CsGy7G009050 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy7G009050
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	DNA-directed RNA polymerase subunit
Location	Chr7 : 11319768 .. 11321423 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGAACACATTTCATCATGTTGGGCGTGGTGAGATGAATGTGACCCTTGGAATTCTTCGCCTTCAGGAGATCTTGATGACTGCTTCACAAGATATGAAGACACCCATTATGACATGCCCATTGAAAGAGGGCTACCCAACAAATTTGAGGTTTCATGAAGTACTGTAGAGGTGTTCACCCAAGGATGAAAACGGCACTGAAGTAGAGGAGAAGAAATCGAAGAAGAAGTGAAAAAGTTCACAAAAATTCACATTGCGCAAGGAGAAGACGGATGGTACCGAAGGAGCGACGAACAGCACCGGAGTAGAAGCGAAAAGTTCAAAATATCTTGACGAGGATAACAAGGATTTTTTTTCTCTTTGGGTTTTCTTTTTAAGTTGAGGAGAAAGAAAGGTAAAATTAAAGAAAAGTAATTTAGACAATTCACCCTTCATTTATTCTAAAAAGAGATTATAAAAAAATCTAGAGGGTAAAATTAAACATTTAAAATTATGAAATCAAATCTAGAGGGTAAAGATGAAAATAGCAATTCAACAAGGGCTGTAATATGGCTTTGGTGAGAAAACAAGAGAATTTGAATGCTTTTAATTGGGAGGACACATGTAAACAAATCTCTGGATTCATTGTTTTATACAAAAACTTTTTCGAGCTGACAATGGCAATAACTTCAATGATGGGAATGGCTTGCACTCACTGCAATAAATTTTTAGAATGGTTTGTTTTGCCACCTTATGTGGAAATGTTAGGTAACAAAGGACATTTGGCCTCAATTTTTATTTATTAATGTGGATTCTCTATGTCATGACAGAACAAGGTGGAAATCAAGACCATTGGGCTTGATCGTCGACCATGTATCCCTTTTGACATGAACACTATTTGTGTGTCCATTGAACATAGTATTCATCATAATCATTCCTCTAGTGTGGTGTATGTTGATTAAGTTGTGATGGGTTTCTATTTATCTCATACACATCCTCACCGTGTTGTTTGTTATCCTCCGTTGGAAAACTATTGGAAGTTGTACACTGATGTGGCTTCAAATTTTGCCCGTTGTTCAGGTGGTCTTGGGTGGGTGCTCCTGAACAATTTGGATCGGCTTCATCTTGTTGGCTTCAAGTTTATTAAAAGATATAGCAAAGTTAAGGCTCTTGAAGCCAAGGCTATTTGTGAAGGCCTCTCTTGCTTGATCTTTTTTAATCTTTGGGTCATTTATTGTAGAGTATGTACAACTTCTTTACCGACAATTCTGAAGACCTGACTAAGTACTCATTTTTTATCCCATGAGGTTGAAACTATGTGCAAGAAGCTGATGTTTCTTTCATCCATGTTCGTCGTTGGAATAATGTTTTGGCTCACTCATTGGCGTCCAAGGCGTTGAAAGAGAAGAGAGGGAACCTACTTTGAGGAATAAGACTCAAGAGGAAGGGAAAAGGTAATGAATTAATGAGCAGACTCATTCAACAGCTCGATCTTTATTTGATTGTACCCTGAGAACCCATCTCAAAATTCCCGCTTTATTGTCAACCAAGATCTCAATGTGTGGCAAAGGGAAATCATCCATCCTTGGGACCGGCTTTGTTGAGGTCACGAAAGTCAACGCACATGCGGACTCTGCCCTCCTTTTTCGGGAAAGAGAGATAGGAAAGAGAAACTTC

mRNA sequence

GTTGAACACATTTCATCATGTTGGGCGTGGTGAGATGAATGTGACCCTTGGAATTCTTCGCCTTCAGGAGATCTTGATGACTGCTTCACAAGATATGAAGACACCCATTATGACATGCCCATTGAAAGAGGGCTACCCAACAAATTTGAGGTGGTCTTGGGTGGGTGCTCCTGAACAATTTGGATCGGCTTCATCTTGTTGGCTTCAAACTCATTCAACAGCTCGATCTTTATTTGATTGTACCCTGAGAACCCATCTCAAAATTCCCGCTTTATTGTCAACCAAGATCTCAATGTGTGGCAAAGGGAAATCATCCATCCTTGGGACCGGCTTTGTTGAGGTCACGAAAGTCAACGCACATGCGGACTCTGCCCTCCTTTTTCGGGAAAGAGAGATAGGAAAGAGAAACTTC

Coding sequence (CDS)

ATGAATGTGACCCTTGGAATTCTTCGCCTTCAGGAGATCTTGATGACTGCTTCACAAGATATGAAGACACCCATTATGACATGCCCATTGAAAGAGGGCTACCCAACAAATTTGAGGTGGTCTTGGGTGGGTGCTCCTGAACAATTTGGATCGGCTTCATCTTGTTGGCTTCAAACTCATTCAACAGCTCGATCTTTATTTGATTGTACCCTGAGAACCCATCTCAAAATTCCCGCTTTATTGTCAACCAAGATCTCAATGTGTGGCAAAGGGAAATCATCCATCCTTGGGACCGGCTTTGTTGAGGTCACGAAAGTCAACGCACATGCGGACTCTGCCCTCCTTTTTCGGGAAAGAGAGATAGGAAAGAGAAACTTC

Protein sequence

MNVTLGILRLQEILMTASQDMKTPIMTCPLKEGYPTNLRWSWVGAPEQFGSASSCWLQTHSTARSLFDCTLRTHLKIPALLSTKISMCGKGKSSILGTGFVEVTKVNAHADSALLFREREIGKRNF

Homology

[Close]

BLAST of CsGy7G009050 vs. NCBI nr
Match: XP_011652120.1 (PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Cucumis sativus] >XP_011652121.1 PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Cucumis sativus] >KGN59337.1 hypothetical protein Csa_3G811600 [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 8.9e-08
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 1    MNVTLGILRLQEILMTASQDMKTPIMTCPLKEGY 35
            MNVTLGI RLQEILMTASQD+KTPIMTCPLKEGY
Sbjct: 1188 MNVTLGIPRLQEILMTASQDIKTPIMTCPLKEGY 1221

[Close]

BLAST of CsGy7G009050 vs. NCBI nr
Match: XP_008443105.2 (PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit 1 [Cucumis melo])

HSP 1 Score: 66.2 bits (160), Expect = 8.9e-08
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 1    MNVTLGILRLQEILMTASQDMKTPIMTCPLKEGY 35
            MNVTLGI RLQEILMTASQD+KTPIMTCPLKEGY
Sbjct: 1188 MNVTLGIPRLQEILMTASQDIKTPIMTCPLKEGY 1221

[Close]

BLAST of CsGy7G009050 vs. NCBI nr
Match: XP_022938891.1 (DNA-directed RNA polymerase I subunit 1 [Cucurbita moschata])

HSP 1 Score: 65.1 bits (157), Expect = 2.0e-07
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 1    MNVTLGILRLQEILMTASQDMKTPIMTCPLKEGY 35
            MNVTLGI RLQEILMTASQD+KTPIMTCPL+EGY
Sbjct: 1202 MNVTLGIPRLQEILMTASQDIKTPIMTCPLREGY 1235

[Close]

BLAST of CsGy7G009050 vs. NCBI nr
Match: XP_022971295.1 (DNA-directed RNA polymerase I subunit 1 [Cucurbita maxima])

HSP 1 Score: 65.1 bits (157), Expect = 2.0e-07
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 1    MNVTLGILRLQEILMTASQDMKTPIMTCPLKEGY 35
            MNVTLGI RLQEILMTASQD+KTPIMTCPL+EGY
Sbjct: 1202 MNVTLGIPRLQEILMTASQDIKTPIMTCPLREGY 1235

[Close]

BLAST of CsGy7G009050 vs. NCBI nr
Match: XP_023538901.1 (DNA-directed RNA polymerase I subunit 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 65.1 bits (157), Expect = 2.0e-07
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 1    MNVTLGILRLQEILMTASQDMKTPIMTCPLKEGY 35
            MNVTLGI RLQEILMTASQD+KTPIMTCPL+EGY
Sbjct: 1202 MNVTLGIPRLQEILMTASQDIKTPIMTCPLREGY 1235

[Close]

BLAST of CsGy7G009050 vs. TAIR10
Match: AT3G57660.1 (nuclear RNA polymerase A1)

HSP 1 Score: 53.9 bits (128), Expect = 8.2e-08
Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 1    MNVTLGILRLQEILMTASQDMKTPIMTCPLKEG 34
            MNVTLGI RLQEILMTA+ ++KTPIMTCPL +G
Sbjct: 1186 MNVTLGIPRLQEILMTAAANIKTPIMTCPLLKG 1218

[Close]

BLAST of CsGy7G009050 vs. Swiss-Prot
Match: sp|Q9SVY0|NRPA1_ARATH (DNA-directed RNA polymerase I subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPA1 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.5e-06
Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 1    MNVTLGILRLQEILMTASQDMKTPIMTCPLKEG 34
            MNVTLGI RLQEILMTA+ ++KTPIMTCPL +G
Sbjct: 1186 MNVTLGIPRLQEILMTAAANIKTPIMTCPLLKG 1218

[Close]

BLAST of CsGy7G009050 vs. TrEMBL
Match: tr|A0A1S3B6U1|A0A1S3B6U1_CUCME (DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103486799 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.9e-08
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 1    MNVTLGILRLQEILMTASQDMKTPIMTCPLKEGY 35
            MNVTLGI RLQEILMTASQD+KTPIMTCPLKEGY
Sbjct: 1188 MNVTLGIPRLQEILMTASQDIKTPIMTCPLKEGY 1221

[Close]

BLAST of CsGy7G009050 vs. TrEMBL
Match: tr|A0A0A0LF53|A0A0A0LF53_CUCSA (DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G811600 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.9e-08
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 1    MNVTLGILRLQEILMTASQDMKTPIMTCPLKEGY 35
            MNVTLGI RLQEILMTASQD+KTPIMTCPLKEGY
Sbjct: 1188 MNVTLGIPRLQEILMTASQDIKTPIMTCPLKEGY 1221

[Close]

BLAST of CsGy7G009050 vs. TrEMBL
Match: tr|A0A2K1ZXB6|A0A2K1ZXB6_POPTR (DNA-directed RNA polymerase subunit (Fragment) OS=Populus trichocarpa OX=3694 GN=POPTR_006G055300v3 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.5e-06
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 1    MNVTLGILRLQEILMTASQDMKTPIMTCPLKEG 34
            MNVTLGI RLQEILMTAS D+KTPIMTCPL+EG
Sbjct: 1175 MNVTLGIPRLQEILMTASADIKTPIMTCPLQEG 1207

[Close]

BLAST of CsGy7G009050 vs. TrEMBL
Match: tr|A0A1Q3BWT2|A0A1Q3BWT2_CEPFO (DNA-directed RNA polymerase subunit OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_15741 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.2e-06
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 1    MNVTLGILRLQEILMTASQDMKTPIMTCPLKEG 34
            MNVTLGI RLQEILMTASQD+KTP+MTCPL +G
Sbjct: 1228 MNVTLGIPRLQEILMTASQDIKTPVMTCPLHKG 1260

[Close]

BLAST of CsGy7G009050 vs. TrEMBL
Match: tr|A0A2P5F1L9|A0A2P5F1L9_9ROSA (DNA-directed RNA polymerase subunit OS=Trema orientalis OX=63057 GN=TorRG33x02_125130 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 9.3e-06
Identity = 27/33 (81.82%), Postives = 32/33 (96.97%), Query Frame = 0


Query: 1    MNVTLGILRLQEILMTASQDMKTPIMTCPLKEG 34
            MNVTLGI RLQEILMTAS+D+KTP+MTCPL++G
Sbjct: 1229 MNVTLGIPRLQEILMTASKDIKTPVMTCPLQDG 1261

The following BLAST results are available for this feature:

BLAST of CsGy7G009050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652120.1	8.9e-08	94.12	PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Cucumis sativus] >XP_0116...	[more]
XP_008443105.2	8.9e-08	94.12	PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit 1 [Cucumis...	[more]
XP_022938891.1	2.0e-07	91.18	DNA-directed RNA polymerase I subunit 1 [Cucurbita moschata]	[more]
XP_022971295.1	2.0e-07	91.18	DNA-directed RNA polymerase I subunit 1 [Cucurbita maxima]	[more]
XP_023538901.1	2.0e-07	91.18	DNA-directed RNA polymerase I subunit 1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy7G009050 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G57660.1	8.2e-08	78.79	nuclear RNA polymerase A1	[more]

BLAST of CsGy7G009050 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SVY0\|NRPA1_ARATH	1.5e-06	78.79	DNA-directed RNA polymerase I subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPA1...	[more]

BLAST of CsGy7G009050 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B6U1\|A0A1S3B6U1_CUCME	5.9e-08	94.12	DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103486799 PE=3...	[more]
tr\|A0A0A0LF53\|A0A0A0LF53_CUCSA	5.9e-08	94.12	DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G811600 P...	[more]
tr\|A0A2K1ZXB6\|A0A2K1ZXB6_POPTR	5.5e-06	87.88	DNA-directed RNA polymerase subunit (Fragment) OS=Populus trichocarpa OX=3694 GN...	[more]
tr\|A0A1Q3BWT2\|A0A1Q3BWT2_CEPFO	7.2e-06	84.85	DNA-directed RNA polymerase subunit OS=Cephalotus follicularis OX=3775 GN=CFOL_v...	[more]
tr\|A0A2P5F1L9\|A0A2P5F1L9_9ROSA	9.3e-06	81.82	DNA-directed RNA polymerase subunit OS=Trema orientalis OX=63057 GN=TorRG33x02_1...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G009050.1	CsGy7G009050.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy7G009050	Cucumber (Chinese Long) v3	cgybcucB347
CsGy7G009050	Watermelon (97103) v2	cgybwmbB545
CsGy7G009050	Wax gourd	cgybwgoB679
CsGy7G009050	Cucurbita maxima (Rimu)	cgybcmaB888
CsGy7G009050	Cucurbita maxima (Rimu)	cgybcmaB931
CsGy7G009050	Cucurbita moschata (Rifu)	cgybcmoB870
CsGy7G009050	Cucurbita moschata (Rifu)	cgybcmoB915
CsGy7G009050	Cucurbita pepo (Zucchini)	cgybcpeB954
CsGy7G009050	Cucurbita pepo (Zucchini)	cgybcpeB984
CsGy7G009050	Cucumber (Chinese Long) v2	cgybcuB323
CsGy7G009050	Bottle gourd (USVL1VR-Ls)	cgyblsiB474
CsGy7G009050	Melon (DHL92) v3.5.1	cgybmeB472
CsGy7G009050	Melon (DHL92) v3.6.1	cgybmedB469
CsGy7G009050	Watermelon (Charleston Gray)	cgybwcgB488
CsGy7G009050	Watermelon (97103) v1	cgybwmB532
CsGy7G009050	Wild cucumber (PI 183967)	cgybcpiB331
CsGy7G009050	Silver-seed gourd	carcgybB0084
CsGy7G009050	Silver-seed gourd	carcgybB0440