 62
           Q S VKSM+FHPQQQTILLVGTNVGDVMIWEVGG ERIAIRNFKVWDLSAC VPLQ
Sbjct: 354 QGSVVKSMDFHPQQQTILLVGTNVGDVMIWEVGGRERIAIRNFKVWDLSACSVPLQ 409

[Close]

BLAST of CsGy7G013570 vs. TAIR10
Match: AT3G15880.2 (WUS-interacting protein 2)

HSP 1 Score: 84.0 bits (206), Expect = 4.5e-17
Identity = 36/56 (64.29%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 6   QHSHVKSMNFHPQQQTILLVGTNVGDVMIWEVGGHERIAIRNFKVWDLSACPVPLQ 62
           Q S +KSM+FHP QQT+LLVGTN+GD+ IWEVG  E++  R+FKVWDL+ C V LQ
Sbjct: 356 QGSAIKSMDFHPVQQTMLLVGTNLGDIAIWEVGSREKLVSRSFKVWDLATCTVNLQ 411

[Close]

BLAST of CsGy7G013570 vs. TAIR10
Match: AT1G15750.1 (Transducin family protein / WD-40 repeat family protein)

HSP 1 Score: 80.1 bits (196), Expect = 6.6e-16
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 0


Query: 6   QHSHVKSMNFHPQQQTILLVGTNVGDVMIWEVGGHERIAIRNFKVWDLSACPVPLQIWLL 65
           Q S   SM+FHP +QT+LLVGTNVGD+ +WEVG  ER+  + FKVWDLS C +PLQ  L+
Sbjct: 354 QGSSPMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALV 413

[Close]

BLAST of CsGy7G013570 vs. TAIR10
Match: AT1G80490.2 (TOPLESS-related 1)

HSP 1 Score: 80.1 bits (196), Expect = 6.6e-16
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 0


Query: 6   QHSHVKSMNFHPQQQTILLVGTNVGDVMIWEVGGHERIAIRNFKVWDLSACPVPLQIWLL 65
           Q S   SM+FHP +QT+LLVGTNVGD+ +WEVG  ER+  + FKVWDLS C +PLQ  L+
Sbjct: 354 QGSSPMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALV 413

[Close]

BLAST of CsGy7G013570 vs. TAIR10
Match: AT3G16830.1 (TOPLESS-related 2)

HSP 1 Score: 63.2 bits (152), Expect = 8.3e-11
Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 0


Query: 5   QQHSHVKSMNFHPQQQTILLVGTNVGDVMIWEVGGHERIAIRNFKVWDLSACPVPLQ 62
           +Q S V SM+FHP   T+L VG + G+V +WEVG  E++    FK+W+++AC V  Q
Sbjct: 345 RQGSVVISMDFHPSHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQ 401

[Close]

BLAST of CsGy7G013570 vs. TAIR10
Match: AT5G27030.2 (TOPLESS-related 3)

HSP 1 Score: 62.8 bits (151), Expect = 1.1e-10
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 6   QHSHVKSMNFHPQQQTILLVGTNVGDVMIWEVGGHERIAIRNFKVWDLSAC 57
           Q S V SM F+P Q T+LLVG+  G++ +WE+   ER+  R FK+WD+S C
Sbjct: 344 QGSTVTSMEFYPMQNTLLLVGSATGEITLWELAARERLVSRPFKIWDMSNC 394

[Close]

BLAST of CsGy7G013570 vs. Swiss-Prot
Match: sp|Q0J7U6|TPR2_ORYSJ (Protein TPR2 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR2 PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 4.3e-17
Identity = 40/60 (66.67%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 6   QHSHVKSMNFHPQQQTILLVGTNVGDVMIWEVGGHERIAIRNFKVWDLSACPVPLQIWLL 65
           Q S+V S++FHP QQTILLVGTNVGD+ IWEVG  ERIA + FKVWD+S+C +PLQ  L+
Sbjct: 345 QGSNVMSLDFHPVQQTILLVGTNVGDIGIWEVGSRERIAHKTFKVWDISSCTLPLQAALM 404

[Close]

BLAST of CsGy7G013570 vs. Swiss-Prot
Match: sp|Q27GK7|TPR4_ARATH (Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2)

HSP 1 Score: 84.0 bits (206), Expect = 8.2e-16
Identity = 36/56 (64.29%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 6   QHSHVKSMNFHPQQQTILLVGTNVGDVMIWEVGGHERIAIRNFKVWDLSACPVPLQ 62
           Q S +KSM+FHP QQT+LLVGTN+GD+ IWEVG  E++  R+FKVWDL+ C V LQ
Sbjct: 356 QGSAIKSMDFHPVQQTMLLVGTNLGDIAIWEVGSREKLVSRSFKVWDLATCTVNLQ 411

[Close]

BLAST of CsGy7G013570 vs. Swiss-Prot
Match: sp|Q10NY2|TPR3_ORYSJ (Protein TPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR3 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 9.1e-15
Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 6   QHSHVKSMNFHPQQQTILLVGTNVGDVMIWEVGGHERIAIRNFKVWDLSACPVPLQIWLL 65
           Q S   SM+FHP QQT+LLVGTNVGD+ +W+VG  ER+ +RNFKVWDL+ C + LQ  L+
Sbjct: 349 QGSTPMSMDFHPVQQTLLLVGTNVGDIGLWDVGTKERLVLRNFKVWDLTKCSMALQASLV 408

[Close]

BLAST of CsGy7G013570 vs. Swiss-Prot
Match: sp|Q94AI7|TPL_ARATH (Protein TOPLESS OS=Arabidopsis thaliana OX=3702 GN=TPL PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.2e-14
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 0


Query: 6   QHSHVKSMNFHPQQQTILLVGTNVGDVMIWEVGGHERIAIRNFKVWDLSACPVPLQIWLL 65
           Q S   SM+FHP +QT+LLVGTNVGD+ +WEVG  ER+  + FKVWDLS C +PLQ  L+
Sbjct: 354 QGSSPMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALV 413

[Close]

BLAST of CsGy7G013570 vs. Swiss-Prot
Match: sp|Q0WV90|TPR1_ARATH (Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3)

HSP 1 Score: 80.1 bits (196), Expect = 1.2e-14
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 0


Query: 6   QHSHVKSMNFHPQQQTILLVGTNVGDVMIWEVGGHERIAIRNFKVWDLSACPVPLQIWLL 65
           Q S   SM+FHP +QT+LLVGTNVGD+ +WEVG  ER+  + FKVWDLS C +PLQ  L+
Sbjct: 354 QGSSPMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALV 413

[Close]

BLAST of CsGy7G013570 vs. TrEMBL
Match: tr|A0A1S3C4D3|A0A1S3C4D3_CUCME (topless-related protein 4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496740 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.1e-20
Identity = 51/56 (91.07%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 6   QHSHVKSMNFHPQQQTILLVGTNVGDVMIWEVGGHERIAIRNFKVWDLSACPVPLQ 62
           Q S VKSM+FHPQQQTILLVGTNVGDVMIWEVGG ERIAIRNFKVWDLSAC VPLQ
Sbjct: 355 QGSIVKSMDFHPQQQTILLVGTNVGDVMIWEVGGRERIAIRNFKVWDLSACSVPLQ 410

[Close]

BLAST of CsGy7G013570 vs. TrEMBL
Match: tr|A0A1S3C417|A0A1S3C417_CUCME (topless-related protein 4-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC103496740 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.1e-20
Identity = 51/56 (91.07%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 6   QHSHVKSMNFHPQQQTILLVGTNVGDVMIWEVGGHERIAIRNFKVWDLSACPVPLQ 62
           Q S VKSM+FHPQQQTILLVGTNVGDVMIWEVGG ERIAIRNFKVWDLSAC VPLQ
Sbjct: 354 QGSIVKSMDFHPQQQTILLVGTNVGDVMIWEVGGRERIAIRNFKVWDLSACSVPLQ 409

[Close]

BLAST of CsGy7G013570 vs. TrEMBL
Match: tr|A0A1S3C407|A0A1S3C407_CUCME (topless-related protein 4-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496740 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.1e-20
Identity = 51/56 (91.07%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 6   QHSHVKSMNFHPQQQTILLVGTNVGDVMIWEVGGHERIAIRNFKVWDLSACPVPLQ 62
           Q S VKSM+FHPQQQTILLVGTNVGDVMIWEVGG ERIAIRNFKVWDLSAC VPLQ
Sbjct: 354 QGSIVKSMDFHPQQQTILLVGTNVGDVMIWEVGGRERIAIRNFKVWDLSACSVPLQ 409

[Close]

BLAST of CsGy7G013570 vs. TrEMBL
Match: tr|A0A1S3C412|A0A1S3C412_CUCME (topless-related protein 4-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103496740 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.1e-20
Identity = 51/56 (91.07%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 6   QHSHVKSMNFHPQQQTILLVGTNVGDVMIWEVGGHERIAIRNFKVWDLSACPVPLQ 62
           Q S VKSM+FHPQQQTILLVGTNVGDVMIWEVGG ERIAIRNFKVWDLSAC VPLQ
Sbjct: 355 QGSIVKSMDFHPQQQTILLVGTNVGDVMIWEVGGRERIAIRNFKVWDLSACSVPLQ 410

[Close]

BLAST of CsGy7G013570 vs. TrEMBL
Match: tr|A0A0A0LG07|A0A0A0LG07_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G007420 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.5e-19
Identity = 49/58 (84.48%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 6   QHSHVKSMNFHPQQQTILLVGTNVGDVMIWEVGGHERIAIRNFKVWDLSACPVPLQIW 64
           Q S VKSM+FHPQQQTILLVGTNVGDVMIWEVGG ERIAIRNFKVWDL+A  V LQ+W
Sbjct: 354 QGSVVKSMDFHPQQQTILLVGTNVGDVMIWEVGGRERIAIRNFKVWDLAARSVALQVW 411

The following BLAST results are available for this feature:

BLAST of CsGy7G013570 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008456943.1	1.6e-20	91.07	PREDICTED: topless-related protein 4-like isoform X1 [Cucumis melo] >XP_00845695...	[more]
XP_008456966.1	1.6e-20	91.07	PREDICTED: topless-related protein 4-like isoform X2 [Cucumis melo]	[more]
XP_008456972.1	1.6e-20	91.07	PREDICTED: topless-related protein 4-like isoform X3 [Cucumis melo]	[more]
XP_008456978.1	1.6e-20	91.07	PREDICTED: topless-related protein 4-like isoform X4 [Cucumis melo]	[more]
XP_022937903.1	1.6e-20	91.07	topless-related protein 4-like isoform X2 [Cucurbita moschata]	[more]

BLAST of CsGy7G013570 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15880.2	4.5e-17	64.29	WUS-interacting protein 2	[more]
AT1G15750.1	6.6e-16	60.00	Transducin family protein / WD-40 repeat family protein	[more]
AT1G80490.2	6.6e-16	60.00	TOPLESS-related 1	[more]
AT3G16830.1	8.3e-11	45.61	TOPLESS-related 2	[more]
AT5G27030.2	1.1e-10	49.02	TOPLESS-related 3	[more]

BLAST of CsGy7G013570 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q0J7U6\|TPR2_ORYSJ	4.3e-17	66.67	Protein TPR2 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR2 PE=1 SV=1	[more]
sp\|Q27GK7\|TPR4_ARATH	8.2e-16	64.29	Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2	[more]
sp\|Q10NY2\|TPR3_ORYSJ	9.1e-15	60.00	Protein TPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR3 PE=1 SV=1	[more]
sp\|Q94AI7\|TPL_ARATH	1.2e-14	60.00	Protein TOPLESS OS=Arabidopsis thaliana OX=3702 GN=TPL PE=1 SV=1	[more]
sp\|Q0WV90\|TPR1_ARATH	1.2e-14	60.00	Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3	[more]

BLAST of CsGy7G013570 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C4D3\|A0A1S3C4D3_CUCME	1.1e-20	91.07	topless-related protein 4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10349674...	[more]
tr\|A0A1S3C417\|A0A1S3C417_CUCME	1.1e-20	91.07	topless-related protein 4-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC10349674...	[more]
tr\|A0A1S3C407\|A0A1S3C407_CUCME	1.1e-20	91.07	topless-related protein 4-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10349674...	[more]
tr\|A0A1S3C412\|A0A1S3C412_CUCME	1.1e-20	91.07	topless-related protein 4-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC10349674...	[more]
tr\|A0A0A0LG07\|A0A0A0LG07_CUCSA	1.5e-19	84.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G007420 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR027728	Topless_fam
IPR015943	WD40/YVTN_repeat-like_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G013570.1	CsGy7G013570.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	G3DSA:2.130.10.10		coord: 3..58 e-value: 2.5E-5 score: 25.5
None	No IPR available	PANTHER	PTHR44083:SF5	SUBFAMILY NOT NAMED	coord: 4..65
IPR027728	Topless family	PANTHER	PTHR44083	FAMILY NOT NAMED	coord: 4..65

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy7G013570	Watermelon (Charleston Gray)	cgybwcgB485
CsGy7G013570	Watermelon (97103) v1	cgybwmB529
CsGy7G013570	Wild cucumber (PI 183967)	cgybcpiB331
CsGy7G013570	Silver-seed gourd	carcgybB0012
CsGy7G013570	Silver-seed gourd	carcgybB0095
CsGy7G013570	Cucumber (Chinese Long) v3	cgybcucB347
CsGy7G013570	Watermelon (97103) v2	cgybwmbB542
CsGy7G013570	Wax gourd	cgybwgoB674
CsGy7G013570	Cucurbita maxima (Rimu)	cgybcmaB920
CsGy7G013570	Cucurbita maxima (Rimu)	cgybcmaB973
CsGy7G013570	Cucurbita moschata (Rifu)	cgybcmoB903
CsGy7G013570	Cucurbita moschata (Rifu)	cgybcmoB955
CsGy7G013570	Cucurbita pepo (Zucchini)	cgybcpeB900
CsGy7G013570	Cucurbita pepo (Zucchini)	cgybcpeB908
CsGy7G013570	Cucumber (Chinese Long) v2	cgybcuB323
CsGy7G013570	Bottle gourd (USVL1VR-Ls)	cgyblsiB472
CsGy7G013570	Melon (DHL92) v3.5.1	cgybmeB462
CsGy7G013570	Melon (DHL92) v3.5.1	cgybmeB478
CsGy7G013570	Melon (DHL92) v3.6.1	cgybmedB456
CsGy7G013570	Melon (DHL92) v3.6.1	cgybmedB460
CsGy7G013570	Melon (DHL92) v3.6.1	cgybmedB474