CsGy7G010550 (gene) Cucumber (Gy14) v2

Overview
NameCsGy7G010550
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionZinc finger CCCH domain-containing protein 37
LocationChr7 : 13284192 .. 13285932 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGTGCTGGAGAGGGTGAAGGTTGTCATCTAATTGAGTAATCTCTAAAGGTTGTCATTAATCTGAGACTGAGTATTGAACATTGTGACGTAAGATATACTGTGTGAATACGAGTATTATTATGAAGAAGTGAACTTGGACATAGTTGGTGTTGGCACTTTTAAGAACTCTAAAGAAACTTAATTCGTTCAGGTTTGCCTAGTTTTCTAGTGATTATGTGGACTAAATATTTTACTGGTTGGAAAACTATTTTTCAAGTAATGATTTTATTAGTGTATCTGATGTTTTGAATTTTTTTTAGTATTTTAGATTTATATTCTTTTTATTACTCCTTCGAATCATTAAGTTAATGTATCAACTGAATTTATCTGCTACCAATATCTACAATGAATACGATAAATCACATTCTTCTAAAAGTAGGTTCAATTTTTACAAGTGAGCCTGGAAAACAATTTATCTTCTACCCTGGTATTAATGTTATTACAATTATCATTTGATGTTGATTTCTTTGATCGACTGTGATTAATGTTGTATAAAAACAAAGCTCGAGTCCTAGAAGAGACTCATGATTTTCCCCTCATGGGATGTGCCCTTCTCCTGTTGTGGAGCTTTCATTATTGAGTATATGAAAAATATAAAAGAAAAGATTTTATCACAAGACTTTTCTAGTTTGGAAGTGATTTACCTGTGGAGTTATCTTATTGTCTCGTGAACTTGGAGTGAGTTTATTTGACCAAATGAAGTATTCAATTGTGCGCAATTTTATAGGTAAACTAATGAACATCTGAAATAATCGACTAACTTGACAGGAGGCCATAATTTGTCCATATTATCTGAAAACTGGTACATGCAAGTATGGCACTACTTGCAAATTTGACCATCCACCTCCTGGAGAAGTGATGACAATGGCTGCCGTACAATCTGCTCCAGGAAAAGAAGGCGAAGATCGGATAGATGAATCAGTGGACGAACGGCTGTAGAGATTTTGGTGGAATTTGGAAATTTTAGGAATCTTTTGGTTTGGTATTTGTATGTTCCTTTATATAATGTCTTTCACAATCATTGTAGCTTTGTTTAAATAAATTGAAGCTGTGATTTCATAGTCGTGCATCGAAGTTATTCCTTGTATTTGACAGAGCAATACTTTTCCTTCCCTCCCTCCACCCCTTTCCCTCCTTTTGTAATGTTAATGTCCGCGTATTGATTTGACAAGTGAAATTGAGAAATGTCTTGATCGGTTTTATCTGTTTATTGGCTGTTTCCTTTTCTTATTTTTATTTTCTGAAATGGACTTCTGGTGATGGTTAGGAGTGAAATATTGATAAAATACTAAAAGAACATTAGTAAATGAGAAATGGATTGATAATTTAAACCTATTTTTCTTCCCAAATCCACTTTGAATTTCCTTTGATTCTTTTTCTTTTAATTTGCAGACATGAAAATTAGGAAGTCGGTTTTACTTGGTTTTGTTTGTTTTTTTCTTCTTTAAAACTAGTTGACATAGAATTTTTTTTCATATCGGATATGTATGATCTCTTGTTTTTAGTCTATCACGTTCACCTCTATCTTATGCAAAGCATTCAAACGCATGGTAAAATGTTCGGTAGTCAAAATTATCCTTACATCCATATCTCACACAAAGCATTCAAACCATGTGGTGGTGGTGTGGTGAAATGTGTGGAATCAAATTAATCATTTATTTGTATGTCATTTTTACAGATGGAAAAATAGCAAGTAG

mRNA sequence

ATGACTGTGCTGGAGAGGGTGAAGGAGGCCATAATTTGTCCATATTATCTGAAAACTGGTACATGCAAGTATGGCACTACTTGCAAATTTGACCATCCACCTCCTGGAGAAGTGATGACAATGGCTGCCGTACAATCTGCTCCAGGAAAAGAAGGCGAAGATCGGATAGATGAATCAGTGGACGAACGGCTCTGTGATTTCATAGTCGTGCATCGAAGTTATTCCTTGTATTTGACAGAGCAATACTTTTCCTTCCCTCCCTCCACCCCTTTCCCTCCTTTTGTAATGTTAATATGGAAAAATAGCAAGTAG

Coding sequence (CDS)

ATGACTGTGCTGGAGAGGGTGAAGGAGGCCATAATTTGTCCATATTATCTGAAAACTGGTACATGCAAGTATGGCACTACTTGCAAATTTGACCATCCACCTCCTGGAGAAGTGATGACAATGGCTGCCGTACAATCTGCTCCAGGAAAAGAAGGCGAAGATCGGATAGATGAATCAGTGGACGAACGGCTCTGTGATTTCATAGTCGTGCATCGAAGTTATTCCTTGTATTTGACAGAGCAATACTTTTCCTTCCCTCCCTCCACCCCTTTCCCTCCTTTTGTAATGTTAATATGGAAAAATAGCAAGTAG

Protein sequence

MTVLERVKEAIICPYYLKTGTCKYGTTCKFDHPPPGEVMTMAAVQSAPGKEGEDRIDESVDERLCDFIVVHRSYSLYLTEQYFSFPPSTPFPPFVMLIWKNSK
Homology
[Close]
BLAST of CsGy7G010550 vs. NCBI nr
Match: POE58469.1 (zinc finger ccch domain-containing protein 37 [Quercus suber])

HSP 1 Score: 82.0 bits (201), Expect = 1.3e-12
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 0 

Query: 4   LERVKEAIICPYYLKTGTCKYGTTCKFDHPPPGEVMTMAAVQ-SAPGKEGEDRIDESVDE 63
           L R + A++CPYYLKTGTCKYG TCKFDHPPPGEVM MA  Q ++   EG+++  E V E
Sbjct: 302 LPRREGAVLCPYYLKTGTCKYGATCKFDHPPPGEVMAMATSQGTSTAVEGDEKEAELVQE 361

[Close]
BLAST of CsGy7G010550 vs. NCBI nr
Match: XP_023894428.1 (zinc finger CCCH domain-containing protein 37-like [Quercus suber])

HSP 1 Score: 82.0 bits (201), Expect = 1.3e-12
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 0 

Query: 4   LERVKEAIICPYYLKTGTCKYGTTCKFDHPPPGEVMTMAAVQ-SAPGKEGEDRIDESVDE 63
           L R + A++CPYYLKTGTCKYG TCKFDHPPPGEVM MA  Q ++   EG+++  E V E
Sbjct: 390 LPRREGAVLCPYYLKTGTCKYGATCKFDHPPPGEVMAMATSQGTSTAVEGDEKEAELVQE 449

[Close]
BLAST of CsGy7G010550 vs. NCBI nr
Match: XP_023903185.1 (zinc finger CCCH domain-containing protein 37-like isoform X1 [Quercus suber])

HSP 1 Score: 82.0 bits (201), Expect = 1.3e-12
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 0 

Query: 4   LERVKEAIICPYYLKTGTCKYGTTCKFDHPPPGEVMTMAAVQ-SAPGKEGEDRIDESVDE 63
           L R + A++CPYYLKTGTCKYG TCKFDHPPPGEVM MA  Q ++   EG+++  E V E
Sbjct: 457 LPRREGAVLCPYYLKTGTCKYGATCKFDHPPPGEVMAMATSQGTSTAVEGDEKEAELVQE 516

[Close]
BLAST of CsGy7G010550 vs. NCBI nr
Match: XP_023903186.1 (zinc finger CCCH domain-containing protein 37-like isoform X2 [Quercus suber])

HSP 1 Score: 82.0 bits (201), Expect = 1.3e-12
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 0 

Query: 4   LERVKEAIICPYYLKTGTCKYGTTCKFDHPPPGEVMTMAAVQ-SAPGKEGEDRIDESVDE 63
           L R + A++CPYYLKTGTCKYG TCKFDHPPPGEVM MA  Q ++   EG+++  E V E
Sbjct: 299 LPRREGAVLCPYYLKTGTCKYGATCKFDHPPPGEVMAMATSQGTSTAVEGDEKEAELVQE 358

[Close]
BLAST of CsGy7G010550 vs. NCBI nr
Match: XP_020207375.1 (zinc finger CCCH domain-containing protein 37 isoform X1 [Cajanus cajan] >KYP33982.1 Zinc finger CCCH domain-containing protein 37 [Cajanus cajan])

HSP 1 Score: 81.3 bits (199), Expect = 2.2e-12
Identity = 36/55 (65.45%), Postives = 39/55 (70.91%), Query Frame = 0 

Query: 4   LERVKEAIICPYYLKTGTCKYGTTCKFDHPPPGEVMTMAAVQSAPGKEGEDRIDE 59
           L R + A+ICPYYLKTGTCK+G TCKFDHPPPGEVM MA  Q      GE   DE
Sbjct: 427 LPRREGAVICPYYLKTGTCKFGATCKFDHPPPGEVMEMAKSQGTSANGGEAEDDE 481

[Close]
BLAST of CsGy7G010550 vs. TAIR10
Match: AT3G12680.1 (floral homeotic protein (HUA1))

HSP 1 Score: 68.2 bits (165), Expect = 3.5e-12
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 0 

Query: 6   RVKEAIICPYYLKTGTCKYGTTCKFDHPPPGEVM 40
           R + A+ CPYY+KTGTCKYG TCKFDHPPPGEVM
Sbjct: 472 RREGALNCPYYMKTGTCKYGATCKFDHPPPGEVM 505

[Close]
BLAST of CsGy7G010550 vs. TAIR10
Match: AT5G63260.2 (Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 45.8 bits (107), Expect = 1.8e-05
Identity = 20/52 (38.46%), Postives = 34/52 (65.38%), Query Frame = 0 

Query: 13  CPYYLKTGTCKYGTTCKFDHPPPGEVMTMAAVQSAPGKEGEDRID-ESVDER 64
           C +Y++TG+CKYG++CKF+HP   ++  +  + S   + G++ I  E V ER
Sbjct: 107 CSFYMRTGSCKYGSSCKFNHPVRRKLQDLKFLGSMRTRNGKEYIGRERVRER 158

[Close]
BLAST of CsGy7G010550 vs. TAIR10
Match: AT2G47850.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 44.7 bits (104), Expect = 4.1e-05
Identity = 16/21 (76.19%), Postives = 18/21 (85.71%), Query Frame = 0 

Query: 13  CPYYLKTGTCKYGTTCKFDHP 34
           C YYLKTG CK+GT+CKF HP
Sbjct: 295 CQYYLKTGDCKFGTSCKFHHP 315

[Close]
BLAST of CsGy7G010550 vs. TAIR10
Match: AT3G02830.1 (zinc finger protein 1)

HSP 1 Score: 43.1 bits (100), Expect = 1.2e-04
Identity = 14/31 (45.16%), Postives = 23/31 (74.19%), Query Frame = 0 

Query: 13 CPYYLKTGTCKYGTTCKFDHPPPGEVMTMAA 44
          C YY++TG C++G+TC+F+HP   E++   A
Sbjct: 46 CSYYIRTGLCRFGSTCRFNHPRDRELVIATA 76

[Close]
BLAST of CsGy7G010550 vs. TAIR10
Match: AT5G16540.1 (zinc finger nuclease 3)

HSP 1 Score: 42.7 bits (99), Expect = 1.6e-04
Identity = 17/37 (45.95%), Postives = 22/37 (59.46%), Query Frame = 0 

Query: 13  CPYYLKTGTCKYGTTCKFDHPPPGEVMTMAAVQSAPG 50
           C +Y+KTG CK+GT CKF HP   +      V S+ G
Sbjct: 249 CQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVLSSVG 285

[Close]
BLAST of CsGy7G010550 vs. Swiss-Prot
Match: sp|Q941Q3|C3H37_ARATH (Zinc finger CCCH domain-containing protein 37 OS=Arabidopsis thaliana OX=3702 GN=HUA1 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 6.2e-11
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 0 

Query: 6   RVKEAIICPYYLKTGTCKYGTTCKFDHPPPGEVM 40
           R + A+ CPYY+KTGTCKYG TCKFDHPPPGEVM
Sbjct: 472 RREGALNCPYYMKTGTCKYGATCKFDHPPPGEVM 505

[Close]
BLAST of CsGy7G010550 vs. Swiss-Prot
Match: sp|Q5ZDJ6|C3H8_ORYSJ (Zinc finger CCCH domain-containing protein 8 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0616400 PE=2 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 1.4e-07
Identity = 20/36 (55.56%), Postives = 28/36 (77.78%), Query Frame = 0 

Query: 4   LERVKEAIICPYYLKTGTCKYGTTCKFDHPPPGEVM 40
           L R ++A++C +Y+KTG CK+G  CKFDHPPP E +
Sbjct: 419 LPRREDAVVCAFYMKTGVCKFGMQCKFDHPPPQEAI 454

[Close]
BLAST of CsGy7G010550 vs. Swiss-Prot
Match: sp|Q5Z5Q3|C3H43_ORYSJ (Zinc finger CCCH domain-containing protein 43 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0520600 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.1e-04
Identity = 16/25 (64.00%), Postives = 19/25 (76.00%), Query Frame = 0 

Query: 12  ICPYYLKTGTCKYGTTCKFDHPPPG 37
           +C YY+  G CK+GT CKFDHP PG
Sbjct: 162 LCSYYMNRGICKFGTNCKFDHPDPG 186

[Close]
BLAST of CsGy7G010550 vs. Swiss-Prot
Match: sp|Q2QT65|C3H66_ORYSJ (Zinc finger CCCH domain-containing protein 66 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0405100 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.5e-04
Identity = 16/31 (51.61%), Postives = 23/31 (74.19%), Query Frame = 0 

Query: 13  CPYYLKTGTCKYGTTCKFDHPPPGEVMTMAA 44
           C YY++TG C++G TCKF+HPP  ++   AA
Sbjct: 72  CSYYMRTGLCRFGMTCKFNHPPNRKLAVAAA 102

[Close]
BLAST of CsGy7G010550 vs. Swiss-Prot
Match: sp|Q84W91|C3H32_ARATH (Zinc finger CCCH domain-containing protein 32 OS=Arabidopsis thaliana OX=3702 GN=At2g47850 PE=2 SV=2)

HSP 1 Score: 44.7 bits (104), Expect = 7.4e-04
Identity = 16/21 (76.19%), Postives = 18/21 (85.71%), Query Frame = 0 

Query: 13  CPYYLKTGTCKYGTTCKFDHP 34
           C YYLKTG CK+GT+CKF HP
Sbjct: 295 CQYYLKTGDCKFGTSCKFHHP 315

[Close]
BLAST of CsGy7G010550 vs. TrEMBL
Match: tr|A0A2P4HQB4|A0A2P4HQB4_QUESU (Zinc finger ccch domain-containing protein 37 OS=Quercus suber OX=58331 GN=CFP56_53874 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 8.4e-13
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 0 

Query: 4   LERVKEAIICPYYLKTGTCKYGTTCKFDHPPPGEVMTMAAVQ-SAPGKEGEDRIDESVDE 63
           L R + A++CPYYLKTGTCKYG TCKFDHPPPGEVM MA  Q ++   EG+++  E V E
Sbjct: 302 LPRREGAVLCPYYLKTGTCKYGATCKFDHPPPGEVMAMATSQGTSTAVEGDEKEAELVQE 361

[Close]
BLAST of CsGy7G010550 vs. TrEMBL
Match: tr|A0A151QUM6|A0A151QUM6_CAJCA (Zinc finger CCCH domain-containing protein 37 OS=Cajanus cajan OX=3821 GN=KK1_045110 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.4e-12
Identity = 36/55 (65.45%), Postives = 39/55 (70.91%), Query Frame = 0 

Query: 4   LERVKEAIICPYYLKTGTCKYGTTCKFDHPPPGEVMTMAAVQSAPGKEGEDRIDE 59
           L R + A+ICPYYLKTGTCK+G TCKFDHPPPGEVM MA  Q      GE   DE
Sbjct: 427 LPRREGAVICPYYLKTGTCKFGATCKFDHPPPGEVMEMAKSQGTSANGGEAEDDE 481

[Close]
BLAST of CsGy7G010550 vs. TrEMBL
Match: tr|A0A103YJQ9|A0A103YJQ9_CYNCS (Zinc finger, CCCH-type OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_011258 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.9e-12
Identity = 35/51 (68.63%), Postives = 39/51 (76.47%), Query Frame = 0 

Query: 4   LERVKEAIICPYYLKTGTCKYGTTCKFDHPPPGEVMTMAAVQSAPGKEGED 55
           L R + AI CPYY+KTG CKYG TCKFDHPPPGEVM  A  Q A G+EG+D
Sbjct: 446 LPRREGAINCPYYMKTGACKYGATCKFDHPPPGEVMAGATSQGASGEEGKD 496

[Close]
BLAST of CsGy7G010550 vs. TrEMBL
Match: tr|A0A2N9H9N5|A0A2N9H9N5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS36744 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.5e-12
Identity = 35/51 (68.63%), Postives = 39/51 (76.47%), Query Frame = 0 

Query: 4   LERVKEAIICPYYLKTGTCKYGTTCKFDHPPPGEVMTMAAVQSAPGKEGED 55
           L R + A+ICPYYLKTGTCK+G TCKFDHPPPGEVM MAA Q      GE+
Sbjct: 432 LPRREGAVICPYYLKTGTCKFGATCKFDHPPPGEVMAMAASQGTSTAIGEE 482

[Close]
BLAST of CsGy7G010550 vs. TrEMBL
Match: tr|D7T0Z4|D7T0Z4_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_19s0085g01180 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.5e-12
Identity = 38/58 (65.52%), Postives = 41/58 (70.69%), Query Frame = 0 

Query: 6   RVKEAIICPYYLKTGTCKYGTTCKFDHPPPGEVMTMAAVQSAPGKEGED-RIDESVDE 63
           R +  IICP+YLKTGTCKYG TCKFDHPPPGEVM MA  Q A    GE+   DE  DE
Sbjct: 471 RREGTIICPFYLKTGTCKYGVTCKFDHPPPGEVMAMATSQGASTSAGEEANGDEKEDE 528

The following BLAST results are available for this feature:
BLAST of CsGy7G010550 vs. NCBI nr
Match NameE-valueIdentityDescription
POE58469.11.3e-1260.66zinc finger ccch domain-containing protein 37 [Quercus suber][more]
XP_023894428.11.3e-1260.66zinc finger CCCH domain-containing protein 37-like [Quercus suber][more]
XP_023903185.11.3e-1260.66zinc finger CCCH domain-containing protein 37-like isoform X1 [Quercus suber][more]
XP_023903186.11.3e-1260.66zinc finger CCCH domain-containing protein 37-like isoform X2 [Quercus suber][more]
XP_020207375.12.2e-1265.45zinc finger CCCH domain-containing protein 37 isoform X1 [Cajanus cajan] >KYP339... [more]
BLAST of CsGy7G010550 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G12680.13.5e-1279.41floral homeotic protein (HUA1)[more]
AT5G63260.21.8e-0538.46Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
AT2G47850.14.1e-0576.19Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
AT3G02830.11.2e-0445.16zinc finger protein 1[more]
AT5G16540.11.6e-0445.95zinc finger nuclease 3[more]
BLAST of CsGy7G010550 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q941Q3|C3H37_ARATH6.2e-1179.41Zinc finger CCCH domain-containing protein 37 OS=Arabidopsis thaliana OX=3702 GN... [more]
sp|Q5ZDJ6|C3H8_ORYSJ1.4e-0755.56Zinc finger CCCH domain-containing protein 8 OS=Oryza sativa subsp. japonica OX=... [more]
sp|Q5Z5Q3|C3H43_ORYSJ1.1e-0464.00Zinc finger CCCH domain-containing protein 43 OS=Oryza sativa subsp. japonica OX... [more]
sp|Q2QT65|C3H66_ORYSJ2.5e-0451.61Zinc finger CCCH domain-containing protein 66 OS=Oryza sativa subsp. japonica OX... [more]
sp|Q84W91|C3H32_ARATH7.4e-0476.19Zinc finger CCCH domain-containing protein 32 OS=Arabidopsis thaliana OX=3702 GN... [more]
BLAST of CsGy7G010550 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2P4HQB4|A0A2P4HQB4_QUESU8.4e-1360.66Zinc finger ccch domain-containing protein 37 OS=Quercus suber OX=58331 GN=CFP56... [more]
tr|A0A151QUM6|A0A151QUM6_CAJCA1.4e-1265.45Zinc finger CCCH domain-containing protein 37 OS=Cajanus cajan OX=3821 GN=KK1_04... [more]
tr|A0A103YJQ9|A0A103YJQ9_CYNCS1.9e-1268.63Zinc finger, CCCH-type OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_0112... [more]
tr|A0A2N9H9N5|A0A2N9H9N5_FAGSY2.5e-1268.63Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS36744 PE=4 SV=1[more]
tr|D7T0Z4|D7T0Z4_VITVI2.5e-1265.52Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_19s0085g01180 PE=4 SV=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR036855Znf_CCCH_sf
IPR000571Znf_CCCH
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0061158 3'-UTR-mediated mRNA destabilization
cellular_component GO:0005829 cytosol
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003730 mRNA 3'-UTR binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy7G010550.1CsGy7G010550.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 8..34
e-value: 3.8E-6
score: 36.4
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 12..34
e-value: 7.1E-11
score: 41.6
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 8..35
score: 15.356
NoneNo IPR availableGENE3DG3DSA:4.10.1000.10coord: 5..81
e-value: 2.7E-8
score: 35.7
NoneNo IPR availablePANTHERPTHR12547CCCH ZINC FINGER/TIS11-RELATEDcoord: 5..48
NoneNo IPR availablePANTHERPTHR12547:SF63ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37coord: 5..48
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILYSSF90229CCCH zinc fingercoord: 9..34

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy7G010550Watermelon (97103) v2cgybwmbB495
CsGy7G010550Watermelon (97103) v2cgybwmbB531
CsGy7G010550Wax gourdcgybwgoB642
CsGy7G010550Cucurbita maxima (Rimu)cgybcmaB946
CsGy7G010550Cucurbita moschata (Rifu)cgybcmoB929
CsGy7G010550Cucurbita pepo (Zucchini)cgybcpeB912
CsGy7G010550Cucumber (Chinese Long) v2cgybcuB323
CsGy7G010550Bottle gourd (USVL1VR-Ls)cgyblsiB468
CsGy7G010550Melon (DHL92) v3.5.1cgybmeB471
CsGy7G010550Melon (DHL92) v3.6.1cgybmedB468
CsGy7G010550Watermelon (Charleston Gray)cgybwcgB474
CsGy7G010550Watermelon (97103) v1cgybwmB515
CsGy7G010550Wild cucumber (PI 183967)cgybcpiB331
CsGy7G010550Silver-seed gourdcarcgybB0541
CsGy7G010550Cucumber (Chinese Long) v3cgybcucB345
CsGy7G010550Cucumber (Chinese Long) v3cgybcucB347