CsGy7G003920 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy7G003920
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Wound-responsive family protein
Location	Chr7 : 2958592 .. 2958879 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTGCTGGAAAAAGTTGGACTACAGCGGCGGCGGCGAGTATAGGGGCGGTGGAGGCGTTGAAAGATCAAGGGCATTTATGGAGGTTGAATAATAAGTATGGTGTGAGAGCAATTTCGTCTCATCACAACAAGCTTTCTTCTTCTTCTTCTTCTTCTTCGAAGTCTTCAGCTTCTGTAATCGCGGATTCTAGTGAAGTTAAAAGGGAATTAGATCATAGTAAGCCCAAACAGTCTGAAGAATCTCTTAGAACTGTTATGTACTTGAGTTGTTGGGGTCCTTACTGA

mRNA sequence

ATGTGTGCTGGAAAAAGTTGGACTACAGCGGCGGCGGCGAGTATAGGGGCGGTGGAGGCGTTGAAAGATCAAGGGCATTTATGGAGGTTGAATAATAAGTATGGTGTGAGAGCAATTTCGTCTCATCACAACAAGCTTTCTTCTTCTTCTTCTTCTTCTTCGAAGTCTTCAGCTTCTGTAATCGCGGATTCTAGTGAAGTTAAAAGGGAATTAGATCATAGTAAGCCCAAACAGTCTGAAGAATCTCTTAGAACTGTTATGTACTTGAGTTGTTGGGGTCCTTACTGA

Coding sequence (CDS)

ATGTGTGCTGGAAAAAGTTGGACTACAGCGGCGGCGGCGAGTATAGGGGCGGTGGAGGCGTTGAAAGATCAAGGGCATTTATGGAGGTTGAATAATAAGTATGGTGTGAGAGCAATTTCGTCTCATCACAACAAGCTTTCTTCTTCTTCTTCTTCTTCTTCGAAGTCTTCAGCTTCTGTAATCGCGGATTCTAGTGAAGTTAAAAGGGAATTAGATCATAGTAAGCCCAAACAGTCTGAAGAATCTCTTAGAACTGTTATGTACTTGAGTTGTTGGGGTCCTTACTGA

Protein sequence

MCAGKSWTTAAAASIGAVEALKDQGHLWRLNNKYGVRAISSHHNKLSSSSSSSSKSSASVIADSSEVKRELDHSKPKQSEESLRTVMYLSCWGPY

Homology

[Close]

BLAST of CsGy7G003920 vs. NCBI nr
Match: KGN43580.1 (hypothetical protein Csa_7G046680 [Cucumis sativus])

HSP 1 Score: 142.9 bits (359), Expect = 5.6e-31
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MCAGKSWTTAAAASIGAVEALKDQGHLWRLNNKYGVRAISXXXXXXXXXXXXXXXXXXXX 60
          MCAGKSWTTAAAASIGAVEALKDQGHLWRLNNKYGVRAISXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MCAGKSWTTAAAASIGAVEALKDQGHLWRLNNKYGVRAISXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXSSEVKRELDHSKPKQSEESLRTVMYLSCWGPY 96
          XXXSSEVKRELDHSKPKQSEESLRTVMYLSCWGPY
Sbjct: 61 XXXSSEVKRELDHSKPKQSEESLRTVMYLSCWGPY 95

[Close]

BLAST of CsGy7G003920 vs. NCBI nr
Match: XP_012070670.1 (uncharacterized protein LOC105632826 [Jatropha curcas] >KDP38956.1 hypothetical protein JCGZ_00713 [Jatropha curcas])

HSP 1 Score: 65.9 bits (159), Expect = 8.7e-08
Identity = 43/91 (47.25%), Postives = 50/91 (54.95%), Query Frame = 0


Query: 4  GKSWTTAAAASIGAVEALKDQGHLWRLNNKYGVRAISXXXXXXXXXXXXXXXXXXXXXXX 63
          G++W   AAASIG VEALKDQG L R N+   +R+I                        
Sbjct: 5  GRAW--VAAASIGVVEALKDQG-LCRWNS--ALRSIQQHAKNNVKSYYSNQPKNMFSALS 64

Query: 64 SSEVKRELDHSKPKQSEESLRTVMYLSCWGP 95
          SS + + L   K KQSEESLRTVMYLSCWGP
Sbjct: 65 SSALSKRLRDEKLKQSEESLRTVMYLSCWGP 90

[Close]

BLAST of CsGy7G003920 vs. NCBI nr
Match: XP_002525775.1 (uncharacterized protein LOC8282442 [Ricinus communis] >EEF36611.1 conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 63.9 bits (154), Expect = 3.3e-07
Identity = 39/83 (46.99%), Postives = 47/83 (56.63%), Query Frame = 0


Query: 12 AASIGAVEALKDQGHLWRLNNKYGVRAISXXXXXXXXXXXXXXXXXXXXXXXSSEVKREL 71
          AASIG VEALKDQG L R N  Y  R+I                        S+++ ++L
Sbjct: 11 AASIGVVEALKDQG-LCRWN--YAFRSIQQHAKNNIRRSYSQHPKMLSSLSSSADLSKKL 70

Query: 72 DHSKPKQSEESLRTVMYLSCWGP 95
          +  K K+SEESLRTVMYLSCWGP
Sbjct: 71 EDEKLKKSEESLRTVMYLSCWGP 90

[Close]

BLAST of CsGy7G003920 vs. NCBI nr
Match: XP_004487336.1 (PREDICTED: uncharacterized protein LOC101509772 [Cicer arietinum])

HSP 1 Score: 63.5 bits (153), Expect = 4.3e-07
Identity = 42/100 (42.00%), Postives = 53/100 (53.00%), Query Frame = 0


Query: 5  KSWTTAAAASIGAVEALKDQGHLWRLNN---------KYGVRAISXXXXXXXXXXXXXXX 64
          ++WT + A S+G VEALKDQG + R N+         K+ +R++S               
Sbjct: 6  RAWTWSVATSVGVVEALKDQG-ICRWNSVIRSAQQHAKHNIRSLS--------------- 65

Query: 65 XXXXXXXXSSEVKREL-DHSKPKQSEESLRTVMYLSCWGP 95
                  SS V  +L D  K KQSEESLRTVMYLSCWGP
Sbjct: 66 -QANNFSSSSSVATKLRDEKKAKQSEESLRTVMYLSCWGP 88

[Close]

BLAST of CsGy7G003920 vs. NCBI nr
Match: XP_002275507.1 (PREDICTED: uncharacterized protein LOC100247673 [Vitis vinifera])

HSP 1 Score: 63.2 bits (152), Expect = 5.7e-07
Identity = 43/92 (46.74%), Postives = 48/92 (52.17%), Query Frame = 0


Query: 4  GKSWTTAAAASIGAVEALKDQGHL-WRLNNKYGVRAISXXXXXXXXXXXXXXXXXXXXXX 63
          GK+W    AAS+GAVEALKDQG   W     Y +R+I                       
Sbjct: 5  GKAW--IVAASVGAVEALKDQGFCRW----NYTMRSIHQHARNSLRSFSQVKKLSSSSAM 64

Query: 64 XSSEVKRELDHSKPKQSEESLRTVMYLSCWGP 95
           SS V+ E    K KQSEESLRTVMYLSCWGP
Sbjct: 65 VSSRVRDE----KAKQSEESLRTVMYLSCWGP 86

[Close]

BLAST of CsGy7G003920 vs. TAIR10
Match: AT4G10270.1 (Wound-responsive family protein)

HSP 1 Score: 57.0 bits (136), Expect = 7.3e-09
Identity = 39/90 (43.33%), Postives = 48/90 (53.33%), Query Frame = 0


Query: 5  KSWTTAAAASIGAVEALKDQGHLWRLNNKYGVRAISXXXXXXXXXXXXXXXXXXXXXXXS 64
          K+WT   A SIGAVEALKDQ  L R N  Y +R+++                       S
Sbjct: 6  KAWT--VAVSIGAVEALKDQLGLCRWN--YILRSVN--QHLRNNVRSVSQGKRFSSSSVS 65

Query: 65 SEVKRELDHSKPKQSEESLRTVMYLSCWGP 95
          + V    +  K K++EESLRTVMYLSCWGP
Sbjct: 66 AAVTSSGESEKAKKAEESLRTVMYLSCWGP 89

[Close]

BLAST of CsGy7G003920 vs. TAIR10
Match: AT4G10265.1 (Wound-responsive family protein)

HSP 1 Score: 54.7 bits (130), Expect = 3.6e-08
Identity = 41/97 (42.27%), Postives = 52/97 (53.61%), Query Frame = 0


Query: 3  AGKSWTTAAAASIGAVEALKDQGHLWRLNNKYGVRAISXXXXXXXXXXXXXXXXXXXXXX 62
          A K+W    AASIGAVEALKDQ  + R N  Y +R+ +                      
Sbjct: 4  ASKTW--MVAASIGAVEALKDQLGVCRWN--YVIRSANQYLRNNLRSV------------ 63

Query: 63 XSSEVKR----ELDH-SKPKQSEESLRTVMYLSCWGP 95
            S+ K+     +D+ +K KQ+EESLRTVMYLSCWGP
Sbjct: 64 --SQAKKLSSSSIDYTNKTKQAEESLRTVMYLSCWGP 82

[Close]

BLAST of CsGy7G003920 vs. TrEMBL
Match: tr|A0A0A0K1Q6|A0A0A0K1Q6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046680 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.7e-31
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MCAGKSWTTAAAASIGAVEALKDQGHLWRLNNKYGVRAISXXXXXXXXXXXXXXXXXXXX 60
          MCAGKSWTTAAAASIGAVEALKDQGHLWRLNNKYGVRAISXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MCAGKSWTTAAAASIGAVEALKDQGHLWRLNNKYGVRAISXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXSSEVKRELDHSKPKQSEESLRTVMYLSCWGPY 96
          XXXSSEVKRELDHSKPKQSEESLRTVMYLSCWGPY
Sbjct: 61 XXXSSEVKRELDHSKPKQSEESLRTVMYLSCWGPY 95

[Close]

BLAST of CsGy7G003920 vs. TrEMBL
Match: tr|A0A067KRV6|A0A067KRV6_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_00713 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.8e-08
Identity = 43/91 (47.25%), Postives = 50/91 (54.95%), Query Frame = 0


Query: 4  GKSWTTAAAASIGAVEALKDQGHLWRLNNKYGVRAISXXXXXXXXXXXXXXXXXXXXXXX 63
          G++W   AAASIG VEALKDQG L R N+   +R+I                        
Sbjct: 5  GRAW--VAAASIGVVEALKDQG-LCRWNS--ALRSIQQHAKNNVKSYYSNQPKNMFSALS 64

Query: 64 SSEVKRELDHSKPKQSEESLRTVMYLSCWGP 95
          SS + + L   K KQSEESLRTVMYLSCWGP
Sbjct: 65 SSALSKRLRDEKLKQSEESLRTVMYLSCWGP 90

[Close]

BLAST of CsGy7G003920 vs. TrEMBL
Match: tr|B9SIF6|B9SIF6_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1255920 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-07
Identity = 39/83 (46.99%), Postives = 47/83 (56.63%), Query Frame = 0


Query: 12 AASIGAVEALKDQGHLWRLNNKYGVRAISXXXXXXXXXXXXXXXXXXXXXXXSSEVKREL 71
          AASIG VEALKDQG L R N  Y  R+I                        S+++ ++L
Sbjct: 11 AASIGVVEALKDQG-LCRWN--YAFRSIQQHAKNNIRRSYSQHPKMLSSLSSSADLSKKL 70

Query: 72 DHSKPKQSEESLRTVMYLSCWGP 95
          +  K K+SEESLRTVMYLSCWGP
Sbjct: 71 EDEKLKKSEESLRTVMYLSCWGP 90

[Close]

BLAST of CsGy7G003920 vs. TrEMBL
Match: tr|A0A1S2XCT4|A0A1S2XCT4_CICAR (uncharacterized protein LOC101509772 OS=Cicer arietinum OX=3827 GN=LOC101509772 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.9e-07
Identity = 42/100 (42.00%), Postives = 53/100 (53.00%), Query Frame = 0


Query: 5  KSWTTAAAASIGAVEALKDQGHLWRLNN---------KYGVRAISXXXXXXXXXXXXXXX 64
          ++WT + A S+G VEALKDQG + R N+         K+ +R++S               
Sbjct: 6  RAWTWSVATSVGVVEALKDQG-ICRWNSVIRSAQQHAKHNIRSLS--------------- 65

Query: 65 XXXXXXXXSSEVKREL-DHSKPKQSEESLRTVMYLSCWGP 95
                  SS V  +L D  K KQSEESLRTVMYLSCWGP
Sbjct: 66 -QANNFSSSSSVATKLRDEKKAKQSEESLRTVMYLSCWGP 88

[Close]

BLAST of CsGy7G003920 vs. TrEMBL
Match: tr|F6HHI6|F6HHI6_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0057g00080 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.7e-07
Identity = 43/92 (46.74%), Postives = 48/92 (52.17%), Query Frame = 0


Query: 4  GKSWTTAAAASIGAVEALKDQGHL-WRLNNKYGVRAISXXXXXXXXXXXXXXXXXXXXXX 63
          GK+W    AAS+GAVEALKDQG   W     Y +R+I                       
Sbjct: 5  GKAW--IVAASVGAVEALKDQGFCRW----NYTMRSIHQHARNSLRSFSQVKKLSSSSAM 64

Query: 64 XSSEVKRELDHSKPKQSEESLRTVMYLSCWGP 95
           SS V+ E    K KQSEESLRTVMYLSCWGP
Sbjct: 65 VSSRVRDE----KAKQSEESLRTVMYLSCWGP 86

The following BLAST results are available for this feature:

BLAST of CsGy7G003920 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43580.1	5.6e-31	100.00	hypothetical protein Csa_7G046680 [Cucumis sativus]	[more]
XP_012070670.1	8.7e-08	47.25	uncharacterized protein LOC105632826 [Jatropha curcas] >KDP38956.1 hypothetical ...	[more]
XP_002525775.1	3.3e-07	46.99	uncharacterized protein LOC8282442 [Ricinus communis] >EEF36611.1 conserved hypo...	[more]
XP_004487336.1	4.3e-07	42.00	PREDICTED: uncharacterized protein LOC101509772 [Cicer arietinum]	[more]
XP_002275507.1	5.7e-07	46.74	PREDICTED: uncharacterized protein LOC100247673 [Vitis vinifera]	[more]

BLAST of CsGy7G003920 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G10270.1	7.3e-09	43.33	Wound-responsive family protein	[more]
AT4G10265.1	3.6e-08	42.27	Wound-responsive family protein	[more]

BLAST of CsGy7G003920 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy7G003920 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K1Q6\|A0A0A0K1Q6_CUCSA	3.7e-31	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046680 PE=4 SV=1	[more]
tr\|A0A067KRV6\|A0A067KRV6_JATCU	5.8e-08	47.25	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_00713 PE=4 SV=1	[more]
tr\|B9SIF6\|B9SIF6_RICCO	2.2e-07	46.99	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1255920 PE=4 SV=1	[more]
tr\|A0A1S2XCT4\|A0A1S2XCT4_CICAR	2.9e-07	42.00	uncharacterized protein LOC101509772 OS=Cicer arietinum OX=3827 GN=LOC101509772 ...	[more]
tr\|F6HHI6\|F6HHI6_VITVI	3.7e-07	46.74	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0057g00080 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR022251	DUF3774_wound-induced

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G003920.1	CsGy7G003920.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022251	Protein of unknown function wound-induced	PFAM	PF12609	DUF3774	coord: 12..94 e-value: 2.8E-22 score: 79.4
IPR022251	Protein of unknown function wound-induced	PANTHER	PTHR33090	FAMILY NOT NAMED	coord: 4..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..79

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy7G003920	Cla007725	Watermelon (97103) v1	cgybwmB558
CsGy7G003920	Csa7G046680	Cucumber (Chinese Long) v2	cgybcuB324
CsGy7G003920	MELO3C018766	Melon (DHL92) v3.5.1	cgybmeB468
CsGy7G003920	CSPI07G04290	Wild cucumber (PI 183967)	cgybcpiB332
CsGy7G003920	CmaCh11G018560	Cucurbita maxima (Rimu)	cgybcmaB896
CsGy7G003920	CmoCh11G019340	Cucurbita moschata (Rifu)	cgybcmoB877
CsGy7G003920	Lsi11G015160	Bottle gourd (USVL1VR-Ls)	cgyblsiB462
CsGy7G003920	MELO3C018766.2	Melon (DHL92) v3.6.1	cgybmedB465
CsGy7G003920	Cla97C02G027750	Watermelon (97103) v2	cgybwmbB502
CsGy7G003920	Bhi05G001574	Wax gourd	cgybwgoB633

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy7G003920	Cucurbita pepo (Zucchini)	cgybcpeB910
CsGy7G003920	Cucurbita pepo (Zucchini)	cgybcpeB964
CsGy7G003920	Cucurbita pepo (Zucchini)	cgybcpeB973
CsGy7G003920	Watermelon (Charleston Gray)	cgybwcgB497
CsGy7G003920	Watermelon (Charleston Gray)	cgybwcgB506
CsGy7G003920	Wild cucumber (PI 183967)	cgybcpiB299
CsGy7G003920	Silver-seed gourd	carcgybB0032
CsGy7G003920	Silver-seed gourd	carcgybB0641
CsGy7G003920	Silver-seed gourd	carcgybB0717
CsGy7G003920	Silver-seed gourd	carcgybB0864
CsGy7G003920	Cucumber (Chinese Long) v3	cgybcucB311
CsGy7G003920	Cucumber (Chinese Long) v3	cgybcucB348
CsGy7G003920	Wax gourd	cgybwgoB655
CsGy7G003920	Bottle gourd (USVL1VR-Ls)	cgyblsiB457
CsGy7G003920	Cucumber (Gy14) v2	cgybcgybB153
CsGy7G003920	Cucurbita maxima (Rimu)	cgybcmaB909
CsGy7G003920	Cucurbita maxima (Rimu)	cgybcmaB944
CsGy7G003920	Cucurbita maxima (Rimu)	cgybcmaB960
CsGy7G003920	Cucurbita moschata (Rifu)	cgybcmoB892
CsGy7G003920	Cucurbita moschata (Rifu)	cgybcmoB927
CsGy7G003920	Cucurbita moschata (Rifu)	cgybcmoB943