CsGy7G002770 (gene) Cucumber (Gy14) v2

Overview
NameCsGy7G002770
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionPathogen-induced protein CuPi1
LocationChr7 : 2220545 .. 2221274 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCTTCAAAACAAATTCAATTCTCTCTCCATAATAGTGAGAAAGGAATAAGAATGAGTAGTGGAAAGGGACGTGGTTATTCATTGCTGGCTTTTTTCTTCTTCTTCGTTCTCTTCATCTCCTCGGAGGTGACTGCAGCAAGGAAGCTGAAGATGCACCAAAACAACGGTGAGCTTCTATTTATATTATGATATTATGTGGCATTCAAAATGATTGTTATTATGAAACAAATTTTGATAAAATTGAACATGGAAGGAAGCATTAAATTGAAAATGGTTGTTTTTAAAAATAAACTATTTTTGTTGATTTATTTTAAATGGTTTCCAAACGCAGAAAAGGGAATTGTTTACTTGACTCCGAGAACAGCAATTCGCAACAAACCAATCTGCGATGGTAGCGGTCCTTATAGCCGTTGCATCCCTAGAAGTAAGCCACCAAAGGAAAAGTGCAATCCTTATGTTAGAGGATGCAGCTTGCCGTAGACTGAGGACTATCACCTGTTTTTCAAAAAATGAATAAATGATTCCGAAATCACATGGATTTAAATCCTATTTTAAAGTTTTTGTGTATTAATTTATCCTTTCAAAAAAAGTGTGTGTAATTAATATATATAGTAGTTTATATGATATATGTCAGTTTGGAGTTTAGTATGTTTTATTGTATGGTTATCTCTATGTATTCAGAATCAATTTGGACTTTCCATATATATATATTACCAAACATTTGGACTA

mRNA sequence

ATCTTCAAAACAAATTCAATTCTCTCTCCATAATAGTGAGAAAGGAATAAGAATGAGTAGTGGAAAGGGACGTGGTTATTCATTGCTGGCTTTTTTCTTCTTCTTCGTTCTCTTCATCTCCTCGGAGGTGACTGCAGCAAGGAAGCTGAAGATGCACCAAAACAACGAAAAGGGAATTGTTTACTTGACTCCGAGAACAGCAATTCGCAACAAACCAATCTGCGATGGTAGCGGTCCTTATAGCCGTTGCATCCCTAGAAGTAAGCCACCAAAGGAAAAGTGCAATCCTTATGTTAGAGGATGCAGCTTGCCGTAGACTGAGGACTATCACCTGTTTTTCAAAAAATGAATAAATGATTCCGAAATCACATGGATTTAAATCCTATTTTAAAGTTTTTGTGTATTAATTTATCCTTTCAAAAAAAGTGTGTGTAATTAATATATATAGTAGTTTATATGATATATGTCAGTTTGGAGTTTAGTATGTTTTATTGTATGGTTATCTCTATGTATTCAGAATCAATTTGGACTTTCCATATATATATATTACCAAACATTTGGACTA

Coding sequence (CDS)

ATGAGTAGTGGAAAGGGACGTGGTTATTCATTGCTGGCTTTTTTCTTCTTCTTCGTTCTCTTCATCTCCTCGGAGGTGACTGCAGCAAGGAAGCTGAAGATGCACCAAAACAACGAAAAGGGAATTGTTTACTTGACTCCGAGAACAGCAATTCGCAACAAACCAATCTGCGATGGTAGCGGTCCTTATAGCCGTTGCATCCCTAGAAGTAAGCCACCAAAGGAAAAGTGCAATCCTTATGTTAGAGGATGCAGCTTGCCGTAG

Protein sequence

MSSGKGRGYSLLAFFFFFVLFISSEVTAARKLKMHQNNEKGIVYLTPRTAIRNKPICDGSGPYSRCIPRSKPPKEKCNPYVRGCSLP
Homology
[Close]
BLAST of CsGy7G002770 vs. NCBI nr
Match: XP_004144528.1 (PREDICTED: uncharacterized protein LOC101208804 [Cucumis sativus] >AAB71340.1 pathogen-induced protein CuPi1 [Cucumis sativus] >KGN43457.1 Pathogen-induced protein CuPi1 [Cucumis sativus])

HSP 1 Score: 165.6 bits (418), Expect = 7.4e-38
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MSSGKGRGYSLLAFXXXXXXXXSSEVTAARKLKMHQNNEKGIVYLTPRTAIRNKPICDGS 60
          MSSGKGRGYSLLAFXXXXXXXXSSEVTAARKLKMHQNNEKGIVYLTPRTAIRNKPICDGS
Sbjct: 1  MSSGKGRGYSLLAFXXXXXXXXSSEVTAARKLKMHQNNEKGIVYLTPRTAIRNKPICDGS 60

Query: 61 GPYSRCIPRSKPPKEKCNPYVRGCSLP 88
          GPYSRCIPRSKPPKEKCNPYVRGCSLP
Sbjct: 61 GPYSRCIPRSKPPKEKCNPYVRGCSLP 87

[Close]
BLAST of CsGy7G002770 vs. TrEMBL
Match: tr|O24512|O24512_CUCSA (Pathogen-induced protein CuPi1 OS=Cucumis sativus OX=3659 GN=Csa_7G037610 PE=2 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 4.9e-38
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MSSGKGRGYSLLAFXXXXXXXXSSEVTAARKLKMHQNNEKGIVYLTPRTAIRNKPICDGS 60
          MSSGKGRGYSLLAFXXXXXXXXSSEVTAARKLKMHQNNEKGIVYLTPRTAIRNKPICDGS
Sbjct: 1  MSSGKGRGYSLLAFXXXXXXXXSSEVTAARKLKMHQNNEKGIVYLTPRTAIRNKPICDGS 60

Query: 61 GPYSRCIPRSKPPKEKCNPYVRGCSLP 88
          GPYSRCIPRSKPPKEKCNPYVRGCSLP
Sbjct: 61 GPYSRCIPRSKPPKEKCNPYVRGCSLP 87

The following BLAST results are available for this feature:
BLAST of CsGy7G002770 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004144528.17.4e-38100.00PREDICTED: uncharacterized protein LOC101208804 [Cucumis sativus] >AAB71340.1 pa... [more]
BLAST of CsGy7G002770 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy7G002770 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy7G002770 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|O24512|O24512_CUCSA4.9e-38100.00Pathogen-induced protein CuPi1 OS=Cucumis sativus OX=3659 GN=Csa_7G037610 PE=2 S... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008801RALF
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy7G002770.1CsGy7G002770.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008801Rapid ALkalinization FactorPFAMPF05498RALFcoord: 25..85
e-value: 1.4E-5
score: 25.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy7G002770Csa7G037610Cucumber (Chinese Long) v2cgybcuB324
CsGy7G002770MELO3C018878Melon (DHL92) v3.5.1cgybmeB468
CsGy7G002770CSPI07G03100Wild cucumber (PI 183967)cgybcpiB332
CsGy7G002770MELO3C018878.2Melon (DHL92) v3.6.1cgybmedB465
CsGy7G002770CsaV3_7G002980Cucumber (Chinese Long) v3cgybcucB348
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy7G002770Cucumber (Chinese Long) v3cgybcucB316
CsGy7G002770Cucumber (Chinese Long) v3cgybcucB349
CsGy7G002770Watermelon (97103) v2cgybwmbB500
CsGy7G002770Watermelon (97103) v2cgybwmbB502
CsGy7G002770Wax gourdcgybwgoB640
CsGy7G002770Wax gourdcgybwgoB641
CsGy7G002770Wax gourdcgybwgoB650
CsGy7G002770Cucumber (Gy14) v2cgybcgybB072
CsGy7G002770Cucurbita maxima (Rimu)cgybcmaB896
CsGy7G002770Cucurbita maxima (Rimu)cgybcmaB944
CsGy7G002770Cucurbita moschata (Rifu)cgybcmoB877
CsGy7G002770Cucurbita moschata (Rifu)cgybcmoB927
CsGy7G002770Cucurbita pepo (Zucchini)cgybcpeB910
CsGy7G002770Cucurbita pepo (Zucchini)cgybcpeB919
CsGy7G002770Cucurbita pepo (Zucchini)cgybcpeB964
CsGy7G002770Cucumber (Chinese Long) v2cgybcuB296
CsGy7G002770Cucumber (Chinese Long) v2cgybcuB328
CsGy7G002770Bottle gourd (USVL1VR-Ls)cgyblsiB455
CsGy7G002770Bottle gourd (USVL1VR-Ls)cgyblsiB462
CsGy7G002770Melon (DHL92) v3.5.1cgybmeB467
CsGy7G002770Melon (DHL92) v3.6.1cgybmedB464
CsGy7G002770Watermelon (Charleston Gray)cgybwcgB504
CsGy7G002770Watermelon (Charleston Gray)cgybwcgB506
CsGy7G002770Watermelon (97103) v1cgybwmB565
CsGy7G002770Watermelon (97103) v1cgybwmB566
CsGy7G002770Wild cucumber (PI 183967)cgybcpiB304
CsGy7G002770Silver-seed gourdcarcgybB0217
CsGy7G002770Silver-seed gourdcarcgybB1049