CsGy7G002740 (gene) Cucumber (Gy14) v2

Overview
NameCsGy7G002740
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionexopolygalacturonase-like
LocationChr7 : 2191575 .. 2192094 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGGATTGAGGTCCAACATTATGACATTACTATTACATTTGTTGTTAATGTTGGCATCAACTGCAAAAGGTCAATCCATTTTTGATATCACTACATATGGTGCCAAACCTAATACTGATATTACTCAGGTAAATATATATTAACTTGATAAATTTCGTACTTTATGTATTTTTTTTTTTGTTTAATCAAATGATTCACAATTTATAGGCTTTGGCAAATGCATGGAAGGATGCATGTGCATCGACCTATTCTAGTAAATTGTTGATTCCAATGGGAGTTTACCATCTAAACCAATCCATTCTCCATGGTCCTTGCAAAAGTACTATTGAGGTTCGGATGGAAGGAACATTACAAGCTCATCCAGATCCAATAGGAGATGGGTTGGTTCTTTTTCAATATATCGATCAATTGACATTGTCAGGCACAGGTGCTTTTGATGGTCAAGGAGAAAAAGGTTGGGAAAAGAATGATTGTCACCTGAAGAAAATATGCACTAAACTTCCTATGGTAAATTAA

mRNA sequence

ATGATGGGATTGAGGTCCAACATTATGACATTACTATTACATTTGTTGTTAATGTTGGCATCAACTGCAAAAGGTCAATCCATTTTTGATATCACTACATATGGTGCCAAACCTAATACTGATATTACTCAGGCTTTGGCAAATGCATGGAAGGATGCATGTGCATCGACCTATTCTAGTAAATTGTTGATTCCAATGGGAGTTTACCATCTAAACCAATCCATTCTCCATGGTCCTTGCAAAAGTACTATTGAGGTTCGGATGGAAGGAACATTACAAGCTCATCCAGATCCAATAGGAGATGGGTTGGTTCTTTTTCAATATATCGATCAATTGACATTGTCAGGCACAGGTGCTTTTGATGGTCAAGGAGAAAAAGGTTGGGAAAAGAATGATTGTCACCTGAAGAAAATATGCACTAAACTTCCTATGGTAAATTAA

Coding sequence (CDS)

ATGATGGGATTGAGGTCCAACATTATGACATTACTATTACATTTGTTGTTAATGTTGGCATCAACTGCAAAAGGTCAATCCATTTTTGATATCACTACATATGGTGCCAAACCTAATACTGATATTACTCAGGCTTTGGCAAATGCATGGAAGGATGCATGTGCATCGACCTATTCTAGTAAATTGTTGATTCCAATGGGAGTTTACCATCTAAACCAATCCATTCTCCATGGTCCTTGCAAAAGTACTATTGAGGTTCGGATGGAAGGAACATTACAAGCTCATCCAGATCCAATAGGAGATGGGTTGGTTCTTTTTCAATATATCGATCAATTGACATTGTCAGGCACAGGTGCTTTTGATGGTCAAGGAGAAAAAGGTTGGGAAAAGAATGATTGTCACCTGAAGAAAATATGCACTAAACTTCCTATGGTAAATTAA

Protein sequence

MMGLRSNIMTLLLHLLLMLASTAKGQSIFDITTYGAKPNTDITQALANAWKDACASTYSSKLLIPMGVYHLNQSILHGPCKSTIEVRMEGTLQAHPDPIGDGLVLFQYIDQLTLSGTGAFDGQGEKGWEKNDCHLKKICTKLPMVN
Homology
[Close]
BLAST of CsGy7G002740 vs. NCBI nr
Match: XP_011658677.1 (PREDICTED: exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 290.0 bits (741), Expect = 4.4e-75
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0 

Query: 5   RSNIMTLLLHLLLMLASTAKGQSIFDITTYGAKPNTDITQALANAWKDACASTYSSKLLI 64
           RSNIMTLLLHLLLMLASTAKGQSIFDITTYGAKPNTDITQA ANAWKDACASTYSSKLLI
Sbjct: 63  RSNIMTLLLHLLLMLASTAKGQSIFDITTYGAKPNTDITQAFANAWKDACASTYSSKLLI 122

Query: 65  PMGVYHLNQSILHGPCKSTIEVRMEGTLQAHPDPIGDGLVLFQYIDQLTLSGTGAFDGQG 124
           PMGVYHLNQSILHGPCKSTIEVRMEGTLQAHPDPIGDGLVLFQYIDQLTLSGTGAFDGQG
Sbjct: 123 PMGVYHLNQSILHGPCKSTIEVRMEGTLQAHPDPIGDGLVLFQYIDQLTLSGTGAFDGQG 182

Query: 125 EKGWEKNDCHLKKICTKLPM 145
           EKGWEKNDCHLKKICTKLPM
Sbjct: 183 EKGWEKNDCHLKKICTKLPM 202

[Close]
BLAST of CsGy7G002740 vs. NCBI nr
Match: XP_008455507.2 (PREDICTED: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 259.2 bits (661), Expect = 8.3e-66
Identity = 126/143 (88.11%), Postives = 132/143 (92.31%), Query Frame = 0 

Query: 2   MGLRSNIMTLLLHLLLMLASTAKGQSIFDITTYGAKPNTDITQALANAWKDACASTYSSK 61
           MGLRSNIM LLLHLLLMLASTAK QSIFDITTYGAKPNTDITQ LANAWKDACAST  S+
Sbjct: 122 MGLRSNIMALLLHLLLMLASTAKCQSIFDITTYGAKPNTDITQVLANAWKDACASTNPSQ 181

Query: 62  LLIPMGVYHLNQSILHGPCKSTIEVRMEGTLQAHPDPIGDGLVLFQYIDQLTLSGTGAFD 121
           LLIP GVY LNQS+L GPC STIEVRMEGTLQAHPDPIG GLVLF++IDQLT+SGTGAFD
Sbjct: 182 LLIPTGVYQLNQSLLIGPCNSTIEVRMEGTLQAHPDPIGIGLVLFRHIDQLTISGTGAFD 241

Query: 122 GQGEKGWEKNDCHLKKICTKLPM 145
           GQGEKGWEKNDCHLKK CT+LPM
Sbjct: 242 GQGEKGWEKNDCHLKKACTRLPM 264

[Close]
BLAST of CsGy7G002740 vs. NCBI nr
Match: XP_011658673.1 (PREDICTED: exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 240.4 bits (612), Expect = 4.0e-60
Identity = 117/143 (81.82%), Postives = 130/143 (90.91%), Query Frame = 0 

Query: 1   MMGLRSNIMTLLLHLLLMLASTAKGQSIFDITTYGAKPNTDITQALANAWKDACASTYSS 60
           MMGL+SNIM LLLHLLLMLASTAKGQSIFDITTYGAKPNTDITQALANAWKDACAST SS
Sbjct: 1   MMGLKSNIMALLLHLLLMLASTAKGQSIFDITTYGAKPNTDITQALANAWKDACASTNSS 60

Query: 61  KLLIPMGVYHLNQSILHGPCKSTIEVRMEGTLQAHPDPIGDGLVLFQYIDQLTLSGTGAF 120
            LLIP+GVY LNQSIL GPCKSTI+ R+EGTLQAHP+PIG+ +VLF++IDQLT+SGTGAF
Sbjct: 61  ILLIPIGVYQLNQSILDGPCKSTIDFRLEGTLQAHPNPIGNMMVLFEHIDQLTVSGTGAF 120

Query: 121 DGQGEKGWEKNDCHLKKICTKLP 144
           DGQ +KG +KNDC L+K C K P
Sbjct: 121 DGQRKKGGDKNDCRLEKTCAKFP 143

[Close]
BLAST of CsGy7G002740 vs. NCBI nr
Match: XP_004140444.1 (PREDICTED: exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 218.0 bits (554), Expect = 2.1e-53
Identity = 104/143 (72.73%), Postives = 119/143 (83.22%), Query Frame = 0 

Query: 2   MGLRSNIMTLLLHLLLMLASTAKGQSIFDITTYGAKPNTDITQALANAWKDACASTYSSK 61
           MGLR N +   L LL +LAST KGQS+FD+T YGAKPNTDIT AL NAWK ACAST  SK
Sbjct: 1   MGLRWNFVA-FLSLLFLLASTTKGQSVFDVTRYGAKPNTDITHALLNAWKGACASTSRSK 60

Query: 62  LLIPMGVYHLNQSILHGPCKSTIEVRMEGTLQAHPDPIGDGLVLFQYIDQLTLSGTGAFD 121
           +LIP G+Y L+QS L GPCKS+IE++++GTLQA PDP GDGLV+ +YIDQLTLSGTG FD
Sbjct: 61  VLIPKGIYLLSQSNLKGPCKSSIEIQVQGTLQAPPDPKGDGLVILEYIDQLTLSGTGVFD 120

Query: 122 GQGEKGWEKNDCHLKKICTKLPM 145
           GQG+ GWEKNDCH KKICTKLPM
Sbjct: 121 GQGKAGWEKNDCHKKKICTKLPM 142

[Close]
BLAST of CsGy7G002740 vs. NCBI nr
Match: XP_011652893.1 (PREDICTED: exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 205.7 bits (522), Expect = 1.1e-49
Identity = 103/148 (69.59%), Postives = 118/148 (79.73%), Query Frame = 0 

Query: 2   MGLRSNIMTLLLHLLLMLASTAKGQS-----IFDITTYGAKPNTDITQALANAWKDACAS 61
           MGLRSN +T LL L L+L S AKGQS     +FD+T++GAKPN DIT  L  AWKDACAS
Sbjct: 1   MGLRSNFVT-LLPLFLLLVSNAKGQSAAGGGVFDVTSFGAKPNGDITGPLLVAWKDACAS 60

Query: 62  TYSSKLLIPMGVYHLNQSILHGPCKSTIEVRMEGTLQAHPDPIGDGLVLFQYIDQLTLSG 121
           T  SK+LIP G Y L+QS L GPCKS IE+++EGTLQA PDP GDGL+L +YIDQLT+SG
Sbjct: 61  TTPSKVLIPKGSYGLSQSNLKGPCKSPIELQIEGTLQASPDPKGDGLLLLEYIDQLTVSG 120

Query: 122 TGAFDGQGEKGWEKNDCHLKKICTKLPM 145
           TG  DGQG+ GWEKNDCHLKKICTKLPM
Sbjct: 121 TGVLDGQGKAGWEKNDCHLKKICTKLPM 147

[Close]
BLAST of CsGy7G002740 vs. TAIR10
Match: AT1G78400.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 107.5 bits (267), Expect = 7.3e-24
Identity = 52/125 (41.60%), Postives = 70/125 (56.00%), Query Frame = 0 

Query: 25  GQSIFDITTYGAKPN--TDITQALANAWKDACASTYSSKLLIPMGVYHLNQSILHGPCKS 84
           G+ +FD+ +YGA+ +  TD T A   AWKDAC      ++ IP G ++L      GPCKS
Sbjct: 31  GRKVFDVRSYGARGDGKTDNTMAFTKAWKDACQWKGLPRVYIPFGTFYLGAVAFTGPCKS 90

Query: 85  TIEVRMEGTLQAHPDPIG---DGLVLFQYIDQLTLSGTGAFDGQGEKGWEKNDCHLKKIC 144
            I   ++GTL A  DP     D  ++F+Y+D LT+SG G  DGQG   W  N+C     C
Sbjct: 91  RISFIIKGTLLAPKDPNAIKQDSWIIFRYVDYLTVSGGGILDGQGSYSWPLNNCRQTHNC 150

[Close]
BLAST of CsGy7G002740 vs. TAIR10
Match: AT3G07820.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-21
Identity = 55/145 (37.93%), Postives = 84/145 (57.93%), Query Frame = 0 

Query: 2   MGLRSNIMTLLLHLLLMLASTAKGQSIFDITTYGAKPNTDITQALANAWKDACASTYSSK 61
           MG    + T+ +  LL +++ A      ++ T G+   +DITQAL  A+  AC S+  SK
Sbjct: 1   MGGYFGVSTIFIICLLGISANA------EVFTIGSSSGSDITQALLKAFTSACQSSSPSK 60

Query: 62  LLIPMGVYHLNQSILHGPCKSTIEVRMEGTLQAHPDPI--GDGLVLFQYIDQLTLSGTGA 121
           ++IP G + L +  + GPCK+ IEV ++GT++A  + I   +  V+F  ID   L+G GA
Sbjct: 61  VVIPKGEFKLGEIEMRGPCKAPIEVTLQGTVKADGNAIQGKEKWVVFGNIDGFKLNGGGA 120

Query: 122 FDGQGEKGWEKNDCHLKKICTKLPM 145
           FDG+G   W  N+CH    C KLP+
Sbjct: 121 FDGEGNAAWRVNNCHKTFECKKLPI 139

[Close]
BLAST of CsGy7G002740 vs. TAIR10
Match: AT2G15450.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 98.6 bits (244), Expect = 3.4e-21
Identity = 51/144 (35.42%), Postives = 80/144 (55.56%), Query Frame = 0 

Query: 7   NIMTLLLHLLLMLASTAKGQSIFDITTYGAKPN--TDITQALANAWKDACAS-TYSSKLL 66
           N +   L  +++ + +     +F++  +GAKP+  TD   A  + W  AC   + SSK+ 
Sbjct: 9   NALCFCLFFIVVASRSTVRPKVFNVQRHGAKPDGKTDNANAFTSIWSRACKRISGSSKIY 68

Query: 67  IPMGVYHLNQSILHGPCKSTIEVRMEGTLQAHPDPIG---DGLVLFQYIDQLTLSGTGAF 126
           +P G ++L      GPCK+ IE  ++GTL A  +P     D  + F+YI+ L++SG+G  
Sbjct: 69  VPKGTFYLGGVEFVGPCKNPIEFIIDGTLLAPANPSDIKQDTWINFRYINNLSISGSGTL 128

Query: 127 DGQGEKGWEKNDCHLKKICTKLPM 145
           DGQG++ W  NDCH    C KL M
Sbjct: 129 DGQGKQSWPHNDCHTNPNCPKLAM 152

[Close]
BLAST of CsGy7G002740 vs. TAIR10
Match: AT2G15460.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 98.2 bits (243), Expect = 4.4e-21
Identity = 50/138 (36.23%), Postives = 78/138 (56.52%), Query Frame = 0 

Query: 13  LHLLLMLASTAKGQSIFDITTYGAKPN--TDITQALANAWKDACAS-TYSSKLLIPMGVY 72
           L  +++ + +     +F++  +GAKP+  TD   A  + W  AC   + SSK+ +P G +
Sbjct: 15  LFFIVVASRSTVRPKVFNVQRHGAKPDGKTDNANAFTSIWSRACKRISGSSKIYVPKGTF 74

Query: 73  HLNQSILHGPCKSTIEVRMEGTLQAHPDPIG---DGLVLFQYIDQLTLSGTGAFDGQGEK 132
           +L      GPCK+ IE  ++GTL A  +P     D  + F+YI+ L++SG+G  DGQG++
Sbjct: 75  YLGGVEFVGPCKNPIEFIIDGTLLAPANPSDIKQDTWINFRYINNLSISGSGTLDGQGKQ 134

Query: 133 GWEKNDCHLKKICTKLPM 145
            W  NDCH    C KL M
Sbjct: 135 SWPHNDCHTNPNCPKLAM 152

[Close]
BLAST of CsGy7G002740 vs. TAIR10
Match: AT1G43090.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 97.4 bits (241), Expect = 7.5e-21
Identity = 54/152 (35.53%), Postives = 83/152 (54.61%), Query Frame = 0 

Query: 1   MMGLRSNIMTLLLHLLLMLASTAK--GQSIFDITTYGAKPN--TDITQALANAWKDACAS 60
           M+ + S    L L  L ++ ++       +F++  YG++P+  TD   A  + WK AC  
Sbjct: 1   MVSIASTFKALCLSFLFIVVASRPTIRPKVFNVRRYGSRPDGKTDNANAFTSVWKHACTR 60

Query: 61  -TYSSKLLIPMGVYHLNQSILHGPCKSTIEVRMEGTLQAHPDPIG---DGLVLFQYIDQL 120
            + SSK+ +P G ++L      GPCK+ IE  ++GTL A  +P     D  + F+YI+ L
Sbjct: 61  ISGSSKIYVPKGTFYLGGVEFVGPCKNPIEFVIDGTLLAPANPRDIKQDTWINFRYINNL 120

Query: 121 TLSGTGAFDGQGEKGWEKNDCHLKKICTKLPM 145
           ++SG+G  DGQG+  W  NDCH    C KL M
Sbjct: 121 SISGSGTLDGQGKYSWPLNDCHKNTNCPKLAM 152

[Close]
BLAST of CsGy7G002740 vs. Swiss-Prot
Match: sp|Q05967|PGLR_TOBAC (Polygalacturonase OS=Nicotiana tabacum OX=4097 GN=PG1 PE=2 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 6.3e-25
Identity = 61/134 (45.52%), Postives = 84/134 (62.69%), Query Frame = 0 

Query: 15  LLLMLASTAKGQS-IFDITTYGAKPNTDITQALANAWKDACASTYSSKLLIPMGVYHLNQ 74
           +LL LA   + Q+ +FDIT YGA  N DI++AL NA+K+AC ST  S ++IP G + +NQ
Sbjct: 12  VLLFLAHFGESQTGVFDITKYGANSNADISEALLNAFKEACQSTSPSTIVIPKGTFTMNQ 71

Query: 75  SILHGPCKSTIEVRMEGTLQAHPDP----IGDGLVLFQYIDQLTLSGTGAFDGQGEKGWE 134
             L GPCKS +E++++ TL+A  DP    +G+ L +   +DQ T+SG G  DGQ    WE
Sbjct: 72  VKLEGPCKSPLELQIQATLKAPSDPSQLKVGEWLTV-NKLDQFTMSGGGILDGQAAAAWE 131

Query: 135 KNDCHLKKICTKLP 144
              C   K C KLP
Sbjct: 132 ---CKQSKKCNKLP 141

[Close]
BLAST of CsGy7G002740 vs. Swiss-Prot
Match: sp|Q40312|PGLR_MEDSA (Polygalacturonase OS=Medicago sativa OX=3879 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 5.3e-24
Identity = 58/126 (46.03%), Postives = 81/126 (64.29%), Query Frame = 0 

Query: 10  TLLLHLLLMLASTAKGQS-IFDITTYGAKPNTDITQALANAWKDACASTYSSKLLIPMGV 69
           T ++   L +A     QS + DI+ +G KPN+DI QAL +AW +ACAST ++K++IP G 
Sbjct: 5   TAIIVSFLFIADFCAAQSGVLDISKFGGKPNSDIGQALTSAWNEACASTTAAKIVIPAGT 64

Query: 70  YHLNQSILHGPCKSTIEVRMEGTLQAHPDPI----GDGLVLFQYIDQLTLSGTGAFDGQG 129
           Y LN   L GPCK+ IE++++GT+QA  DP      +    F Y+D LTLSG G FDGQG
Sbjct: 65  YQLNGIELKGPCKAPIELQVDGTIQAPADPSVIKGTEQWFKFLYMDHLTLSGKGVFDGQG 124

Query: 130 EKGWEK 131
              ++K
Sbjct: 125 ATVYKK 130

[Close]
BLAST of CsGy7G002740 vs. Swiss-Prot
Match: sp|Q6H9K0|PGLR2_PLAAC (Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.5e-23
Identity = 55/122 (45.08%), Postives = 73/122 (59.84%), Query Frame = 0 

Query: 27  SIFDITTYGAKPNTDITQALANAWKDACASTYSSKLLIPMGVYHLNQSILHGPCK-STIE 86
           S+F++  YGAK   DI+QA+  AWK ACAS   S +LIP G Y++ +  + GPCK S I 
Sbjct: 8   SVFNVNDYGAKGAGDISQAVMKAWKAACASQGPSTVLIPKGNYNMGEVAMQGPCKGSKIG 67

Query: 87  VRMEGTLQAHPDPI---GDGLVLFQYIDQLTLSGTGAFDGQGEKGWEKNDCHLKKICTKL 145
            +++G ++A  DP     DG V F  ID LT+SGTG  DGQG+  W KN+C     C   
Sbjct: 68  FQIDGVVKAPADPSKFKSDGWVSFYRIDGLTVSGTGTLDGQGQTAWAKNNCDKNPNCKHA 127

[Close]
BLAST of CsGy7G002740 vs. Swiss-Prot
Match: sp|Q39786|PGLR_GOSHI (Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-21
Identity = 58/145 (40.00%), Postives = 87/145 (60.00%), Query Frame = 0 

Query: 7   NIMTLLLHLLLMLASTAKGQS-IFDITT-YGAKPN--TDITQALANAWKDACASTYSSKL 66
           NI+  +  LLL+  S +K QS  FD+   +GAK +  TD+++   +AWK+ACAS   S +
Sbjct: 6   NIVPSMFVLLLLFISASKVQSDAFDVVAKFGAKADGKTDLSKPFLDAWKEACASVTPSTV 65

Query: 67  LIPMGVYHLNQSILHGPCKSTIEVRMEGTLQAHPDPIG---DGLVLFQYIDQLTLSGTGA 126
           +IP G Y L++  L GPCK+ IE+ ++GT+QA  DP        V F  ++   + G G 
Sbjct: 66  VIPKGTYLLSKVNLEGPCKAPIEINVQGTIQAPADPSAFKDPNWVRFYSVENFKMFGGGI 125

Query: 127 FDGQGEKGWEKNDCHLKKICTKLPM 145
           FDGQG   +EKN C  ++  +KLP+
Sbjct: 126 FDGQGSIAYEKNTCENREFRSKLPV 150

[Close]
BLAST of CsGy7G002740 vs. Swiss-Prot
Match: sp|W8P8Q3|SALK6_KALTU (Probable galacturan 1,4-alpha-galacturonidase SALK6 OS=Kali turgidum OX=151250 PE=1 SV=3)

HSP 1 Score: 104.0 bits (258), Expect = 1.5e-21
Identity = 54/142 (38.03%), Postives = 77/142 (54.23%), Query Frame = 0 

Query: 9   MTLLLHLLLMLASTAKGQSIFDITTYGAKPNTDITQALANAWKDACASTYSSKLLIPMGV 68
           + LL+ L  +  S A+ Q   DIT +GAKPN D T AL  AWK+ACA+   +K+++P G 
Sbjct: 6   LPLLVALFYLFVSVARSQGPIDITKFGAKPNADATSALLAAWKEACAAAAPAKIVVPAGE 65

Query: 69  YHLNQSILHGPCKSTIEVRMEGTLQAHPDPI----GDGLVLFQYIDQLT---LSGTGAFD 128
           + LN   L GPCK+ + + + G  +A  D       D  V  + +  LT   L   G FD
Sbjct: 66  FLLNAVKLQGPCKAPLTIEIAGNFKAPADVAQMKGEDTWVKIENVQGLTITCLPTGGTFD 125

Query: 129 GQGEKGWEKNDCHLKKICTKLP 144
           GQG+  W++N C    +C  LP
Sbjct: 126 GQGQAAWKQNKCAQSGMCNSLP 147

[Close]
BLAST of CsGy7G002740 vs. TrEMBL
Match: tr|A0A1S3C129|A0A1S3C129_CUCME (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103495658 PE=3 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 5.5e-66
Identity = 126/143 (88.11%), Postives = 132/143 (92.31%), Query Frame = 0 

Query: 2   MGLRSNIMTLLLHLLLMLASTAKGQSIFDITTYGAKPNTDITQALANAWKDACASTYSSK 61
           MGLRSNIM LLLHLLLMLASTAK QSIFDITTYGAKPNTDITQ LANAWKDACAST  S+
Sbjct: 122 MGLRSNIMALLLHLLLMLASTAKCQSIFDITTYGAKPNTDITQVLANAWKDACASTNPSQ 181

Query: 62  LLIPMGVYHLNQSILHGPCKSTIEVRMEGTLQAHPDPIGDGLVLFQYIDQLTLSGTGAFD 121
           LLIP GVY LNQS+L GPC STIEVRMEGTLQAHPDPIG GLVLF++IDQLT+SGTGAFD
Sbjct: 182 LLIPTGVYQLNQSLLIGPCNSTIEVRMEGTLQAHPDPIGIGLVLFRHIDQLTISGTGAFD 241

Query: 122 GQGEKGWEKNDCHLKKICTKLPM 145
           GQGEKGWEKNDCHLKK CT+LPM
Sbjct: 242 GQGEKGWEKNDCHLKKACTRLPM 264

[Close]
BLAST of CsGy7G002740 vs. TrEMBL
Match: tr|A0A1S3CSM1|A0A1S3CSM1_CUCME (polygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103504474 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 7.9e-49
Identity = 106/147 (72.11%), Postives = 116/147 (78.91%), Query Frame = 0 

Query: 1   MMGLRSNIMTLLLHLLLMLASTAKGQSIFDITTYGAKPNTDITQALANAWKDACASTYSS 60
           MMGL      L   LLL LAST +GQSIFD+TTYGAKPNTDITQALANAW +ACAST  S
Sbjct: 1   MMGL----ALLPFLLLLSLASTIQGQSIFDVTTYGAKPNTDITQALANAWTEACASTTPS 60

Query: 61  KLLIPMGVYHLNQSILHGPCKST-IEVRMEGTLQAHPDPIGDGLVLFQYIDQLTLSGTGA 120
            LLIP GVY L+QS L GPCKS  I+V++EGTLQA     GDGLVLF YIDQL LSG+G 
Sbjct: 61  TLLIPKGVYQLSQSNLKGPCKSVPIQVQVEGTLQAPIHTKGDGLVLFSYIDQLILSGSGV 120

Query: 121 FDGQGEKGWEKNDCHLKKICTKLPMVN 147
           FDGQG+ GWEKN+CH KKICTKLPMVN
Sbjct: 121 FDGQGKSGWEKNNCHKKKICTKLPMVN 143

[Close]
BLAST of CsGy7G002740 vs. TrEMBL
Match: tr|A0A1S4E3K9|A0A1S4E3K9_CUCME (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103500563 PE=3 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 7.4e-47
Identity = 103/145 (71.03%), Postives = 113/145 (77.93%), Query Frame = 0 

Query: 1   MMGLRSNIMTLLLHLLLMLASTAKGQSIFDITTYGAKPNTDITQALANAWKDACASTYSS 60
           MMGL      L   LLL LAST +GQSIFD+TTYGAKPNTDITQALANAW +ACAST  S
Sbjct: 1   MMGL----ALLPFLLLLSLASTIQGQSIFDVTTYGAKPNTDITQALANAWTEACASTTPS 60

Query: 61  KLLIPMGVYHLNQSILHGPCKST-IEVRMEGTLQAHPDPIGDGLVLFQYIDQLTLSGTGA 120
            LLIP GVY L+QS L GPCKS  I+V++EGTLQA     GDGLVLF YIDQL LSG+G 
Sbjct: 61  TLLIPKGVYQLSQSNLKGPCKSVPIQVQVEGTLQAPIHTKGDGLVLFTYIDQLILSGSGV 120

Query: 121 FDGQGEKGWEKNDCHLKKICTKLPM 145
           FDGQG+ GWEKN+CH  KICTKLPM
Sbjct: 121 FDGQGKSGWEKNNCHKNKICTKLPM 141

[Close]
BLAST of CsGy7G002740 vs. TrEMBL
Match: tr|A0A1S3B3X5|A0A1S3B3X5_CUCME (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103485719 PE=3 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 4.8e-46
Identity = 93/146 (63.70%), Postives = 117/146 (80.14%), Query Frame = 0 

Query: 2   MGLRSNIMTLLLHLLLMLASTAKGQS---IFDITTYGAKPNTDITQALANAWKDACASTY 61
           MGLRSN + LLL L L+L S +K QS   +FD+T++GAKP+ DIT AL +AWK+ CAS  
Sbjct: 1   MGLRSNFVALLL-LFLLLVSNSKAQSSGAVFDVTSFGAKPDADITGALVSAWKEGCASIT 60

Query: 62  SSKLLIPMGVYHLNQSILHGPCKSTIEVRMEGTLQAHPDPIGDGLVLFQYIDQLTLSGTG 121
            SK+LIP G Y L+QS L GPCKS+IE+++EGTLQA  DP GDGL++ +Y+D+LT+SG G
Sbjct: 61  PSKVLIPKGSYGLSQSNLKGPCKSSIELQIEGTLQAPSDPKGDGLLILEYVDRLTVSGMG 120

Query: 122 AFDGQGEKGWEKNDCHLKKICTKLPM 145
             DGQG++GWEKNDCHLKKICTKLPM
Sbjct: 121 VLDGQGKEGWEKNDCHLKKICTKLPM 145

[Close]
BLAST of CsGy7G002740 vs. TrEMBL
Match: tr|A0A1S3BML3|A0A1S3BML3_CUCME (LOW QUALITY PROTEIN: exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103491497 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 8.2e-46
Identity = 96/146 (65.75%), Postives = 114/146 (78.08%), Query Frame = 0 

Query: 2   MGLRSNIMTLLLHLLLMLASTAKGQS---IFDITTYGAKPNTDITQALANAWKDACASTY 61
           MGL SN +  LL +LL+L S +K QS   +FDIT YGAKPN DIT ALA+AWK+ACAST 
Sbjct: 12  MGLISNFVA-LLPVLLLLVSNSKAQSAAGVFDITKYGAKPNADITAALASAWKEACASTT 71

Query: 62  SSKLLIPMGVYHLNQSILHGPCKSTIEVRMEGTLQAHPDPIGDGLVLFQYIDQLTLSGTG 121
            SK+LIP G Y L QS L GPCKS+IE+++EGT+QA  D  GDGL+L +Y+DQLT+SGTG
Sbjct: 72  PSKVLIPKGTYGLTQSNLKGPCKSSIELQLEGTVQASVDVKGDGLLLLEYVDQLTVSGTG 131

Query: 122 AFDGQGEKGWEKNDCHLKKICTKLPM 145
             DGQG+  W KNDCHLKKICTKLPM
Sbjct: 132 VVDGQGKTAWGKNDCHLKKICTKLPM 156

The following BLAST results are available for this feature:
BLAST of CsGy7G002740 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011658677.14.4e-7599.29PREDICTED: exopolygalacturonase-like [Cucumis sativus][more]
XP_008455507.28.3e-6688.11PREDICTED: exopolygalacturonase-like [Cucumis melo][more]
XP_011658673.14.0e-6081.82PREDICTED: exopolygalacturonase-like [Cucumis sativus][more]
XP_004140444.12.1e-5372.73PREDICTED: exopolygalacturonase-like [Cucumis sativus][more]
XP_011652893.11.1e-4969.59PREDICTED: exopolygalacturonase-like [Cucumis sativus][more]
BLAST of CsGy7G002740 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G78400.17.3e-2441.60Pectin lyase-like superfamily protein[more]
AT3G07820.11.2e-2137.93Pectin lyase-like superfamily protein[more]
AT2G15450.13.4e-2135.42Pectin lyase-like superfamily protein[more]
AT2G15460.14.4e-2136.23Pectin lyase-like superfamily protein[more]
AT1G43090.17.5e-2135.53Pectin lyase-like superfamily protein[more]
BLAST of CsGy7G002740 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q05967|PGLR_TOBAC6.3e-2545.52Polygalacturonase OS=Nicotiana tabacum OX=4097 GN=PG1 PE=2 SV=1[more]
sp|Q40312|PGLR_MEDSA5.3e-2446.03Polygalacturonase OS=Medicago sativa OX=3879 PE=2 SV=1[more]
sp|Q6H9K0|PGLR2_PLAAC4.5e-2345.08Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 S... [more]
sp|Q39786|PGLR_GOSHI1.1e-2140.00Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1[more]
sp|W8P8Q3|SALK6_KALTU1.5e-2138.03Probable galacturan 1,4-alpha-galacturonidase SALK6 OS=Kali turgidum OX=151250 P... [more]
BLAST of CsGy7G002740 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C129|A0A1S3C129_CUCME5.5e-6688.11exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103495658 PE=3 SV=1[more]
tr|A0A1S3CSM1|A0A1S3CSM1_CUCME7.9e-4972.11polygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103504474 PE=3 SV=1[more]
tr|A0A1S4E3K9|A0A1S4E3K9_CUCME7.4e-4771.03exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103500563 PE=3 SV=1[more]
tr|A0A1S3B3X5|A0A1S3B3X5_CUCME4.8e-4663.70exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103485719 PE=3 SV=1[more]
tr|A0A1S3BML3|A0A1S3BML3_CUCME8.2e-4665.75LOW QUALITY PROTEIN: exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR011050Pectin_lyase_fold/virulence
IPR000743Glyco_hydro_28
IPR012334Pectin_lyas_fold
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0071555 cell wall organization
cellular_component GO:0005576 extracellular region
molecular_function GO:0004650 polygalacturonase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy7G002740.1CsGy7G002740.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 16..144
e-value: 1.4E-20
score: 75.6
IPR000743Glycoside hydrolase, family 28PFAMPF00295Glyco_hydro_28coord: 54..144
e-value: 6.6E-12
score: 45.0
NoneNo IPR availablePANTHERPTHR31375FAMILY NOT NAMEDcoord: 7..144
NoneNo IPR availablePANTHERPTHR31375:SF37PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 7..144
IPR011050Pectin lyase fold/virulence factorSUPERFAMILYSSF51126Pectin lyase-likecoord: 13..135

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy7G002740Cucumber (Chinese Long) v3cgybcucB316
CsGy7G002740Cucumber (Chinese Long) v3cgybcucB348
CsGy7G002740Cucumber (Chinese Long) v3cgybcucB349
CsGy7G002740Watermelon (97103) v2cgybwmbB500
CsGy7G002740Watermelon (97103) v2cgybwmbB502
CsGy7G002740Wax gourdcgybwgoB640
CsGy7G002740Wax gourdcgybwgoB641
CsGy7G002740Wax gourdcgybwgoB650
CsGy7G002740Cucumber (Gy14) v2cgybcgybB072
CsGy7G002740Cucurbita maxima (Rimu)cgybcmaB899
CsGy7G002740Cucurbita maxima (Rimu)cgybcmaB944
CsGy7G002740Cucurbita moschata (Rifu)cgybcmoB877
CsGy7G002740Cucurbita moschata (Rifu)cgybcmoB927
CsGy7G002740Cucurbita pepo (Zucchini)cgybcpeB910
CsGy7G002740Cucurbita pepo (Zucchini)cgybcpeB919
CsGy7G002740Cucurbita pepo (Zucchini)cgybcpeB964
CsGy7G002740Cucumber (Chinese Long) v2cgybcuB296
CsGy7G002740Cucumber (Chinese Long) v2cgybcuB324
CsGy7G002740Cucumber (Chinese Long) v2cgybcuB328
CsGy7G002740Bottle gourd (USVL1VR-Ls)cgyblsiB455
CsGy7G002740Bottle gourd (USVL1VR-Ls)cgyblsiB462
CsGy7G002740Melon (DHL92) v3.5.1cgybmeB467
CsGy7G002740Melon (DHL92) v3.5.1cgybmeB468
CsGy7G002740Melon (DHL92) v3.6.1cgybmedB464
CsGy7G002740Melon (DHL92) v3.6.1cgybmedB465
CsGy7G002740Watermelon (Charleston Gray)cgybwcgB504
CsGy7G002740Watermelon (Charleston Gray)cgybwcgB506
CsGy7G002740Watermelon (97103) v1cgybwmB565
CsGy7G002740Watermelon (97103) v1cgybwmB566
CsGy7G002740Wild cucumber (PI 183967)cgybcpiB304
CsGy7G002740Wild cucumber (PI 183967)cgybcpiB332
CsGy7G002740Silver-seed gourdcarcgybB0217
CsGy7G002740Silver-seed gourdcarcgybB1049