CsGy6G031360 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G031360
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	cysteine-rich repeat secretory protein 38-like
Location	Chr6 : 29154690 .. 29154926 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCGCCCCAATTGGAGTTTTAAACTGCTTTTCATTTTGTTAGAGACATTGTTATTGATAGTCACCACCACAGTTAGCCAACCACAGTTTTTCCATCACAATTGTTCCAACGTAGGCAACTACACCAACACCAGTCCATTCAAGAAAAATCTAGACACTGTTCTTGCATCCATCTCCACCAATTCCCAGGTCGACAAAGGTTTCTATGCCATCGAAGGAGAAGAACCAAACTGA

mRNA sequence

ATGGATCGCCCCAATTGGAGTTTTAAACTGCTTTTCATTTTGTTAGAGACATTGTTATTGATAGTCACCACCACAGTTAGCCAACCACAGTTTTTCCATCACAATTGTTCCAACGTAGGCAACTACACCAACACCAGTCCATTCAAGAAAAATCTAGACACTGTTCTTGCATCCATCTCCACCAATTCCCAGGTCGACAAAGGTTTCTATGCCATCGAAGGAGAAGAACCAAACTGA

Coding sequence (CDS)

ATGGATCGCCCCAATTGGAGTTTTAAACTGCTTTTCATTTTGTTAGAGACATTGTTATTGATAGTCACCACCACAGTTAGCCAACCACAGTTTTTCCATCACAATTGTTCCAACGTAGGCAACTACACCAACACCAGTCCATTCAAGAAAAATCTAGACACTGTTCTTGCATCCATCTCCACCAATTCCCAGGTCGACAAAGGTTTCTATGCCATCGAAGGAGAAGAACCAAACTGA

Protein sequence

MDRPNWSFKLLFILLETLLLIVTTTVSQPQFFHHNCSNVGNYTNTSPFKKNLDTVLASISTNSQVDKGFYAIEGEEPN

Homology

[Close]

BLAST of CsGy6G031360 vs. NCBI nr
Match: XP_008441128.1 (PREDICTED: cysteine-rich repeat secretory protein 38-like [Cucumis melo])

HSP 1 Score: 105.1 bits (261), Expect = 1.1e-19
Identity = 63/79 (79.75%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 1  MDRPNWSFKLLFILLXXXXXXXXXXXXXXXXXHHNCS-NVGNYTNTSPFKKNLDTVLASI 60
          M R NWS K+LFIL    XXXXXXXXX     HH CS N+GNYTNTSPFKKNLDTVLASI
Sbjct: 1  MGRSNWSLKMLFILSETLXXXXXXXXXQPQFFHHKCSNNIGNYTNTSPFKKNLDTVLASI 60

Query: 61 STNSQVDKGFYAIEGEEPN 79
          STNSQVDKGFYAIEGEEPN
Sbjct: 61 STNSQVDKGFYAIEGEEPN 79

[Close]

BLAST of CsGy6G031360 vs. NCBI nr
Match: XP_022977358.1 (putative receptor-like protein kinase At4g00960 isoform X2 [Cucurbita maxima])

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-06
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 0


Query: 34 HNCSNVGNYTNTSPFKKNLDTVLASISTNSQVDKGFY-AIEGEEPN 79
          H CS+  NYT  SPFK+NLD VLASIS+N+QVD GFY A  GE+P+
Sbjct: 13 HTCSDKANYTAGSPFKRNLDAVLASISSNTQVDYGFYNATSGEDPD 58

[Close]

BLAST of CsGy6G031360 vs. NCBI nr
Match: XP_022977356.1 (putative receptor-like protein kinase At4g00960 isoform X1 [Cucurbita maxima])

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-06
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 0


Query: 34 HNCSNVGNYTNTSPFKKNLDTVLASISTNSQVDKGFY-AIEGEEPN 79
          H CS+  NYT  SPFK+NLD VLASIS+N+QVD GFY A  GE+P+
Sbjct: 13 HTCSDKANYTAGSPFKRNLDAVLASISSNTQVDYGFYNATSGEDPD 58

[Close]

BLAST of CsGy6G031360 vs. NCBI nr
Match: KGN49150.1 (hypothetical protein Csa_6G516580 [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 3.0e-06
Identity = 33/52 (63.46%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 33 HHNCSNVGNYTNTSPFKKNLDTVLASISTNS-----QVDKGFY-AIEGEEPN 79
          +H CS  GNYTN SPF+KNLD VLASIS+NS     QVD GFY A  GE+P+
Sbjct: 35 YHICSKKGNYTNNSPFEKNLDHVLASISSNSITDTRQVDYGFYNATSGEDPD 86

[Close]

BLAST of CsGy6G031360 vs. NCBI nr
Match: XP_004134966.2 (PREDICTED: cysteine-rich receptor-like protein kinase 10 [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 3.0e-06
Identity = 33/52 (63.46%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 33 HHNCSNVGNYTNTSPFKKNLDTVLASISTNS-----QVDKGFY-AIEGEEPN 79
          +H CS  GNYTN SPF+KNLD VLASIS+NS     QVD GFY A  GE+P+
Sbjct: 35 YHICSKKGNYTNNSPFEKNLDHVLASISSNSITDTRQVDYGFYNATSGEDPD 86

[Close]

BLAST of CsGy6G031360 vs. TAIR10
Match: AT3G21990.1 (Domain of unknown function (DUF26))

HSP 1 Score: 42.7 bits (99), Expect = 1.2e-04
Identity = 23/48 (47.92%), Postives = 30/48 (62.50%), Query Frame = 0


Query: 33 HHNCSNV-GNYTNTSPFKKNLDTVLASISTNSQVDKGF-YAIEGEEPN 79
          HH CSN  G Y   S F+KNL+ VL++I++      GF Y  EGE+PN
Sbjct: 35 HHKCSNTQGKYKQGSAFEKNLNLVLSTITSIGNFRDGFRYTEEGEDPN 82

[Close]

BLAST of CsGy6G031360 vs. TAIR10
Match: AT4G20670.1 (Domain of unknown function (DUF26))

HSP 1 Score: 42.7 bits (99), Expect = 1.2e-04
Identity = 23/48 (47.92%), Postives = 30/48 (62.50%), Query Frame = 0


Query: 33 HHNCSNV-GNYTNTSPFKKNLDTVLASISTNSQVDKGF-YAIEGEEPN 79
          HH CSN  G Y   S F+KNL+ VL++I++      GF Y  EGE+PN
Sbjct: 49 HHKCSNTQGKYKQGSAFEKNLNLVLSTITSIGNFRDGFRYTEEGEDPN 96

[Close]

BLAST of CsGy6G031360 vs. TAIR10
Match: AT4G20650.1 (receptor-like protein kinase-related)

HSP 1 Score: 42.7 bits (99), Expect = 1.2e-04
Identity = 23/48 (47.92%), Postives = 30/48 (62.50%), Query Frame = 0


Query: 33 HHNCSNV-GNYTNTSPFKKNLDTVLASISTNSQVDKGF-YAIEGEEPN 79
          HH CSN  G Y   S F+KNL+ VL++I++      GF Y  EGE+PN
Sbjct: 35 HHKCSNTQGKYKQGSAFEKNLNLVLSTITSIGNFRDGFRYTEEGEDPN 82

[Close]

BLAST of CsGy6G031360 vs. TAIR10
Match: AT4G20640.1 (Protein with domains of unknown function (DUF26 and DUF1204))

HSP 1 Score: 42.7 bits (99), Expect = 1.2e-04
Identity = 23/48 (47.92%), Postives = 30/48 (62.50%), Query Frame = 0


Query: 33 HHNCSNV-GNYTNTSPFKKNLDTVLASISTNSQVDKGF-YAIEGEEPN 79
          HH CSN  G Y   S F+KNL+ VL++I++      GF Y  EGE+PN
Sbjct: 35 HHKCSNTQGKYKQGSAFEKNLNLVLSTITSIGNFRDGFRYTEEGEDPN 82

[Close]

BLAST of CsGy6G031360 vs. TAIR10
Match: AT4G20620.1 (Protein with domains of unknown function (DUF26 and DUF1204))

HSP 1 Score: 42.7 bits (99), Expect = 1.2e-04
Identity = 23/48 (47.92%), Postives = 30/48 (62.50%), Query Frame = 0


Query: 33 HHNCSNV-GNYTNTSPFKKNLDTVLASISTNSQVDKGF-YAIEGEEPN 79
          HH CSN  G Y   S F+KNL+ VL++I++      GF Y  EGE+PN
Sbjct: 35 HHKCSNTQGKYKQGSAFEKNLNLVLSTITSIGNFRDGFRYTEEGEDPN 82

[Close]

BLAST of CsGy6G031360 vs. TrEMBL
Match: tr|A0A1S3B2Q9|A0A1S3B2Q9_CUCME (cysteine-rich repeat secretory protein 38-like OS=Cucumis melo OX=3656 GN=LOC103485358 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 7.0e-20
Identity = 63/79 (79.75%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 1  MDRPNWSFKLLFILLXXXXXXXXXXXXXXXXXHHNCS-NVGNYTNTSPFKKNLDTVLASI 60
          M R NWS K+LFIL    XXXXXXXXX     HH CS N+GNYTNTSPFKKNLDTVLASI
Sbjct: 1  MGRSNWSLKMLFILSETLXXXXXXXXXQPQFFHHKCSNNIGNYTNTSPFKKNLDTVLASI 60

Query: 61 STNSQVDKGFYAIEGEEPN 79
          STNSQVDKGFYAIEGEEPN
Sbjct: 61 STNSQVDKGFYAIEGEEPN 79

[Close]

BLAST of CsGy6G031360 vs. TrEMBL
Match: tr|A0A0A0KHG1|A0A0A0KHG1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516580 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-06
Identity = 33/52 (63.46%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 33 HHNCSNVGNYTNTSPFKKNLDTVLASISTNS-----QVDKGFY-AIEGEEPN 79
          +H CS  GNYTN SPF+KNLD VLASIS+NS     QVD GFY A  GE+P+
Sbjct: 35 YHICSKKGNYTNNSPFEKNLDHVLASISSNSITDTRQVDYGFYNATSGEDPD 86

[Close]

BLAST of CsGy6G031360 vs. TrEMBL
Match: tr|A0A1S3AZK3|A0A1S3AZK3_CUCME (uncharacterized protein LOC103484586 OS=Cucumis melo OX=3656 GN=LOC103484586 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.4e-06
Identity = 32/52 (61.54%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 33  HHNCSNVGNYTNTSPFKKNLDTVLASISTNS-----QVDKGFY-AIEGEEPN 79
           +H CS  GNYTN SPF+KNLD VLASIS+NS      VD GFY A  GE+P+
Sbjct: 755 YHICSEKGNYTNNSPFEKNLDNVLASISSNSNTDTRHVDYGFYNATSGEDPD 806

[Close]

BLAST of CsGy6G031360 vs. TrEMBL
Match: tr|A0A0A0KL98|A0A0A0KL98_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516500 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.8e-05
Identity = 27/44 (61.36%), Postives = 32/44 (72.73%), Query Frame = 0


Query: 36 CSNVGNYTNTSPFKKNLDTVLASISTNSQVDKGFY-AIEGEEPN 79
          CS+ GNYT  SPFKKNLD VL S+S+N+  D GFY A  GE P+
Sbjct: 35 CSDKGNYTTNSPFKKNLDAVLFSLSSNNHFDSGFYNASSGENPD 78

[Close]

BLAST of CsGy6G031360 vs. TrEMBL
Match: tr|A0A0A0KHF3|A0A0A0KHF3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G515490 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 8.4e-05
Identity = 23/46 (50.00%), Postives = 36/46 (78.26%), Query Frame = 0


Query: 34 HNCSNVGNYTNTSPFKKNLDTVLASISTNSQVDKGFYAIE-GEEPN 79
          H+CSN GNYT  S +K+NLD +L+SI++N+++D GFY    G++P+
Sbjct: 30 HSCSNTGNYTTNSVYKQNLDNLLSSIASNTEIDYGFYNFSAGQDPD 75

The following BLAST results are available for this feature:

BLAST of CsGy6G031360 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441128.1	1.1e-19	79.75	PREDICTED: cysteine-rich repeat secretory protein 38-like [Cucumis melo]	[more]
XP_022977358.1	1.8e-06	65.22	putative receptor-like protein kinase At4g00960 isoform X2 [Cucurbita maxima]	[more]
XP_022977356.1	1.8e-06	65.22	putative receptor-like protein kinase At4g00960 isoform X1 [Cucurbita maxima]	[more]
KGN49150.1	3.0e-06	63.46	hypothetical protein Csa_6G516580 [Cucumis sativus]	[more]
XP_004134966.2	3.0e-06	63.46	PREDICTED: cysteine-rich receptor-like protein kinase 10 [Cucumis sativus]	[more]

BLAST of CsGy6G031360 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G21990.1	1.2e-04	47.92	Domain of unknown function (DUF26)	[more]
AT4G20670.1	1.2e-04	47.92	Domain of unknown function (DUF26)	[more]
AT4G20650.1	1.2e-04	47.92	receptor-like protein kinase-related	[more]
AT4G20640.1	1.2e-04	47.92	Protein with domains of unknown function (DUF26 and DUF1204)	[more]
AT4G20620.1	1.2e-04	47.92	Protein with domains of unknown function (DUF26 and DUF1204)	[more]

BLAST of CsGy6G031360 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy6G031360 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B2Q9\|A0A1S3B2Q9_CUCME	7.0e-20	79.75	cysteine-rich repeat secretory protein 38-like OS=Cucumis melo OX=3656 GN=LOC103...	[more]
tr\|A0A0A0KHG1\|A0A0A0KHG1_CUCSA	2.0e-06	63.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516580 PE=4 SV=1	[more]
tr\|A0A1S3AZK3\|A0A1S3AZK3_CUCME	4.4e-06	61.54	uncharacterized protein LOC103484586 OS=Cucumis melo OX=3656 GN=LOC103484586 PE=...	[more]
tr\|A0A0A0KL98\|A0A0A0KL98_CUCSA	3.8e-05	61.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516500 PE=4 SV=1	[more]
tr\|A0A0A0KHF3\|A0A0A0KHF3_CUCSA	8.4e-05	50.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G515490 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G031360.1	CsGy6G031360.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR32099	CYSTEINE-RICH REPEAT SECRETORY PROTEIN	coord: 9..72
None	No IPR available	PANTHER	PTHR32099:SF10	CYSTEINE-RICH REPEAT SECRETORY PROTEIN 1-RELATED	coord: 9..72

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G031360	MELO3C007911.2	Melon (DHL92) v3.6.1	cgybmedB440

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G031360	Cucumber (Gy14) v2	cgybcgybB060
CsGy6G031360	Cucumber (Gy14) v2	cgybcgybB061
CsGy6G031360	Cucurbita maxima (Rimu)	cgybcmaB721
CsGy6G031360	Cucurbita maxima (Rimu)	cgybcmaB807
CsGy6G031360	Cucurbita maxima (Rimu)	cgybcmaB846
CsGy6G031360	Cucurbita maxima (Rimu)	cgybcmaB831
CsGy6G031360	Cucurbita maxima (Rimu)	cgybcmaB861
CsGy6G031360	Cucurbita moschata (Rifu)	cgybcmoB703
CsGy6G031360	Cucurbita moschata (Rifu)	cgybcmoB787
CsGy6G031360	Cucurbita moschata (Rifu)	cgybcmoB811
CsGy6G031360	Cucurbita moschata (Rifu)	cgybcmoB827
CsGy6G031360	Cucurbita moschata (Rifu)	cgybcmoB843
CsGy6G031360	Cucurbita pepo (Zucchini)	cgybcpeB710
CsGy6G031360	Cucurbita pepo (Zucchini)	cgybcpeB716
CsGy6G031360	Cucurbita pepo (Zucchini)	cgybcpeB763
CsGy6G031360	Cucurbita pepo (Zucchini)	cgybcpeB810
CsGy6G031360	Cucumber (Chinese Long) v2	cgybcuB247
CsGy6G031360	Cucumber (Chinese Long) v2	cgybcuB281
CsGy6G031360	Bottle gourd (USVL1VR-Ls)	cgyblsiB398
CsGy6G031360	Bottle gourd (USVL1VR-Ls)	cgyblsiB450
CsGy6G031360	Melon (DHL92) v3.5.1	cgybmeB420
CsGy6G031360	Melon (DHL92) v3.5.1	cgybmeB444
CsGy6G031360	Melon (DHL92) v3.6.1	cgybmedB417
CsGy6G031360	Melon (DHL92) v3.6.1	cgybmedB421
CsGy6G031360	Watermelon (Charleston Gray)	cgybwcgB399
CsGy6G031360	Watermelon (Charleston Gray)	cgybwcgB471
CsGy6G031360	Watermelon (97103) v1	cgybwmB445
CsGy6G031360	Watermelon (97103) v1	cgybwmB468
CsGy6G031360	Wild cucumber (PI 183967)	cgybcpiB254
CsGy6G031360	Wild cucumber (PI 183967)	cgybcpiB287
CsGy6G031360	Silver-seed gourd	carcgybB0360
CsGy6G031360	Silver-seed gourd	carcgybB0418
CsGy6G031360	Silver-seed gourd	carcgybB0640
CsGy6G031360	Silver-seed gourd	carcgybB0969
CsGy6G031360	Cucumber (Chinese Long) v3	cgybcucB258
CsGy6G031360	Cucumber (Chinese Long) v3	cgybcucB270
CsGy6G031360	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G031360	Watermelon (97103) v2	cgybwmbB394
CsGy6G031360	Watermelon (97103) v2	cgybwmbB441
CsGy6G031360	Watermelon (97103) v2	cgybwmbB479
CsGy6G031360	Wax gourd	cgybwgoB598