CsGy7G004730 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy7G004730
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	protein PHLOEM PROTEIN 2-LIKE A1-like
Location	Chr7 : 3528992 .. 3529291 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCGAAAAGGAGTCGGAAGCAAAAAAAAAATTACAAGCAGTAGCCAAGTATGGTCATTGCTTACAAGTTTTATGTAAAGATTCAGACGTGCAACTCCTTTGGCCTTCCTACGATGAACTTTATGCTCAAGTCTCTAGTGGAATCATATTCAACAATAAGGCAAGTGAATATATATATCCACATACATGTATACATTTTATTGTTTATGTCTGTAAACTAATATATATATATATATACTTTTAAGTAGTACACAATTTTAATTATATTACATCAAAGTTGATCGTTATGAATGATTAA

mRNA sequence

ATGTGCGAAAAGGAGTCGGAAGCAAAAAAAAAATTACAAGCAGTAGCCAAGTATGGTCATTGCTTACAAGTTTTATGTAAAGATTCAGACGTGCAACTCCTTTGGCCTTCCTACGATGAACTTTATGCTCAAGTCTCTAGTGGAATCATATTCAACAATAAGGCAATACACAATTTTAATTATATTACATCAAAGTTGATCGTTATGAATGATTAA

Coding sequence (CDS)

ATGTGCGAAAAGGAGTCGGAAGCAAAAAAAAAATTACAAGCAGTAGCCAAGTATGGTCATTGCTTACAAGTTTTATGTAAAGATTCAGACGTGCAACTCCTTTGGCCTTCCTACGATGAACTTTATGCTCAAGTCTCTAGTGGAATCATATTCAACAATAAGGCAATACACAATTTTAATTATATTACATCAAAGTTGATCGTTATGAATGATTAA

Protein sequence

MCEKESEAKKKLQAVAKYGHCLQVLCKDSDVQLLWPSYDELYAQVSSGIIFNNKAIHNFNYITSKLIVMND

Homology

[Close]

BLAST of CsGy7G004730 vs. NCBI nr
Match: XP_004136858.1 (PREDICTED: uncharacterized protein PHLOEM PROTEIN 2-LIKE A4 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 1.6e-22
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MCEKESEAKKKLQAVAKYGHCLQVLCKDSDVQLLWPSYDELYAQVSSGIIFNNK 55
          MCEKESEAKKKLQAVAKYGHCLQVLCKDSDVQLLWPSYDELYAQVSSGIIFNNK
Sbjct: 1  MCEKESEAKKKLQAVAKYGHCLQVLCKDSDVQLLWPSYDELYAQVSSGIIFNNK 54

[Close]

BLAST of CsGy7G004730 vs. NCBI nr
Match: XP_008455252.1 (PREDICTED: protein PHLOEM PROTEIN 2-LIKE A1-like [Cucumis melo])

HSP 1 Score: 82.0 bits (201), Expect = 8.8e-13
Identity = 37/53 (69.81%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 1  MCEKESEAKKKLQAVAKYGHCLQVLCKDSDVQLLWPSYDELYAQVSSGIIFNN 54
          MC+K S AK+KL A  KYGHCL+V+CKD+DVQL WPS+DELYAQVS GII ++
Sbjct: 1  MCDKGSVAKEKLGAEVKYGHCLEVICKDADVQLHWPSFDELYAQVSHGIILHD 53

[Close]

BLAST of CsGy7G004730 vs. NCBI nr
Match: XP_022927327.1 (lectin-like [Cucurbita moschata] >XP_022927328.1 lectin-like [Cucurbita moschata] >XP_022927622.1 lectin-like [Cucurbita moschata])

HSP 1 Score: 55.8 bits (133), Expect = 6.7e-05
Identity = 27/56 (48.21%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 1  MCEKESEAKKKLQAVAKYGHCLQVLCKDSDVQLLWPSYDELYAQVSSGIIFNNKAI 57
          M  KE EA++KL    K GHCL V+ K++DV L +PS+ +LY Q+ +GI+ N  AI
Sbjct: 1  MDNKEKEAREKLGGEVKLGHCLDVILKNADVALHYPSFVKLYDQLVAGILLNKGAI 56

[Close]

BLAST of CsGy7G004730 vs. NCBI nr
Match: XP_023520230.1 (uncharacterized protein LOC111783535 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 55.8 bits (133), Expect = 6.7e-05
Identity = 27/56 (48.21%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 1  MCEKESEAKKKLQAVAKYGHCLQVLCKDSDVQLLWPSYDELYAQVSSGIIFNNKAI 57
          M  KE EA++KL    K GHCL V+ K++DV L +PS+ +LY Q+ +GI+ N  AI
Sbjct: 1  MDNKEKEAREKLGGEVKLGHCLDVILKNADVALHYPSFVKLYDQLVAGILLNKGAI 56

[Close]

BLAST of CsGy7G004730 vs. NCBI nr
Match: AAM82559.1 (phloem protein 2 [Cucurbita digitata])

HSP 1 Score: 55.5 bits (132), Expect = 8.8e-05
Identity = 27/56 (48.21%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 1  MCEKESEAKKKLQAVAKYGHCLQVLCKDSDVQLLWPSYDELYAQVSSGIIFNNKAI 57
          M  KE EA++KL    K GHCL V+ K++DV L +PS+ +LY Q+ +GI+ N  AI
Sbjct: 1  MDNKEKEAREKLGGEVKLGHCLDVILKNADVALHYPSFLKLYDQLVAGILLNKGAI 56

[Close]

BLAST of CsGy7G004730 vs. TrEMBL
Match: tr|A0A1S3C1Q4|A0A1S3C1Q4_CUCME (protein PHLOEM PROTEIN 2-LIKE A1-like OS=Cucumis melo OX=3656 GN=LOC103495460 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.8e-13
Identity = 37/53 (69.81%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 1  MCEKESEAKKKLQAVAKYGHCLQVLCKDSDVQLLWPSYDELYAQVSSGIIFNN 54
          MC+K S AK+KL A  KYGHCL+V+CKD+DVQL WPS+DELYAQVS GII ++
Sbjct: 1  MCDKGSVAKEKLGAEVKYGHCLEVICKDADVQLHWPSFDELYAQVSHGIILHD 53

[Close]

BLAST of CsGy7G004730 vs. TrEMBL
Match: tr|Q42383|Q42383_CUCMA (Dimeric phloem specific lectin PP2 OS=Cucurbita maxima OX=3661 GN=PP2 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.8e-05
Identity = 27/56 (48.21%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 1  MCEKESEAKKKLQAVAKYGHCLQVLCKDSDVQLLWPSYDELYAQVSSGIIFNNKAI 57
          M  KE EA++KL    K GHCL V+ K++DV L +PS+ +LY Q+ +GI+ N  AI
Sbjct: 1  MDNKEKEAREKLGGEVKLGHCLDVILKNADVALHYPSFLKLYDQLVAGILLNKGAI 56

[Close]

BLAST of CsGy7G004730 vs. TrEMBL
Match: tr|Q8LK67|Q8LK67_9ROSI (Phloem lectin OS=Cucurbita argyrosperma subsp. sororia OX=37648 GN=PP2 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.8e-05
Identity = 27/56 (48.21%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 1  MCEKESEAKKKLQAVAKYGHCLQVLCKDSDVQLLWPSYDELYAQVSSGIIFNNKAI 57
          M  KE EA++KL    K GHCL V+ K++DV L +PS+ +LY Q+ +GI+ N  AI
Sbjct: 1  MNHKEKEAREKLGGEVKLGHCLDVILKNADVALHYPSFLKLYDQLVAGILLNKGAI 56

[Close]

BLAST of CsGy7G004730 vs. TrEMBL
Match: tr|Q9LLT3|Q9LLT3_CUCMO (Phloem protein 2 OS=Cucurbita moschata OX=3662 GN=pp2 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.8e-05
Identity = 27/56 (48.21%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 1  MCEKESEAKKKLQAVAKYGHCLQVLCKDSDVQLLWPSYDELYAQVSSGIIFNNKAI 57
          M  KE EA++KL    K GHCL V+ K++DV L +PS+ +LY Q+ +GI+ N  AI
Sbjct: 1  MDNKEREAREKLGGEVKLGHCLDVILKNADVALHYPSFVKLYDQLVAGILLNKGAI 56

[Close]

BLAST of CsGy7G004730 vs. TrEMBL
Match: tr|Q7DLM2|Q7DLM2_CUCMA (PP2 lectin polypeptide OS=Cucurbita maxima OX=3661 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.8e-05
Identity = 27/56 (48.21%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 1  MCEKESEAKKKLQAVAKYGHCLQVLCKDSDVQLLWPSYDELYAQVSSGIIFNNKAI 57
          M  KE EA++KL    K GHCL V+ K++DV L +PS+ +LY Q+ +GI+ N  AI
Sbjct: 1  MDNKEKEAREKLGGEVKLGHCLDVILKNADVALHYPSFLKLYDQLVAGILLNKGAI 56

The following BLAST results are available for this feature:

BLAST of CsGy7G004730 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136858.1	1.6e-22	100.00	PREDICTED: uncharacterized protein PHLOEM PROTEIN 2-LIKE A4 [Cucumis sativus]	[more]
XP_008455252.1	8.8e-13	69.81	PREDICTED: protein PHLOEM PROTEIN 2-LIKE A1-like [Cucumis melo]	[more]
XP_022927327.1	6.7e-05	48.21	lectin-like [Cucurbita moschata] >XP_022927328.1 lectin-like [Cucurbita moschata...	[more]
XP_023520230.1	6.7e-05	48.21	uncharacterized protein LOC111783535 [Cucurbita pepo subsp. pepo]	[more]
AAM82559.1	8.8e-05	48.21	phloem protein 2 [Cucurbita digitata]	[more]

BLAST of CsGy7G004730 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy7G004730 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy7G004730 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C1Q4\|A0A1S3C1Q4_CUCME	5.8e-13	69.81	protein PHLOEM PROTEIN 2-LIKE A1-like OS=Cucumis melo OX=3656 GN=LOC103495460 PE...	[more]
tr\|Q42383\|Q42383_CUCMA	5.8e-05	48.21	Dimeric phloem specific lectin PP2 OS=Cucurbita maxima OX=3661 GN=PP2 PE=2 SV=1	[more]
tr\|Q8LK67\|Q8LK67_9ROSI	5.8e-05	48.21	Phloem lectin OS=Cucurbita argyrosperma subsp. sororia OX=37648 GN=PP2 PE=2 SV=1	[more]
tr\|Q9LLT3\|Q9LLT3_CUCMO	5.8e-05	48.21	Phloem protein 2 OS=Cucurbita moschata OX=3662 GN=pp2 PE=2 SV=1	[more]
tr\|Q7DLM2\|Q7DLM2_CUCMA	5.8e-05	48.21	PP2 lectin polypeptide OS=Cucurbita maxima OX=3661 PE=2 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G004730.1	CsGy7G004730.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy7G004730	Bhi05G000639	Wax gourd	cgybwgoB632

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy7G004730	Cucurbita maxima (Rimu)	cgybcmaB895
CsGy7G004730	Cucurbita maxima (Rimu)	cgybcmaB944
CsGy7G004730	Cucurbita maxima (Rimu)	cgybcmaB949
CsGy7G004730	Cucurbita moschata (Rifu)	cgybcmoB881
CsGy7G004730	Cucurbita moschata (Rifu)	cgybcmoB927
CsGy7G004730	Cucurbita moschata (Rifu)	cgybcmoB931
CsGy7G004730	Cucurbita pepo (Zucchini)	cgybcpeB910
CsGy7G004730	Cucurbita pepo (Zucchini)	cgybcpeB914
CsGy7G004730	Cucurbita pepo (Zucchini)	cgybcpeB969
CsGy7G004730	Cucumber (Chinese Long) v2	cgybcuB324
CsGy7G004730	Bottle gourd (USVL1VR-Ls)	cgyblsiB469
CsGy7G004730	Bottle gourd (USVL1VR-Ls)	cgyblsiB489
CsGy7G004730	Melon (DHL92) v3.5.1	cgybmeB468
CsGy7G004730	Melon (DHL92) v3.6.1	cgybmedB465
CsGy7G004730	Watermelon (Charleston Gray)	cgybwcgB489
CsGy7G004730	Watermelon (97103) v1	cgybwmB524
CsGy7G004730	Wild cucumber (PI 183967)	cgybcpiB332
CsGy7G004730	Silver-seed gourd	carcgybB0643
CsGy7G004730	Silver-seed gourd	carcgybB0731
CsGy7G004730	Cucumber (Chinese Long) v3	cgybcucB348
CsGy7G004730	Watermelon (97103) v2	cgybwmbB546