CsGy7G005670 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy7G005670
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	hydroxyproline-rich glycoprotein family protein
Location	Chr7 : 4188858 .. 4189406 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTACTCATCGCTACTCAACGGTCTTTGCATTGCACCTCATATTTGGTGTTCTTACGATGATGAGCTTTGATTTCTTCATGACAGCAAGTGCAAGGCATCTTTTGGAGACACCATTACCTAAGGTACCCGAAGAGCTTCCAAAGCCTGAAATGCCTACTTTGCCAAAGCCTCAGCTTCCTCCACTACCAAAGTTTGAGTTACCTCCATTGCCTCACCTTCCACCTTTGGAAAAGCCTAAACTTCCTGAATTGCCAAAGTATGAACTTCCAAAGTTTCCTGAATTACCAAAAGTACCTAGTTTTGATCTCTCCAAAATCCCTGAAGTTCCAAGTTTGCCTAAGTTTGATATTTCGAAGTTGCCCGAAGTTTCAAATCCACCAAAATCTGAACTTCCAAAATTACCTGAATTGCCAAATGTGCCTAAACCAGAACTTCCTAAATTACCTGAATTACCACTTCTCCCAAAACCAGTTCTTCCTACTCTTCCAAAAGACATGTCTTTCCCTTCATTTAGCCCACCCCACGTGACCACATCAAACCCTTGA

mRNA sequence

ATGTCTACTCATCGCTACTCAACGGTCTTTGCATTGCACCTCATATTTGGTGTTCTTACGATGATGAGCTTTGATTTCTTCATGACAGCAAGTGCAAGGCATCTTTTGGAGACACCATTACCTAAGGTACCCGAAGAGCTTCCAAAGCCTGAAATGCCTACTTTGCCAAAGCCTCAGCTTCCTCCACTACCAAAGTTTGAGTTACCTCCATTGCCTCACCTTCCACCTTTGGAAAAGCCTAAACTTCCTGAATTGCCAAAGTATGAACTTCCAAAGTTTCCTGAATTACCAAAAGTACCTAGTTTTGATCTCTCCAAAATCCCTGAAGTTCCAAGTTTGCCTAAGTTTGATATTTCGAAGTTGCCCGAAGTTTCAAATCCACCAAAATCTGAACTTCCAAAATTACCTGAATTGCCAAATGTGCCTAAACCAGAACTTCCTAAATTACCTGAATTACCACTTCTCCCAAAACCAGTTCTTCCTACTCTTCCAAAAGACATGTCTTTCCCTTCATTTAGCCCACCCCACGTGACCACATCAAACCCTTGA

Coding sequence (CDS)

ATGTCTACTCATCGCTACTCAACGGTCTTTGCATTGCACCTCATATTTGGTGTTCTTACGATGATGAGCTTTGATTTCTTCATGACAGCAAGTGCAAGGCATCTTTTGGAGACACCATTACCTAAGGTACCCGAAGAGCTTCCAAAGCCTGAAATGCCTACTTTGCCAAAGCCTCAGCTTCCTCCACTACCAAAGTTTGAGTTACCTCCATTGCCTCACCTTCCACCTTTGGAAAAGCCTAAACTTCCTGAATTGCCAAAGTATGAACTTCCAAAGTTTCCTGAATTACCAAAAGTACCTAGTTTTGATCTCTCCAAAATCCCTGAAGTTCCAAGTTTGCCTAAGTTTGATATTTCGAAGTTGCCCGAAGTTTCAAATCCACCAAAATCTGAACTTCCAAAATTACCTGAATTGCCAAATGTGCCTAAACCAGAACTTCCTAAATTACCTGAATTACCACTTCTCCCAAAACCAGTTCTTCCTACTCTTCCAAAAGACATGTCTTTCCCTTCATTTAGCCCACCCCACGTGACCACATCAAACCCTTGA

Protein sequence

MSTHRYSTVFALHLIFGVLTMMSFDFFMTASARHLLETPLPKVPEELPKPEMPTLPKPQLPPLPKFELPPLPHLPPLEKPKLPELPKYELPKFPELPKVPSFDLSKIPEVPSLPKFDISKLPEVSNPPKSELPKLPELPNVPKPELPKLPELPLLPKPVLPTLPKDMSFPSFSPPHVTTSNP

Homology

[Close]

BLAST of CsGy7G005670 vs. NCBI nr
Match: XP_011658824.1 (PREDICTED: periaxin-like [Cucumis sativus])

HSP 1 Score: 107.5 bits (267), Expect = 5.0e-20
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MSTHRYSTVFALHLIFGVLTMMSFDFFMTASARHLLETPLPKVPEELPKPEMP 54
          MSTHRYSTVFALHLIFGVLTMMSFDFFMTASARHLLETPLPKVPEELPKPEMP
Sbjct: 1  MSTHRYSTVFALHLIFGVLTMMSFDFFMTASARHLLETPLPKVPEELPKPEMP 53

[Close]

BLAST of CsGy7G005670 vs. NCBI nr
Match: XP_008455138.1 (PREDICTED: periaxin-like [Cucumis melo])

HSP 1 Score: 82.0 bits (201), Expect = 2.3e-12
Identity = 48/55 (87.27%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 1  MSTHRYSTVFALHLIFGVL-TMMSFDFF-MTASARHLLETPLPKVPEELPKPEMP 54
          MSTHRYST FA HLIFGVL  MMSFDFF MTASARHLLETPLPKVPEELPK E+P
Sbjct: 1  MSTHRYST-FASHLIFGVLMIMMSFDFFIMTASARHLLETPLPKVPEELPKLEIP 54

[Close]

BLAST of CsGy7G005670 vs. NCBI nr
Match: XP_008455139.1 (PREDICTED: periaxin-like [Cucumis melo])

HSP 1 Score: 69.7 bits (169), Expect = 1.2e-08
Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 1  MSTHRYSTVFALHLIFGVLTMMSFDF-FMTASARHLLETPLPKVPEELPKPEMP 54
          M+THR ST+ A  LI G+L MMSFDF  M+ SARHLLETPLP VPEELPKPE+P
Sbjct: 1  MATHRLSTLKA-PLILGILMMMSFDFLIMSVSARHLLETPLPHVPEELPKPEIP 53

[Close]

BLAST of CsGy7G005670 vs. NCBI nr
Match: XP_022927800.1 (protein PELPK1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 62.8 bits (151), Expect = 1.4e-06
Identity = 35/50 (70.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 5  RYSTVFALHLIFGVLTMMSFD-FFMTASARHLLETPLPKVPEELPKPEMP 54
          R+ST F   LI  V  +MSFD F MT SARHLLETP+PKVPEELPKPE+P
Sbjct: 4  RFST-FVFSLILSVSMLMSFDCFVMTVSARHLLETPVPKVPEELPKPEVP 52

[Close]

BLAST of CsGy7G005670 vs. NCBI nr
Match: XP_022927801.1 (protein PELPK1-like isoform X2 [Cucurbita moschata] >XP_022927802.1 protein PELPK1-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 62.8 bits (151), Expect = 1.4e-06
Identity = 35/50 (70.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 5  RYSTVFALHLIFGVLTMMSFD-FFMTASARHLLETPLPKVPEELPKPEMP 54
          R+ST F   LI  V  +MSFD F MT SARHLLETP+PKVPEELPKPE+P
Sbjct: 4  RFST-FVFSLILSVSMLMSFDCFVMTVSARHLLETPVPKVPEELPKPEVP 52

[Close]

BLAST of CsGy7G005670 vs. TrEMBL
Match: tr|A0A1S3C077|A0A1S3C077_CUCME (periaxin-like OS=Cucumis melo OX=3656 GN=LOC103495381 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.5e-12
Identity = 48/55 (87.27%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 1  MSTHRYSTVFALHLIFGVL-TMMSFDFF-MTASARHLLETPLPKVPEELPKPEMP 54
          MSTHRYST FA HLIFGVL  MMSFDFF MTASARHLLETPLPKVPEELPK E+P
Sbjct: 1  MSTHRYST-FASHLIFGVLMIMMSFDFFIMTASARHLLETPLPKVPEELPKLEIP 54

[Close]

BLAST of CsGy7G005670 vs. TrEMBL
Match: tr|A0A1S3C0Y7|A0A1S3C0Y7_CUCME (periaxin-like OS=Cucumis melo OX=3656 GN=LOC103495382 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 7.7e-09
Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 1  MSTHRYSTVFALHLIFGVLTMMSFDF-FMTASARHLLETPLPKVPEELPKPEMP 54
          M+THR ST+ A  LI G+L MMSFDF  M+ SARHLLETPLP VPEELPKPE+P
Sbjct: 1  MATHRLSTLKA-PLILGILMMMSFDFLIMSVSARHLLETPLPHVPEELPKPEIP 53

The following BLAST results are available for this feature:

BLAST of CsGy7G005670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011658824.1	5.0e-20	100.00	PREDICTED: periaxin-like [Cucumis sativus]	[more]
XP_008455138.1	2.3e-12	87.27	PREDICTED: periaxin-like [Cucumis melo]	[more]
XP_008455139.1	1.2e-08	72.22	PREDICTED: periaxin-like [Cucumis melo]	[more]
XP_022927800.1	1.4e-06	70.00	protein PELPK1-like isoform X1 [Cucurbita moschata]	[more]
XP_022927801.1	1.4e-06	70.00	protein PELPK1-like isoform X2 [Cucurbita moschata] >XP_022927802.1 protein PELP...	[more]

BLAST of CsGy7G005670 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy7G005670 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy7G005670 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C077\|A0A1S3C077_CUCME	1.5e-12	87.27	periaxin-like OS=Cucumis melo OX=3656 GN=LOC103495381 PE=4 SV=1	[more]
tr\|A0A1S3C0Y7\|A0A1S3C0Y7_CUCME	7.7e-09	72.22	periaxin-like OS=Cucumis melo OX=3656 GN=LOC103495382 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G005670.1	CsGy7G005670.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..160
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..160
None	No IPR available	PANTHER	PTHR33088	FAMILY NOT NAMED	coord: 16..170
None	No IPR available	PANTHER	PTHR33088:SF9	SUBFAMILY NOT NAMED	coord: 16..170

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy7G005670	MELO3C018598	Melon (DHL92) v3.5.1	cgybmeB468
CsGy7G005670	CSPI07G05980	Wild cucumber (PI 183967)	cgybcpiB332
CsGy7G005670	Lsi03G007170	Bottle gourd (USVL1VR-Ls)	cgyblsiB484

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy7G005670	Watermelon (97103) v2	cgybwmbB530
CsGy7G005670	Wax gourd	cgybwgoB632
CsGy7G005670	Wax gourd	cgybwgoB646
CsGy7G005670	Cucurbita maxima (Rimu)	cgybcmaB895
CsGy7G005670	Cucurbita maxima (Rimu)	cgybcmaB902
CsGy7G005670	Cucurbita maxima (Rimu)	cgybcmaB945
CsGy7G005670	Cucurbita maxima (Rimu)	cgybcmaB951
CsGy7G005670	Cucurbita moschata (Rifu)	cgybcmoB881
CsGy7G005670	Cucurbita moschata (Rifu)	cgybcmoB879
CsGy7G005670	Cucurbita moschata (Rifu)	cgybcmoB928
CsGy7G005670	Cucurbita moschata (Rifu)	cgybcmoB933
CsGy7G005670	Cucurbita pepo (Zucchini)	cgybcpeB911
CsGy7G005670	Cucurbita pepo (Zucchini)	cgybcpeB916
CsGy7G005670	Cucurbita pepo (Zucchini)	cgybcpeB966
CsGy7G005670	Cucurbita pepo (Zucchini)	cgybcpeB969
CsGy7G005670	Cucumber (Chinese Long) v2	cgybcuB324
CsGy7G005670	Bottle gourd (USVL1VR-Ls)	cgyblsiB490
CsGy7G005670	Melon (DHL92) v3.5.1	cgybmeB502
CsGy7G005670	Melon (DHL92) v3.6.1	cgybmedB465
CsGy7G005670	Melon (DHL92) v3.6.1	cgybmedB498
CsGy7G005670	Watermelon (Charleston Gray)	cgybwcgB473
CsGy7G005670	Watermelon (97103) v1	cgybwmB518
CsGy7G005670	Watermelon (97103) v1	cgybwmB533
CsGy7G005670	Silver-seed gourd	carcgybB0303
CsGy7G005670	Silver-seed gourd	carcgybB0379
CsGy7G005670	Silver-seed gourd	carcgybB0729
CsGy7G005670	Cucumber (Chinese Long) v3	cgybcucB348