CsGy7G009470 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy7G009470
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	1,4-alpha-glucan branching enzyme, putative
Location	Chr7 : 11917220 .. 11923347 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGAGCAACAACTTCTCGTTTTCGCTTGCCAACCGACAGTGGGATCTTTTAGAAAAGGAAATGCATCATGATTTGTTTCTTTTTGATAAGGTGTACAGTTATTCTTCAACTTCGTTAAATTGAAATTGTCATGCAATTTGAATTGAAGTAAATGTTCTTGACCTTGAAGTCCCACAAATTTTTTACTATCCCATCTTAGTTTAATAAAAAAAGCTTACCTTTGTCCTTCTAGGAGCTGATGGGATTGGATGAGAATGAAAAAATACTGACAAGAAGTTTACCAAATGTTCACCACGTCAATGAAACTACCAAGGCAAGCTCTCTCCTTTTCCTTTTTCATTTGTAGTTCATTTTGTCTACTTTGACATTTACAGGTTTGTTACTTTGTTTTTTTTAAACGGTCCCACAAAGTACAAGAGAATTATACAGAGAGCAAAAGGACTAAAACAGATACAAACAATAGATAAATCAAACTCAACAATAACAACGAGCTAAACTAAATCCTCTAACCTGCAACCACGAAAGAAATCTAGAACCTAAACTAGGTACAAAATAATTAATTAAACCAGATGTCAAAAGGAACCCAAAGTAAGCTGACAACTTGCCCACAATAAGCTTTGAGATGAGTGAAGAGTGAAAAGTGAAGAGGGAACACCAAGAGAGCAACGAACAGCCTTGCTGAATCTTCACTAAGATAAAACCACAAAAACTGCTAAAAATAAAAATTGTTCAGCTGGTTGGAAACAGTTTGCAGCCACTACCATGTCTTTACATGAACGATTCAGGATCACATCGTTTGTACTAACTACAAAGTAGGCCGCATTCATAGTGTCCCTAAGATAAGGCGTCCAACCTTATTCGTACACTATAGACCGTTTTGGAGTATATACTCGAACTTGATCCACATCTATGTATCTACATAAAGCTCAGGTCTACACTAGATAGCCTTGGGACCTCAGTAAATGAATTGATGTATTAAGACTTAGCTTGATGTATTCCACACTCGAAAGCTATTTTTATTGTCATATATGTGTCTTTTTAGTCTACTCAATGAGTGTTCTATGCATCTCTAATGCATTTGTTGCACTAACAAGCGTCTGATAGATGTCCACCAAGTGTCAGAGTGTTCAAGTGTTCGACAGGGACACACTAGCCTAATTAAAGTGTGTATGCTTCTGAGGTGTCTATCATTAATAGAATCTGAAATTTTGAATTGGTTTGTAAAAATACTAATAGAAAGTGGATAGAAACATAGAAACTTAATTTTCAAAGACCAAAAACCAAAGGGATGGTGGACTTGGTCCAGGGGGATTAAGGAGGAAAGCATTTAGCAGTATTAGCCAAATGGGGTTGGTGTTACTTCTATGAAAAGGACTCTTTCTGGAGTCAAGTCATCCGAAGCATACATGGTAGTGATAAATTTAATTGGTACGCTTCCGGCCAATCAACCTATAGTCTCCGAAGCCCTTGGATTAACGTATCTAGAGTTTGGATGAAAGTTGAAGCTCTAGCACCATTCAAATTGGGGGATGAAAGTTGAAGCTCTAGCACCATTCAAATTGGGGGATGAAAGTTGAAGCTCTAGCACCATTCAAATTGGGGGATGAAAGAAGAATTGATCCATGGATTGACAAGCTGCCCTTGAAAATGATTTTCCCCAAACTTTACAAGATATCCCTCAATCCACAAGGTTCAATTGAAGACCACTAGGAATTTAATTCTTCTTCTTGGGTAGTTTCTTTTGGCCGGTTGTCAACAGAGGATGAAATTGAAGAATTTCAGAATTTACACAGCTTGATTTTCAGTAAGTTGGAAAACTTTCCAGACAAAACAGTTTGGTCTTTGGAGAGCACTGGAATTTTTACGGTAAAATCACTTGCCAATCATCACTCAATGTTGCCATTAGAAAGAGTTTAGAGATTCTTCAACGAAAGTTGCCAACCCACTGTTTGTCATCTTCAATCGATCCTCTGTGGAATTTGAATTCAAGTAAAGGTTCTTTATTTTGATATCTACTTCTAACAATGTTTTCAAAATCGATTTCAAGTTTTGAATAGTAGAAAAATTTTAGTTTCAAGAACTTATTTTTTTTATATAATTTAGCTAACAATTCTAACGCTACCATAAGAAAATGAAGAAGACTATTTGATGCAGTAATTGCAAAGCTAAGGAGTTTTTTATGAATAATACTTCTGATATATGATTTATTAATGAGTGGAGAAGCCTTTTTATACGCTGGAAGTTAACAAGAGTTGTTAGAAGTTAGTTATTTTAGAACTAACTTGGAGTTGAGTTGGTTTATTTATAACTAACTCAAGATACGAGATTAGTAACTCAAGATACACAAGCTTTAACTAAAGAATAACTAATCCTAAAATGCAAGAATGGTAATTTCAAGATACTCAAGAATTAGCTAAAGAAATACTCTAAAGAACTTAAAGAAACATCAATAAAGGAGGATGTTCTACATCACTAATATAAAAAAACATTGCGAAAATAACCAGAGTTTTCAAAAAGAAAAAACCAGAGTCTGAAAGGTTTCCAAACGGGCTCTAGTTGAGATTTAACTAAATATTTAGTTGACAATTGCATTTATTTTTATTTACATAAATATATTGCCAAACATTTTTAACAACTTGTTAAATTGAGATCCAGTTTCTACAAACGCACCTTTAGAAACGGCGAGGAAGATAACTCTTGGGTGGAATATTTTGATGAAGAGTTTAGCTGTTTGAATCAATACATTGTTTTTTCCATTTCAGGTAATATCTTATATTCGAGGTCCCTTCCTCTTCATATACAACTTCCATCCCACAGATTCTTTCGAAAGATACAGTGTTGGTGTCGAAGAAGCTGGAGAATATCGAGTAAGCAATACTTTGCTACCAATTTATAATTTCTGAAACTATAGATCTTGTTCAATAACGACTATCTTTTATTTTAAAAGTATTCACTTTTTAAAATATTTTTGAAATCTAAACAAAGTTTTTAAAAACTAAAAAATTTAGAAGTTATGATAGTTTCGAAAACAAAGAAAAAATTAGTAAATAAACATAATTGCTGATATGAACATAGCTCACTTCATCTACTTAAAGCATATATCCTCAACCAAGAGGTTAGATATTCGAATTTTCCAACCGTATGTTAGTGTTGCTAAACTCTAAAATACAAAATAAGCCAAAAGTAGAAGGAACTAAAAACAAAACACATTATCCTTCTGTGAAAATTATAAAATAGTCAATTTTACTCTTCAAATAAAAATCTTGTAGGCTTTATATAGATAAATTTATTTTTGCTCTCTTCGAAACACCCCGGCAAGTCTGATATTTTAATGCTCACAGATTATATTAAATACTGATGAAATTGAATATGGAGGTCAAGGGAATATAAAGCATGATCAATATCTTCAAAGAACTATAAGCCGAAGGTAATATTTTTTTGACTTTCTTGAAGATTTCCTTCGCTTTCCAGATTAATTTTCACAATCATCATGTGTTTCCATGTTTCCAGAATCGATGGCCTTCGAAACTGCCTAGAAGTGTCTCTGCCTTGTAGAACTGCACAGGTTAGTTAAATCTGTGAATGTTGTGTTTATGCATTAGCCTGGGTTATAATGTACTCGTTTGATAATGTTTTAAATTCTTGTTTCTCGTTTCTTCTCCTTCAATGAAGGAAAACAAAATTGCGTTCAGTAAGATTTTTCTTGTTTTTGTGGTTTCTTTTTTTATTGGAAAAGATAGAAATATGTTAGATAATCATTTCCATTTCTTGTTTAAGTTTTCAAAAGTAAAATCCAAAACTTTAATGTTATATTTCAAATATTTATCATGCATTTTAGAAGTAAAAAATGAAAAAATAAAGCTAGTTTAATTTATGTTTTGGAAAAATTGGAAACAGCAAAAAGAAACCAGAAACTTCATTTTGTCGTTTAAAAGTTTCTACACAATTTTGCCCATGTTTCTTATTTGGAAATGGGAGTGCTCGTGTTTCTTAGAACCTGTAAACAAGAAATAGAAACTAGAAACAAGAACATTGTCCAAACATTTGATATACATAAGGTTTCATTCTAAAATCAATTGGTAATAAGAGGAGCAACTCATATTTAAAGGTTGTGAAATTTCTCCGTCTTTTCAACTTGGGATTCTCAATGGGACTCCATTGATTCTAAAATTTTGAAATTAAATCCTTTGAGGACTTTTAACTAGTGGTCTATCATTGGTCATTTTCAGGTAAAAGTAGTCCTGACTTTTGATGATCTTGTATCACTTACAATCATTTTGCTAAGAATTCTTGCAGGACTCTTGTCAACTTCTATTTTTCTTATATAATTTACTAATTTAGTCCTGAATTTTGATGGTCGTGTCGATTTAATCTCTTGCTTAAGATATTGTGTCAGTTGGGGGACAACAATTATGAACACAATGCATTATTCAGTCTCTATGTTAACAACGCAAAGTACATACAACTATAGTTGAACGTTCAAGAACGTAACTGAAACTTGTTAAAGTTATTACATGACCGACCACCCAACTTCAATTTATACTTGAACCCATCCCGTATTACTGTCATCTCATGATGAAAAACTGATATGACACTTGCTTAAGATATTGTGCATGAAATCTGTTGTTTAGAAGTAGGTAGCTGAAGGGCCATCATGATCATGCCAACAACGCGTGAAAGTTCAAACCGAATTCATTTTCTATGAATATTTGCCCAATCTCTTTCTGTTTCTGTCGTGTAGGTTTACAAACTAAGTCGGATATTAAGAATATAAGCCATTTTGCACACATTGGAAGAAATTTGACTGAAGTTTGGCAAAGTTGTTAATCCATGTTCGCTAGAATGTCCTGCCCAAAAGAGCACTAAGCGAAGAGTCGAACACGAGCCTGATTTTCCAGTGCTGAGGTATTTTGTTGAATCAAAGCTTATTAGCTCAACTTTGTATTTATGAGATAGAATCAAGAAGTCAAATACGTTCTTGCCATCTTTCTCCTTGAGATCCTATGTGGAAAAATGAACAGTTCTTCAAACCAAGAAACATTGGACGAAGATTTTGCTATTTACGAGAAAGAATCATTGATTTTCAGCACTTCTAGTTTTAATATTCTGCTACAATTTTGACTGTGGTTCTGTTCTAAACAGCCAGGGTGGATTTGTTTGTTAAGTTGATCATAGTAAGATTAGTTCACTTTCTTTGTATTTCTTAATATTTAAATAAAGGGCAGTTAAAAACGTAAAAGTTGGCTTACATTGCCAAAATGAGTTCTAACTCTGCTAGCTTATGTTCTATTCATTTCGAATTTAGAGGTTCTATTCTCCTCGTATTGCCCAAAAAAATAATAATAATAATAAAGGGTAAGTAAGCATAGTTCATCAATGATCGAGTTGTGTCTAAAATGGTTGTGCTTTTCTTTTTTAATGCACCAATTTGTGAGGTGTATCAAGTCCTAAGAGTTGGAATATGATTCCACTTTCTACCATAGTCTATGAATCTCATGTTCATGTACTCTCCACCTTAGATTGAGGTATTTTAATCCTCTTACATAATAGATTCTCCATCTTAGTCTTGTACTTTTTGAACTATTTAAGTGCTTTAGATTTATGTTGTATTAGGTAAAGATGTCCATGTCTTGAATAATCATTGATAAAAGAGATGAAATATTCTTTTAACATTCATTAGACCAAAAGATTTGAATGTATAAGCCCTGGTGGTTTTTTTTTTTTTTTCTCTTGACTTTTCCAGTAAATAGTCTATTGGTCATGAGGCATGAGTCACATATTGGTAAGGTGTTCACTTTTAGTTAGTTTCTATTGAAATTTATGTGATCGGATCTTAAATATCAAAAGATAAGTATCATTGTTGGGACAAACTTTTTGTCTTAAATATTGTTTTGAATAGTTAAATGGTAAAAACGACTTTGATGCTAAAAGATTTAGCACGTACAGATTATCTTTAATAAAAGTTGAACAAATATTTAAGTCATTCTTTAAAATAATACTTTATTAAGAATAAAATTTAATGAATGAGTTTGTTCAATTAAACTATAAAATGAAATCAGGTCCCTCTAGAAAGTAGGAACCAAATAAGGGACGCCCAACAACTAATAACAATGCTCAAAAGATAA

mRNA sequence

ATGCCGAGCAACAACTTCTCGTTTTCGCTTGCCAACCGACAGTGGGATCTTTTAGAAAAGGAAATGCATCATGATTTGTTTCTTTTTGATAAGGAGCTGATGGGATTGGATGAGAATGAAAAAATACTGACAAGAAGTTTACCAAATGTTCACCACGTAATATCTTATATTCGAGGTCCCTTCCTCTTCATATACAACTTCCATCCCACAGATTCTTTCGAAAGATACAGTGTTGGTGTCGAAGAAGCTGGAGAATATCGAATTATATTAAATACTGATGAAATTGAATATGGAGGTCAAGGGAATATAAAGCATGATCAATATCTTCAAAGAACTATAAGCCGAAGCAAAAAGAAACCAGAAACTTCATTTTGTCGTTTAAAAGTTTCTACACAATTTTGCCCATGTTTCTTATTTGGAAATGGGAGTGCTCGTGTTTCTTAGAACCTGTAAACAAGAAATAGAAACTAGAAACAAGAACATTGTCCAAACATTTGATATACATAAGGTTTCATTCTAAAATCAATTGGTAATAAGAGGAGCAACTCATATTTAAAGGTTGTGAAATTTCTCCGTCTTTTCAACTTGGGATTCTCAATGGGACTCCATTGATTCTAAAATTTTGAAATTAAATCCTTTGAGGACTTTTAACTAGTGGTCTATCATTGGTCATTTTCAGGTAAAATCCTGAATTTTGATGGTCGTGTCGATTTAATCTCTTGCTTAAGATATTGTGTCAGTTGGGGGACAACAATTATGAACACAATGCATTATTCAGTCTCTATGTTAACAACGCAAAAAGTAGGTTTACAAACTAAGTCGGATATTAAGAATATAAGCCATTTTGCACACATTGGAAGAAATTTGACTGAAGTTTGGCAAACCAGGGTGGATTTGTTTGTTAAGTTGATCATAGTCCCTCTAGAAAGTAGGAACCAAATAAGGGACGCCCAACAACTAATAACAATGCTCAAAAGATAA

Coding sequence (CDS)

ATGCCGAGCAACAACTTCTCGTTTTCGCTTGCCAACCGACAGTGGGATCTTTTAGAAAAGGAAATGCATCATGATTTGTTTCTTTTTGATAAGGAGCTGATGGGATTGGATGAGAATGAAAAAATACTGACAAGAAGTTTACCAAATGTTCACCACGTAATATCTTATATTCGAGGTCCCTTCCTCTTCATATACAACTTCCATCCCACAGATTCTTTCGAAAGATACAGTGTTGGTGTCGAAGAAGCTGGAGAATATCGAATTATATTAAATACTGATGAAATTGAATATGGAGGTCAAGGGAATATAAAGCATGATCAATATCTTCAAAGAACTATAAGCCGAAGCAAAAAGAAACCAGAAACTTCATTTTGTCGTTTAAAAGTTTCTACACAATTTTGCCCATGTTTCTTATTTGGAAATGGGAGTGCTCGTGTTTCTTAG

Protein sequence

MPSNNFSFSLANRQWDLLEKEMHHDLFLFDKELMGLDENEKILTRSLPNVHHVISYIRGPFLFIYNFHPTDSFERYSVGVEEAGEYRIILNTDEIEYGGQGNIKHDQYLQRTISRSKKKPETSFCRLKVSTQFCPCFLFGNGSARVS

Homology

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BLAST of CsGy7G009470 vs. NCBI nr
Match: XP_004139870.1 (PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic [Cucumis sativus])

HSP 1 Score: 234.6 bits (597), Expect = 2.2e-58
Identity = 115/121 (95.04%), Postives = 115/121 (95.04%), Query Frame = 0


Query: 1   MPSNNFSFSLANRQWDLLEKEMHHDLFLFDKELMGLDENEKILTRSLPNVHH------VI 60
           MPSNNFSFSLANRQWDLLEKEMHHDLFLFDKELMGLDENEKILTRSLPNVHH      VI
Sbjct: 757 MPSNNFSFSLANRQWDLLEKEMHHDLFLFDKELMGLDENEKILTRSLPNVHHVNETTKVI 816

Query: 61  SYIRGPFLFIYNFHPTDSFERYSVGVEEAGEYRIILNTDEIEYGGQGNIKHDQYLQRTIS 116
           SYIRGPFLFIYNFHPTDSFERYSVGVEEAGEYRIILNTDEIEYGGQGNIKHDQYLQRTIS
Sbjct: 817 SYIRGPFLFIYNFHPTDSFERYSVGVEEAGEYRIILNTDEIEYGGQGNIKHDQYLQRTIS 876

[Close]

BLAST of CsGy7G009470 vs. NCBI nr
Match: KGN44181.1 (hypothetical protein Csa_7G213190 [Cucumis sativus])

HSP 1 Score: 234.6 bits (597), Expect = 2.2e-58
Identity = 115/121 (95.04%), Postives = 115/121 (95.04%), Query Frame = 0


Query: 1   MPSNNFSFSLANRQWDLLEKEMHHDLFLFDKELMGLDENEKILTRSLPNVHH------VI 60
           MPSNNFSFSLANRQWDLLEKEMHHDLFLFDKELMGLDENEKILTRSLPNVHH      VI
Sbjct: 164 MPSNNFSFSLANRQWDLLEKEMHHDLFLFDKELMGLDENEKILTRSLPNVHHVNETTKVI 223

Query: 61  SYIRGPFLFIYNFHPTDSFERYSVGVEEAGEYRIILNTDEIEYGGQGNIKHDQYLQRTIS 116
           SYIRGPFLFIYNFHPTDSFERYSVGVEEAGEYRIILNTDEIEYGGQGNIKHDQYLQRTIS
Sbjct: 224 SYIRGPFLFIYNFHPTDSFERYSVGVEEAGEYRIILNTDEIEYGGQGNIKHDQYLQRTIS 283

[Close]

BLAST of CsGy7G009470 vs. NCBI nr
Match: XP_008447723.1 (PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X1 [Cucumis melo])

HSP 1 Score: 226.9 bits (577), Expect = 4.6e-56
Identity = 112/121 (92.56%), Postives = 113/121 (93.39%), Query Frame = 0


Query: 1   MPSNNFSFSLANRQWDLLEKEMHHDLFLFDKELMGLDENEKILTRSLPNVHH------VI 60
           M SNNFSFSLANRQWDLLEKEMHH LFLFDKELMGLDENEKILTRSLPNVHH      VI
Sbjct: 763 MLSNNFSFSLANRQWDLLEKEMHHGLFLFDKELMGLDENEKILTRSLPNVHHVNETTKVI 822

Query: 61  SYIRGPFLFIYNFHPTDSFERYSVGVEEAGEYRIILNTDEIEYGGQGNIKHDQYLQRTIS 116
           SYIRGPFLFIYNFHPTDSFERYSVGVEEAGEYRI+LNTDEIEYGGQGNIKHDQYLQRTIS
Sbjct: 823 SYIRGPFLFIYNFHPTDSFERYSVGVEEAGEYRIMLNTDEIEYGGQGNIKHDQYLQRTIS 882

[Close]

BLAST of CsGy7G009470 vs. NCBI nr
Match: XP_008447724.1 (PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X3 [Cucumis melo])

HSP 1 Score: 226.9 bits (577), Expect = 4.6e-56
Identity = 112/121 (92.56%), Postives = 113/121 (93.39%), Query Frame = 0


Query: 1   MPSNNFSFSLANRQWDLLEKEMHHDLFLFDKELMGLDENEKILTRSLPNVHH------VI 60
           M SNNFSFSLANRQWDLLEKEMHH LFLFDKELMGLDENEKILTRSLPNVHH      VI
Sbjct: 729 MLSNNFSFSLANRQWDLLEKEMHHGLFLFDKELMGLDENEKILTRSLPNVHHVNETTKVI 788

Query: 61  SYIRGPFLFIYNFHPTDSFERYSVGVEEAGEYRIILNTDEIEYGGQGNIKHDQYLQRTIS 116
           SYIRGPFLFIYNFHPTDSFERYSVGVEEAGEYRI+LNTDEIEYGGQGNIKHDQYLQRTIS
Sbjct: 789 SYIRGPFLFIYNFHPTDSFERYSVGVEEAGEYRIMLNTDEIEYGGQGNIKHDQYLQRTIS 848

[Close]

BLAST of CsGy7G009470 vs. NCBI nr
Match: XP_016900507.1 (PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X2 [Cucumis melo])

HSP 1 Score: 226.9 bits (577), Expect = 4.6e-56
Identity = 112/121 (92.56%), Postives = 113/121 (93.39%), Query Frame = 0


Query: 1   MPSNNFSFSLANRQWDLLEKEMHHDLFLFDKELMGLDENEKILTRSLPNVHH------VI 60
           M SNNFSFSLANRQWDLLEKEMHH LFLFDKELMGLDENEKILTRSLPNVHH      VI
Sbjct: 763 MLSNNFSFSLANRQWDLLEKEMHHGLFLFDKELMGLDENEKILTRSLPNVHHVNETTKVI 822

Query: 61  SYIRGPFLFIYNFHPTDSFERYSVGVEEAGEYRIILNTDEIEYGGQGNIKHDQYLQRTIS 116
           SYIRGPFLFIYNFHPTDSFERYSVGVEEAGEYRI+LNTDEIEYGGQGNIKHDQYLQRTIS
Sbjct: 823 SYIRGPFLFIYNFHPTDSFERYSVGVEEAGEYRIMLNTDEIEYGGQGNIKHDQYLQRTIS 882

[Close]

BLAST of CsGy7G009470 vs. TAIR10
Match: AT3G20440.2 (Alpha amylase family protein)

HSP 1 Score: 167.9 bits (424), Expect = 4.6e-42
Identity = 78/119 (65.55%), Postives = 99/119 (83.19%), Query Frame = 0


Query: 3   SNNFSFSLANRQWDLLEKEMHHDLFLFDKELMGLDENEKILTRSLPNVHH------VISY 62
           SNNFSFSLANR+WDLLE  +HH LF FDKELM LD+++ IL+R LP++HH      VIS+
Sbjct: 752 SNNFSFSLANRRWDLLESGVHHHLFSFDKELMDLDKSKGILSRGLPSIHHVNDANMVISF 811

Query: 63  IRGPFLFIYNFHPTDSFERYSVGVEEAGEYRIILNTDEIEYGGQGNIKHDQYLQRTISR 116
            RGPFLFI+NFHP++S+E+Y VGVEEAGEY +ILN+DE++YGGQG +  D YLQR+IS+
Sbjct: 812 SRGPFLFIFNFHPSNSYEKYDVGVEEAGEYTMILNSDEVKYGGQGIVTEDHYLQRSISK 870

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BLAST of CsGy7G009470 vs. TAIR10
Match: AT5G03650.1 (starch branching enzyme 2.2)

HSP 1 Score: 63.9 bits (154), Expect = 9.3e-11
Identity = 34/107 (31.78%), Postives = 59/107 (55.14%), Query Frame = 0


Query: 1   MPSNNFSFSLANRQWDLLEKE--MHHDLFLFDKELMGLDENEKILTRS------LPNVHH 60
           +P NNFS+    R++DL + +   +  L  FD+ +  L+EN   +T              
Sbjct: 657 IPGNNFSYDKCRRRFDLGDADYLRYRGLQEFDQAMQHLEENYGFMTSEHQFISRKDEADR 716

Query: 61  VISYIRGPFLFIYNFHPTDSFERYSVGVEEAGEYRIILNTDEIEYGG 100
           VI + RG  +F++NFH T S+  Y +G  + G+Y+I+L++D+  +GG
Sbjct: 717 VIVFERGDLVFVFNFHWTSSYFDYRIGCSKPGKYKIVLDSDDPLFGG 763

[Close]

BLAST of CsGy7G009470 vs. TAIR10
Match: AT2G36390.1 (starch branching enzyme 2.1)

HSP 1 Score: 61.2 bits (147), Expect = 6.0e-10
Identity = 34/104 (32.69%), Postives = 56/104 (53.85%), Query Frame = 0


Query: 4   NNFSFSLANRQWDLLEKE--MHHDLFLFDKELMGLDENEKILTRSLPNV------HHVIS 63
           NN S+    R++DL + E   +H L  FD+ +  L+E    +T     +        VI 
Sbjct: 695 NNGSYDKCRRRFDLGDAEYLRYHGLQEFDRAMQNLEETYGFMTSEHQYISRKDEGDRVIV 754

Query: 64  YIRGPFLFIYNFHPTDSFERYSVGVEEAGEYRIILNTDEIEYGG 100
           + RG  LF++NFH T+S+  Y +G    G+Y+I+L++D   +GG
Sbjct: 755 FERGNLLFVFNFHWTNSYSDYRIGCSVPGKYKIVLDSDNSLFGG 798

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BLAST of CsGy7G009470 vs. Swiss-Prot
Match: sp|D2WL32|GLGB3_ARATH (1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic OS=Arabidopsis thaliana OX=3702 GN=SBE3 PE=1 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 8.2e-41
Identity = 78/119 (65.55%), Postives = 99/119 (83.19%), Query Frame = 0


Query: 3   SNNFSFSLANRQWDLLEKEMHHDLFLFDKELMGLDENEKILTRSLPNVHH------VISY 62
           SNNFSFSLANR+WDLLE  +HH LF FDKELM LD+++ IL+R LP++HH      VIS+
Sbjct: 752 SNNFSFSLANRRWDLLESGVHHHLFSFDKELMDLDKSKGILSRGLPSIHHVNDANMVISF 811

Query: 63  IRGPFLFIYNFHPTDSFERYSVGVEEAGEYRIILNTDEIEYGGQGNIKHDQYLQRTISR 116
            RGPFLFI+NFHP++S+E+Y VGVEEAGEY +ILN+DE++YGGQG +  D YLQR+IS+
Sbjct: 812 SRGPFLFIFNFHPSNSYEKYDVGVEEAGEYTMILNSDEVKYGGQGIVTEDHYLQRSISK 870

[Close]

BLAST of CsGy7G009470 vs. Swiss-Prot
Match: sp|P30924|GLGB_SOLTU (1,4-alpha-glucan-branching enzyme OS=Solanum tuberosum OX=4113 GN=SBE1 PE=2 SV=2)

HSP 1 Score: 80.9 bits (198), Expect = 1.3e-14
Identity = 44/139 (31.65%), Postives = 76/139 (54.68%), Query Frame = 0


Query: 4   NNFSFSLANRQWDLLEKEMHHDLFL--FDKELMGLDE------NEKILTRSLPNVHHVIS 63
           NN+S+    RQW+L + E     F+  FD+ +  LDE      + K +  S+ + + V+ 
Sbjct: 628 NNWSYDKCRRQWNLADSEHLRYKFMNAFDRAMNSLDEKFSFLASGKQIVSSMDDDNKVVV 687

Query: 64  YIRGPFLFIYNFHPTDSFERYSVGVEEAGEYRIILNTDEIEYGGQGNIKHDQYLQRTISR 123
           + RG  +F++NFHP +++E Y VG +  G+YR+ L++D  E+GG G   HD     +   
Sbjct: 688 FERGDLVFVFNFHPKNTYEGYKVGCDLPGKYRVALDSDAWEFGGHGRTGHDVDHFTSPEG 747

Query: 124 SKKKPETSFCRLKVSTQFC 135
               PET+F   ++ ++ C
Sbjct: 748 IPGVPETNFNGRQIPSKCC 766

[Close]

BLAST of CsGy7G009470 vs. Swiss-Prot
Match: sp|Q6CX53|GLGB_KLULA (1,4-alpha-glucan-branching enzyme OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=GLC3 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-13
Identity = 46/113 (40.71%), Postives = 67/113 (59.29%), Query Frame = 0


Query: 3   SNNFSFSLANRQWDLLEKEM--HHDLFLFDKELMGLDENEKILTR-----SLPN-VHHVI 62
           +N  S+  A RQ++L++  +  +  L+ FDK +   ++N K L       SL + V  VI
Sbjct: 568 NNGDSYHYARRQFNLVDDPLLRYQYLYQFDKAMQTTEKNYKWLNTPQAYVSLKHEVDKVI 627

Query: 63  SYIRGPFLFIYNFHPTDSFERYSVGVEEAGEYRIILNTDEIEYGGQGNIKHDQ 108
           ++ R   LFI+NFHPT+SF  Y +GV E G YRI+LN+D+ EYGG   I   Q
Sbjct: 628 AFERNGLLFIFNFHPTESFTDYRIGVNEPGCYRIVLNSDKHEYGGWDRIDESQ 680

[Close]

BLAST of CsGy7G009470 vs. Swiss-Prot
Match: sp|Q757Q6|GLGB_ASHGO (1,4-alpha-glucan-branching enzyme OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=GLC3 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.5e-13
Identity = 44/118 (37.29%), Postives = 69/118 (58.47%), Query Frame = 0


Query: 3   SNNFSFSLANRQWDLLEKEM--HHDLFLFDKELMGLDENEKILT--RSLPNVHH----VI 62
           +N  S+  A RQ++L++  +  +  L+ FDK +   +   K L   ++  ++ H    VI
Sbjct: 558 NNGDSYQYARRQFNLVDDGLLRYKHLYAFDKAMQEAEGKHKWLNTPQAYVSLKHETDKVI 617

Query: 63  SYIRGPFLFIYNFHPTDSFERYSVGVEEAGEYRIILNTDEIEYGGQGNIKHDQYLQRT 113
           S+ R   +FI+NFHPT SF  Y +GV+EAG YRIILN+D  E+GG   I+ +  +  T
Sbjct: 618 SFERNGLVFIFNFHPTQSFTDYRIGVDEAGAYRIILNSDREEFGGHRRIEEENSVFHT 675

[Close]

BLAST of CsGy7G009470 vs. Swiss-Prot
Match: sp|Q6BXN1|GLGB_DEBHA (1,4-alpha-glucan-branching enzyme OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=GLC3 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.9e-13
Identity = 43/109 (39.45%), Postives = 63/109 (57.80%), Query Frame = 0


Query: 4   NNFSFSLANRQWDLLEKEM--HHDLFLFDKELMGLDENEKILTRSLPNV------HHVIS 63
           N  S++ A RQ++L+E ++  +  LF FD  +  LD    IL  S   V        VI 
Sbjct: 558 NGESYAYARRQFNLIEDDLLRYKFLFAFDGAMQHLDTKYGILLSSQAYVSLKNENDKVIV 617

Query: 64  YIRGPFLFIYNFHPTDSFERYSVGVEEAGEYRIILNTDEIEYGGQGNIK 105
           + R   LFI+NFHPT+S+  Y +GVE  G Y+I+LN+D + +GG G I+
Sbjct: 618 FERNGLLFIFNFHPTNSYADYKIGVETPGVYQIVLNSDSLSFGGHGRIE 666

[Close]

BLAST of CsGy7G009470 vs. TrEMBL
Match: tr|A0A0A0K8R4|A0A0A0K8R4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G213190 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 1.5e-58
Identity = 115/121 (95.04%), Postives = 115/121 (95.04%), Query Frame = 0


Query: 1   MPSNNFSFSLANRQWDLLEKEMHHDLFLFDKELMGLDENEKILTRSLPNVHH------VI 60
           MPSNNFSFSLANRQWDLLEKEMHHDLFLFDKELMGLDENEKILTRSLPNVHH      VI
Sbjct: 164 MPSNNFSFSLANRQWDLLEKEMHHDLFLFDKELMGLDENEKILTRSLPNVHHVNETTKVI 223

Query: 61  SYIRGPFLFIYNFHPTDSFERYSVGVEEAGEYRIILNTDEIEYGGQGNIKHDQYLQRTIS 116
           SYIRGPFLFIYNFHPTDSFERYSVGVEEAGEYRIILNTDEIEYGGQGNIKHDQYLQRTIS
Sbjct: 224 SYIRGPFLFIYNFHPTDSFERYSVGVEEAGEYRIILNTDEIEYGGQGNIKHDQYLQRTIS 283

[Close]

BLAST of CsGy7G009470 vs. TrEMBL
Match: tr|A0A1S4DX00|A0A1S4DX00_CUCME (1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490131 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 3.0e-56
Identity = 112/121 (92.56%), Postives = 113/121 (93.39%), Query Frame = 0


Query: 1   MPSNNFSFSLANRQWDLLEKEMHHDLFLFDKELMGLDENEKILTRSLPNVHH------VI 60
           M SNNFSFSLANRQWDLLEKEMHH LFLFDKELMGLDENEKILTRSLPNVHH      VI
Sbjct: 763 MLSNNFSFSLANRQWDLLEKEMHHGLFLFDKELMGLDENEKILTRSLPNVHHVNETTKVI 822

Query: 61  SYIRGPFLFIYNFHPTDSFERYSVGVEEAGEYRIILNTDEIEYGGQGNIKHDQYLQRTIS 116
           SYIRGPFLFIYNFHPTDSFERYSVGVEEAGEYRI+LNTDEIEYGGQGNIKHDQYLQRTIS
Sbjct: 823 SYIRGPFLFIYNFHPTDSFERYSVGVEEAGEYRIMLNTDEIEYGGQGNIKHDQYLQRTIS 882

[Close]

BLAST of CsGy7G009470 vs. TrEMBL
Match: tr|A0A1S3BIZ8|A0A1S3BIZ8_CUCME (1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X3 OS=Cucumis melo OX=3656 GN=LOC103490131 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 3.0e-56
Identity = 112/121 (92.56%), Postives = 113/121 (93.39%), Query Frame = 0


Query: 1   MPSNNFSFSLANRQWDLLEKEMHHDLFLFDKELMGLDENEKILTRSLPNVHH------VI 60
           M SNNFSFSLANRQWDLLEKEMHH LFLFDKELMGLDENEKILTRSLPNVHH      VI
Sbjct: 729 MLSNNFSFSLANRQWDLLEKEMHHGLFLFDKELMGLDENEKILTRSLPNVHHVNETTKVI 788

Query: 61  SYIRGPFLFIYNFHPTDSFERYSVGVEEAGEYRIILNTDEIEYGGQGNIKHDQYLQRTIS 116
           SYIRGPFLFIYNFHPTDSFERYSVGVEEAGEYRI+LNTDEIEYGGQGNIKHDQYLQRTIS
Sbjct: 789 SYIRGPFLFIYNFHPTDSFERYSVGVEEAGEYRIMLNTDEIEYGGQGNIKHDQYLQRTIS 848

[Close]

BLAST of CsGy7G009470 vs. TrEMBL
Match: tr|A0A1S3BIP3|A0A1S3BIP3_CUCME (1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490131 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 3.0e-56
Identity = 112/121 (92.56%), Postives = 113/121 (93.39%), Query Frame = 0


Query: 1   MPSNNFSFSLANRQWDLLEKEMHHDLFLFDKELMGLDENEKILTRSLPNVHH------VI 60
           M SNNFSFSLANRQWDLLEKEMHH LFLFDKELMGLDENEKILTRSLPNVHH      VI
Sbjct: 763 MLSNNFSFSLANRQWDLLEKEMHHGLFLFDKELMGLDENEKILTRSLPNVHHVNETTKVI 822

Query: 61  SYIRGPFLFIYNFHPTDSFERYSVGVEEAGEYRIILNTDEIEYGGQGNIKHDQYLQRTIS 116
           SYIRGPFLFIYNFHPTDSFERYSVGVEEAGEYRI+LNTDEIEYGGQGNIKHDQYLQRTIS
Sbjct: 823 SYIRGPFLFIYNFHPTDSFERYSVGVEEAGEYRIMLNTDEIEYGGQGNIKHDQYLQRTIS 882

[Close]

BLAST of CsGy7G009470 vs. TrEMBL
Match: tr|A0A1J7IES4|A0A1J7IES4_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_19753 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 4.5e-44
Identity = 86/119 (72.27%), Postives = 104/119 (87.39%), Query Frame = 0


Query: 3   SNNFSFSLANRQWDLLEKEMHHDLFLFDKELMGLDENEKILTRSLPNVHH------VISY 62
           SNNFS+SLANRQWDLL KE++HDLF FDK++M LD+ E++L+R  PNVHH      VISY
Sbjct: 595 SNNFSYSLANRQWDLLAKEVNHDLFSFDKDMMKLDKKERVLSRGFPNVHHVNDNSMVISY 654

Query: 63  IRGPFLFIYNFHPTDSFERYSVGVEEAGEYRIILNTDEIEYGGQGNIKHDQYLQRTISR 116
           IRGP LFI+NFHPTDS++ Y++GVEEAGEY+IILNTDEI+YGGQG+IK DQYLQRT+SR
Sbjct: 655 IRGPLLFIFNFHPTDSYDSYAIGVEEAGEYQIILNTDEIKYGGQGSIKEDQYLQRTVSR 713

The following BLAST results are available for this feature:

BLAST of CsGy7G009470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139870.1	2.2e-58	95.04	PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic [Cucu...	[more]
KGN44181.1	2.2e-58	95.04	hypothetical protein Csa_7G213190 [Cucumis sativus]	[more]
XP_008447723.1	4.6e-56	92.56	PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isofo...	[more]
XP_008447724.1	4.6e-56	92.56	PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isofo...	[more]
XP_016900507.1	4.6e-56	92.56	PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isofo...	[more]

BLAST of CsGy7G009470 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G20440.2	4.6e-42	65.55	Alpha amylase family protein	[more]
AT5G03650.1	9.3e-11	31.78	starch branching enzyme 2.2	[more]
AT2G36390.1	6.0e-10	32.69	starch branching enzyme 2.1	[more]

BLAST of CsGy7G009470 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|D2WL32\|GLGB3_ARATH	8.2e-41	65.55	1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic OS=Arabidopsis t...	[more]
sp\|P30924\|GLGB_SOLTU	1.3e-14	31.65	1,4-alpha-glucan-branching enzyme OS=Solanum tuberosum OX=4113 GN=SBE1 PE=2 SV=2	[more]
sp\|Q6CX53\|GLGB_KLULA	1.1e-13	40.71	1,4-alpha-glucan-branching enzyme OS=Kluyveromyces lactis (strain ATCC 8585 / CB...	[more]
sp\|Q757Q6\|GLGB_ASHGO	1.5e-13	37.29	1,4-alpha-glucan-branching enzyme OS=Ashbya gossypii (strain ATCC 10895 / CBS 10...	[more]
sp\|Q6BXN1\|GLGB_DEBHA	1.9e-13	39.45	1,4-alpha-glucan-branching enzyme OS=Debaryomyces hansenii (strain ATCC 36239 / ...	[more]

BLAST of CsGy7G009470 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K8R4\|A0A0A0K8R4_CUCSA	1.5e-58	95.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G213190 PE=4 SV=1	[more]
tr\|A0A1S4DX00\|A0A1S4DX00_CUCME	3.0e-56	92.56	1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X2 OS=Cu...	[more]
tr\|A0A1S3BIZ8\|A0A1S3BIZ8_CUCME	3.0e-56	92.56	1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X3 OS=Cu...	[more]
tr\|A0A1S3BIP3\|A0A1S3BIP3_CUCME	3.0e-56	92.56	1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X1 OS=Cu...	[more]
tr\|A0A1J7IES4\|A0A1J7IES4_LUPAN	4.5e-44	72.27	Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_19753 PE=4 S...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003844	1,4-alpha-glucan branching enzyme activity
GO:0003824	catalytic activity
GO:0043169	cation binding

Vocabulary: **Biological Process**
Term	Definition
GO:0005978	glycogen biosynthetic process
GO:0005975	carbohydrate metabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR037439	Branching_enzy
IPR006048	A-amylase/branching_C
IPR013780	Glyco_hydro_b

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005978	glycogen biosynthetic process
biological_process	GO:0009791	post-embryonic development
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003844	1,4-alpha-glucan branching enzyme activity
molecular_function	GO:0043169	cation binding
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds
molecular_function	GO:0003824	catalytic activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G009470.1	CsGy7G009470.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013780	Glycosyl hydrolase, all-beta	GENE3D	G3DSA:2.60.40.1180		coord: 39..137 e-value: 4.1E-23 score: 83.2
IPR006048	Alpha-amylase/branching enzyme, C-terminal all beta	PFAM	PF02806	Alpha-amylase_C	coord: 51..108 e-value: 4.5E-16 score: 59.0
None	No IPR available	PANTHER	PTHR43651:SF4	1,4-ALPHA-GLUCAN-BRANCHING ENZYME 3, CHLOROPLASTIC/AMYLOPLASTIC	coord: 1..117
None	No IPR available	SUPERFAMILY	SSF51011	Glycosyl hydrolase domain	coord: 51..113
IPR037439	1,4-alpha-glucan-branching enzyme	PANTHER	PTHR43651	FAMILY NOT NAMED	coord: 1..117

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy7G009470	MELO3C013141	Melon (DHL92) v3.5.1	cgybmeB472

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy7G009470	Cucurbita maxima (Rimu)	cgybcmaB882
CsGy7G009470	Cucurbita maxima (Rimu)	cgybcmaB939
CsGy7G009470	Cucurbita moschata (Rifu)	cgybcmoB864
CsGy7G009470	Cucurbita moschata (Rifu)	cgybcmoB922
CsGy7G009470	Cucurbita pepo (Zucchini)	cgybcpeB945
CsGy7G009470	Cucurbita pepo (Zucchini)	cgybcpeB979
CsGy7G009470	Cucumber (Chinese Long) v2	cgybcuB323
CsGy7G009470	Bottle gourd (USVL1VR-Ls)	cgyblsiB478
CsGy7G009470	Melon (DHL92) v3.6.1	cgybmedB469
CsGy7G009470	Watermelon (Charleston Gray)	cgybwcgB477
CsGy7G009470	Watermelon (97103) v1	cgybwmB519
CsGy7G009470	Wild cucumber (PI 183967)	cgybcpiB331
CsGy7G009470	Silver-seed gourd	carcgybB0870
CsGy7G009470	Silver-seed gourd	carcgybB0893
CsGy7G009470	Cucumber (Chinese Long) v3	cgybcucB347
CsGy7G009470	Watermelon (97103) v2	cgybwmbB534
CsGy7G009470	Wax gourd	cgybwgoB661