CsGy7G002580 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy7G002580
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	callose synthase 5-like
Location	Chr7 : 2083717 .. 2084622 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCACAAAGAAGGCCATCTCCAATCCAACCATCTTCCGACCCCATCACCACCACCGCCCCCTCGTGGCCCGTCTGTTCAATCGGGCGCTGCCACAACCTTCTTCTTTTTCTTCCTCTTTTTCTTCTTCAGACTTCAATTCTTTCTCGGAAACCCCAATTTCTCATCCCCTTCATTTCTCAATCCTTCGATCTGTTTATTCTTGCTTCCAGCACTTGTTTTCCTCCAGGTATTGATCACCCTTCTCTTTACTCTCTCAATTACTTTCATATTTTCTTTTCAATTCATTCAAAACCTTCTTCACTCTTGGATTCTTTCTGTGTTGGCTTCATTTTCTTTTCTGGCTTCTATTTTTCTTGTTGGATGTTGAGATGGAGATGGGGTTTATTTTATTTGTTTTGTGATTGTAGCGATTTGATGCTTGGTTTTATGTAGATGAGTGCACATGAAATGTGCTAGTGATAGAGTGTTATGAATCTTTCAAAAATGTCCTGAATGTTCTGGTGGTTGGAGAAAATGAGAAAAGGTTCCAAGCTACCGTCCTACTTATTGAACCAAACATCATCAAATAATCATAGTTTTCCTTTCCTGCCCATAGAAAACTTGAAAAATCTTAACCTTTTGTTCTTTATCATTTGTAAAACCAAGAACCTACGTCAACTGTTTTCATGAATTCTTATTCCACTTTGAATTTTACAGGATTATTGGGACCATTATTAAAGAAGTTGAAAATAATATTGGAAAGAACACACTTCTTACAAACTTCAAAATGGATCCATTACTCATTTTGTGCAAGAAATTTGTGGAACTCGTGGAGATCTTGGTAAGTTGTGATGCAATTCTGAAGTATTTTGTTGGTGTGGAATAGTTTATCTTGCATGTACCTAACACAATGATTATGTTTGCTT

mRNA sequence

CCCACAAAGAAGGCCATCTCCAATCCAACCATCTTCCGACCCCATCACCACCACCGCCCCCTCGTGGCCCGTCTGTTCAATCGGGCGCTGCCACAACCTTCTTCTTTTTCTTCCTCTTTTTCTTCTTCAGACTTCAATTCTTTCTCGGAAACCCCAATTTCTCATCCCCTTCATTTCTCAATCCTTCGATCTGTTTATTCTTGCTTCCAGCACTTGTTTTCCTCCAGGATTATTGGGACCATTATTAAAGAAGTTGAAAATAATATTGGAAAGAACACACTTCTTACAAACTTCAAAATGGATCCATTACTCATTTTGTGCAAGAAATTTGTGGAACTCGTGGAGATCTTGGTAAGTTGTGATGCAATTCTGAAGTATTTTGTTGGTGTGGAATAGTTTATCTTGCATGTACCTAACACAATGATTATGTTTGCTT

Coding sequence (CDS)

CCCACAAAGAAGGCCATCTCCAATCCAACCATCTTCCGACCCCATCACCACCACCGCCCCCTCGTGGCCCGTCTGTTCAATCGGGCGCTGCCACAACCTTCTTCTTTTTCTTCCTCTTTTTCTTCTTCAGACTTCAATTCTTTCTCGGAAACCCCAATTTCTCATCCCCTTCATTTCTCAATCCTTCGATCTGTTTATTCTTGCTTCCAGCACTTGTTTTCCTCCAGGATTATTGGGACCATTATTAAAGAAGTTGAAAATAATATTGGAAAGAACACACTTCTTACAAACTTCAAAATGGATCCATTACTCATTTTGTGCAAGAAATTTGTGGAACTCGTGGAGATCTTGGTAAGTTGTGATGCAATTCTGAAGTATTTTGTTGGTGTGGAATAG

Protein sequence

PTKKAISNPTIFRPHHHHRPLVARLFNRALPQPSSFSSSFSSSDFNSFSETPISHPLHFSILRSVYSCFQHLFSSRIIGTIIKEVENNIGKNTLLTNFKMDPLLILCKKFVELVEILVSCDAILKYFVGVE

Homology

[Close]

BLAST of CsGy7G002580 vs. NCBI nr
Match: KGN62159.1 (hypothetical protein Csa_2G302250 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 3.6e-12
Identity = 42/46 (91.30%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 76  RIIGTIIKEVENNIGKNTLLTNFKMDPLLILCKKFVELVEILVSCD 122
           RIIGTIIKEVENNIGKNTLLTNFKM PLLILCKKFVELVEIL   D
Sbjct: 54  RIIGTIIKEVENNIGKNTLLTNFKMGPLLILCKKFVELVEILKDGD 99

[Close]

BLAST of CsGy7G002580 vs. NCBI nr
Match: XP_011649400.1 (PREDICTED: LOW QUALITY PROTEIN: callose synthase 5-like [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 3.6e-12
Identity = 42/46 (91.30%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 76  RIIGTIIKEVENNIGKNTLLTNFKMDPLLILCKKFVELVEILVSCD 122
           RIIGTIIKEVENNIGKNTLLTNFKM PLLILCKKFVELVEIL   D
Sbjct: 914 RIIGTIIKEVENNIGKNTLLTNFKMGPLLILCKKFVELVEILKDGD 959

[Close]

BLAST of CsGy7G002580 vs. NCBI nr
Match: XP_016902607.1 (PREDICTED: callose synthase 5-like [Cucumis melo])

HSP 1 Score: 79.3 bits (194), Expect = 1.1e-11
Identity = 41/46 (89.13%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 76  RIIGTIIKEVENNIGKNTLLTNFKMDPLLILCKKFVELVEILVSCD 122
           RIIGTIIKEVENNIGKNTLLTNFKM PLLILC+KFVELVEIL   D
Sbjct: 708 RIIGTIIKEVENNIGKNTLLTNFKMGPLLILCQKFVELVEILKDGD 753

[Close]

BLAST of CsGy7G002580 vs. NCBI nr
Match: XP_022150844.1 (callose synthase 5 [Momordica charantia])

HSP 1 Score: 77.0 bits (188), Expect = 5.2e-11
Identity = 40/46 (86.96%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 76  RIIGTIIKEVENNIGKNTLLTNFKMDPLLILCKKFVELVEILVSCD 122
           RIIGTIIKEVENNI KNTLLTNFKM PLLILC+KFVELVEIL   D
Sbjct: 908 RIIGTIIKEVENNISKNTLLTNFKMGPLLILCQKFVELVEILKDGD 953

[Close]

BLAST of CsGy7G002580 vs. NCBI nr
Match: XP_022947858.1 (callose synthase 5 [Cucurbita moschata])

HSP 1 Score: 73.9 bits (180), Expect = 4.4e-10
Identity = 39/46 (84.78%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 76  RIIGTIIKEVENNIGKNTLLTNFKMDPLLILCKKFVELVEILVSCD 122
           RIIGTIIKEVENNI KNTLLTNFKM  LLILC+KFVELVEIL   D
Sbjct: 908 RIIGTIIKEVENNISKNTLLTNFKMGALLILCQKFVELVEILKDGD 953

[Close]

BLAST of CsGy7G002580 vs. TAIR10
Match: AT2G13680.1 (callose synthase 5)

HSP 1 Score: 61.2 bits (147), Expect = 5.4e-10
Identity = 34/64 (53.12%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 66  YSCFQHLF--------SSRIIGTIIKEVENNIGKNTLLTNFKMDPLLILCKKFVELVEIL 122
           Y  F+H+           RIIG IIKEVE+NI KN+ L+NF+M PL  LC KFVELV IL
Sbjct: 893 YESFKHVLHTLVIGENEKRIIGIIIKEVESNISKNSFLSNFRMAPLPALCSKFVELVGIL 952

[Close]

BLAST of CsGy7G002580 vs. Swiss-Prot
Match: sp|Q3B724|CALS5_ARATH (Callose synthase 5 OS=Arabidopsis thaliana OX=3702 GN=CALS5 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 9.7e-09
Identity = 34/64 (53.12%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 66  YSCFQHLF--------SSRIIGTIIKEVENNIGKNTLLTNFKMDPLLILCKKFVELVEIL 122
           Y  F+H+           RIIG IIKEVE+NI KN+ L+NF+M PL  LC KFVELV IL
Sbjct: 893 YESFKHVLHTLVIGENEKRIIGIIIKEVESNISKNSFLSNFRMAPLPALCSKFVELVGIL 952

[Close]

BLAST of CsGy7G002580 vs. TrEMBL
Match: tr|A0A0A0LM93|A0A0A0LM93_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G302250 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.4e-12
Identity = 42/46 (91.30%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 76  RIIGTIIKEVENNIGKNTLLTNFKMDPLLILCKKFVELVEILVSCD 122
           RIIGTIIKEVENNIGKNTLLTNFKM PLLILCKKFVELVEIL   D
Sbjct: 54  RIIGTIIKEVENNIGKNTLLTNFKMGPLLILCKKFVELVEILKDGD 99

[Close]

BLAST of CsGy7G002580 vs. TrEMBL
Match: tr|A0A1S4E305|A0A1S4E305_CUCME (callose synthase 5-like OS=Cucumis melo OX=3656 GN=LOC103499639 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 7.0e-12
Identity = 41/46 (89.13%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 76  RIIGTIIKEVENNIGKNTLLTNFKMDPLLILCKKFVELVEILVSCD 122
           RIIGTIIKEVENNIGKNTLLTNFKM PLLILC+KFVELVEIL   D
Sbjct: 708 RIIGTIIKEVENNIGKNTLLTNFKMGPLLILCQKFVELVEILKDGD 753

[Close]

BLAST of CsGy7G002580 vs. TrEMBL
Match: tr|A0A1S3CDY0|A0A1S3CDY0_CUCME (callose synthase 5 OS=Cucumis melo OX=3656 GN=LOC103499636 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.4e-09
Identity = 37/46 (80.43%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 76  RIIGTIIKEVENNIGKNTLLTNFKMDPLLILCKKFVELVEILVSCD 122
           RII  IIKEVE+NI KNTLLTNFKM PLLILCKKFVEL+EIL   D
Sbjct: 908 RIIAAIIKEVEDNISKNTLLTNFKMSPLLILCKKFVELMEILKDGD 953

[Close]

BLAST of CsGy7G002580 vs. TrEMBL
Match: tr|A0A0A0LJS7|A0A0A0LJS7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G302170 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.9e-09
Identity = 37/46 (80.43%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 76  RIIGTIIKEVENNIGKNTLLTNFKMDPLLILCKKFVELVEILVSCD 122
           RII TIIKEVE+NI KNTLLT F+M PLLILCKKFVELVEIL   D
Sbjct: 81  RIIATIIKEVEDNISKNTLLTTFRMSPLLILCKKFVELVEILKDGD 126

[Close]

BLAST of CsGy7G002580 vs. TrEMBL
Match: tr|A0A166AM29|A0A166AM29_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_010255 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.1e-08
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 0


Query: 76  RIIGTIIKEVENNIGKNTLLTNFKMDPLLILCKKFVELVEILVSCDA 123
           RIIG IIKEVE+NI +NT LTNFKM PL  LC+KFV+LVEIL + D+
Sbjct: 917 RIIGNIIKEVESNISRNTFLTNFKMGPLPTLCQKFVKLVEILKAADS 963

The following BLAST results are available for this feature:

BLAST of CsGy7G002580 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62159.1	3.6e-12	91.30	hypothetical protein Csa_2G302250 [Cucumis sativus]	[more]
XP_011649400.1	3.6e-12	91.30	PREDICTED: LOW QUALITY PROTEIN: callose synthase 5-like [Cucumis sativus]	[more]
XP_016902607.1	1.1e-11	89.13	PREDICTED: callose synthase 5-like [Cucumis melo]	[more]
XP_022150844.1	5.2e-11	86.96	callose synthase 5 [Momordica charantia]	[more]
XP_022947858.1	4.4e-10	84.78	callose synthase 5 [Cucurbita moschata]	[more]

BLAST of CsGy7G002580 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G13680.1	5.4e-10	53.13	callose synthase 5	[more]

BLAST of CsGy7G002580 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q3B724\|CALS5_ARATH	9.7e-09	53.13	Callose synthase 5 OS=Arabidopsis thaliana OX=3702 GN=CALS5 PE=1 SV=1	[more]

BLAST of CsGy7G002580 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LM93\|A0A0A0LM93_CUCSA	2.4e-12	91.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G302250 PE=4 SV=1	[more]
tr\|A0A1S4E305\|A0A1S4E305_CUCME	7.0e-12	89.13	callose synthase 5-like OS=Cucumis melo OX=3656 GN=LOC103499639 PE=4 SV=1	[more]
tr\|A0A1S3CDY0\|A0A1S3CDY0_CUCME	1.4e-09	80.43	callose synthase 5 OS=Cucumis melo OX=3656 GN=LOC103499636 PE=4 SV=1	[more]
tr\|A0A0A0LJS7\|A0A0A0LJS7_CUCSA	1.9e-09	80.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G302170 PE=4 SV=1	[more]
tr\|A0A166AM29\|A0A166AM29_DAUCA	6.1e-08	70.21	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_010255 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006075	(1->3)-beta-D-glucan biosynthetic process
cellular_component	GO:0000148	1,3-beta-D-glucan synthase complex
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003843	1,3-beta-D-glucan synthase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G002580.1	CsGy7G002580.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12741	LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1	coord: 75..122
None	No IPR available	PANTHER	PTHR12741:SF29	CALLOSE SYNTHASE 5	coord: 75..122

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy7G002580	Wax gourd	cgybwgoB640
CsGy7G002580	Wax gourd	cgybwgoB641
CsGy7G002580	Wax gourd	cgybwgoB650
CsGy7G002580	Cucurbita maxima (Rimu)	cgybcmaB899
CsGy7G002580	Cucurbita maxima (Rimu)	cgybcmaB944
CsGy7G002580	Cucurbita maxima (Rimu)	cgybcmaB957
CsGy7G002580	Cucurbita moschata (Rifu)	cgybcmoB877
CsGy7G002580	Cucurbita moschata (Rifu)	cgybcmoB927
CsGy7G002580	Cucurbita pepo (Zucchini)	cgybcpeB910
CsGy7G002580	Cucurbita pepo (Zucchini)	cgybcpeB919
CsGy7G002580	Cucurbita pepo (Zucchini)	cgybcpeB964
CsGy7G002580	Cucumber (Chinese Long) v2	cgybcuB324
CsGy7G002580	Cucumber (Chinese Long) v2	cgybcuB328
CsGy7G002580	Bottle gourd (USVL1VR-Ls)	cgyblsiB455
CsGy7G002580	Bottle gourd (USVL1VR-Ls)	cgyblsiB462
CsGy7G002580	Melon (DHL92) v3.5.1	cgybmeB454
CsGy7G002580	Melon (DHL92) v3.5.1	cgybmeB467
CsGy7G002580	Melon (DHL92) v3.5.1	cgybmeB468
CsGy7G002580	Melon (DHL92) v3.6.1	cgybmedB464
CsGy7G002580	Melon (DHL92) v3.6.1	cgybmedB465
CsGy7G002580	Watermelon (Charleston Gray)	cgybwcgB504
CsGy7G002580	Watermelon (Charleston Gray)	cgybwcgB506
CsGy7G002580	Watermelon (97103) v1	cgybwmB565
CsGy7G002580	Watermelon (97103) v1	cgybwmB566
CsGy7G002580	Wild cucumber (PI 183967)	cgybcpiB332
CsGy7G002580	Silver-seed gourd	carcgybB0217
CsGy7G002580	Silver-seed gourd	carcgybB0361
CsGy7G002580	Silver-seed gourd	carcgybB1049
CsGy7G002580	Cucumber (Chinese Long) v3	cgybcucB348
CsGy7G002580	Cucumber (Chinese Long) v3	cgybcucB349
CsGy7G002580	Watermelon (97103) v2	cgybwmbB500
CsGy7G002580	Watermelon (97103) v2	cgybwmbB502