CsGy7G005030 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy7G005030
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr7 : 3776663 .. 3776938 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGTTAAAAGAGAAGTGAAATCGTATTCGTCATTCGAGAGCACTGAATTACGTGTTGAAAGGATCGGGAGCAATCGCCGTCGCGTTGGAGCAGAAGATGGAGGAAGAGGGAAATTGGGAGGAGAAGCCGCGTGGGGACCCGTTCGTGCCAGAGCTCGCCATCAGTCGTCGTGGGTCACCATTGTGAGGTGTGGTGTTCAACTTCAGAGCGGTTCGTCTCGTGGCGTTCGTGGAGGGAGAGATGGAGAGATGGAGAGAGAAAAAGGAAAGTAA

mRNA sequence

ATGAAAGTTAAAAGAGAAGTGAAATCGTATTCGTCATTCGAGAGCACTGAATTACGTGTTGAAAGGATCGGGAGCAATCGCCGTCGCGTTGGAGCAGAAGATGGAGGAAGAGGGAAATTGGGAGGAGAAGCCGCGTGGGGACCCGTTCGTGCCAGAGCTCGCCATCAGTCGTCGTGGGTCACCATTGTGAGGTGTGGTGTTCAACTTCAGAGCGGTTCGTCTCGTGGCGTTCGTGGAGGGAGAGATGGAGAGATGGAGAGAGAAAAAGGAAAGTAA

Coding sequence (CDS)

ATGAAAGTTAAAAGAGAAGTGAAATCGTATTCGTCATTCGAGAGCACTGAATTACGTGTTGAAAGGATCGGGAGCAATCGCCGTCGCGTTGGAGCAGAAGATGGAGGAAGAGGGAAATTGGGAGGAGAAGCCGCGTGGGGACCCGTTCGTGCCAGAGCTCGCCATCAGTCGTCGTGGGTCACCATTGTGAGGTGTGGTGTTCAACTTCAGAGCGGTTCGTCTCGTGGCGTTCGTGGAGGGAGAGATGGAGAGATGGAGAGAGAAAAAGGAAAGTAA

Protein sequence

MKVKREVKSYSSFESTELRVERIGSNRRRVGAEDGGRGKLGGEAAWGPVRARARHQSSWVTIVRCGVQLQSGSSRGVRGGRDGEMEREKGK

Homology

[Close]

BLAST of CsGy7G005030 vs. NCBI nr
Match: KGN43703.1 (hypothetical protein Csa_7G061700 [Cucumis sativus])

HSP 1 Score: 176.8 bits (447), Expect = 3.4e-41
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MKVKREVKSYSSFESTELRVERIGSNRRRVGAEDGGRGKLGGEAAWGPVRARARHQSSWV 60
          MKVKREVKSYSSFESTELRVERIGSNRRRVGAEDGGRGKLGGEAAWGPVRARARHQSSWV
Sbjct: 1  MKVKREVKSYSSFESTELRVERIGSNRRRVGAEDGGRGKLGGEAAWGPVRARARHQSSWV 60

Query: 61 TIVRCGVQLQSGSSRGVRGGRDGEMEREKGK 92
          TIVRCGVQLQSGSSRGVRGGRDGEMEREKGK
Sbjct: 61 TIVRCGVQLQSGSSRGVRGGRDGEMEREKGK 91

[Close]

BLAST of CsGy7G005030 vs. TrEMBL
Match: tr|A0A0A0K2I6|A0A0A0K2I6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G061700 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.2e-41
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MKVKREVKSYSSFESTELRVERIGSNRRRVGAEDGGRGKLGGEAAWGPVRARARHQSSWV 60
          MKVKREVKSYSSFESTELRVERIGSNRRRVGAEDGGRGKLGGEAAWGPVRARARHQSSWV
Sbjct: 1  MKVKREVKSYSSFESTELRVERIGSNRRRVGAEDGGRGKLGGEAAWGPVRARARHQSSWV 60

Query: 61 TIVRCGVQLQSGSSRGVRGGRDGEMEREKGK 92
          TIVRCGVQLQSGSSRGVRGGRDGEMEREKGK
Sbjct: 61 TIVRCGVQLQSGSSRGVRGGRDGEMEREKGK 91

The following BLAST results are available for this feature:

BLAST of CsGy7G005030 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43703.1	3.4e-41	100.00	hypothetical protein Csa_7G061700 [Cucumis sativus]	[more]

BLAST of CsGy7G005030 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy7G005030 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy7G005030 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K2I6\|A0A0A0K2I6_CUCSA	2.2e-41	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G061700 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G005030.1	CsGy7G005030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..91

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy7G005030	Csa7G061700	Cucumber (Chinese Long) v2	cgybcuB324
CsGy7G005030	CsaV3_7G006360	Cucumber (Chinese Long) v3	cgybcucB348

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy7G005030	Cucurbita maxima (Rimu)	cgybcmaB895
CsGy7G005030	Cucurbita maxima (Rimu)	cgybcmaB949
CsGy7G005030	Cucurbita moschata (Rifu)	cgybcmoB881
CsGy7G005030	Cucurbita moschata (Rifu)	cgybcmoB931
CsGy7G005030	Cucurbita pepo (Zucchini)	cgybcpeB914
CsGy7G005030	Cucurbita pepo (Zucchini)	cgybcpeB969
CsGy7G005030	Bottle gourd (USVL1VR-Ls)	cgyblsiB489
CsGy7G005030	Melon (DHL92) v3.5.1	cgybmeB468
CsGy7G005030	Melon (DHL92) v3.6.1	cgybmedB465
CsGy7G005030	Watermelon (Charleston Gray)	cgybwcgB473
CsGy7G005030	Wild cucumber (PI 183967)	cgybcpiB332
CsGy7G005030	Watermelon (97103) v2	cgybwmbB530
CsGy7G005030	Wax gourd	cgybwgoB632