CsGy6G030040 (gene) Cucumber (Gy14) v2

NameCsGy6G030040
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionprostatic spermine-binding protein isoform X1
LocationChr6 : 28415280 .. 28418540 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAACTGGTTGCTGAAAAAGTAAAAAGGAAAAAAAGAAAGGACCAAAGGGAAAAATAGAAGAGAAAAGTTTATCCGAACCCACACCTGTCCATCGAGGCTCATTGGGCAGCTTAAAACGCGGTCTTTTTTACAAGATTACGACGCTGCCCGATCTGCCCGATACCGGACTGGAAAATTACGGGCAGTCGGTCTCCAGTAATCGCACTCGCTTCTCTCACTTCCCCCTCTCACCTCTTTCCCTCTCAACCCCCCCCCCCCCCCCCTTCTCTGAGTGCCGCCGATAATTCTATATCTTCGTTTCTCTTTTGTCTTTTCGATCTCGATCCGACGGTCCACAATGAACCTCCCTTCTCCTCCTTCTTTTCTGTGGTTTTAGATCTCCATACCTCCAGATCTACCATCTCTCTGCTCTGATCTCTCTTCTCGGTATGCTTTTTCTCTTAATTCCTTTTTTTTCTTCCTTCTATCTGTTTCTGTTTTGTTTCCCCTATTTGAGCTTCATCTTTTCTTGTTTTCTGCTTTTTTTGCTTCACCTTCTTTGCTGTTCTTCACTTTACTAGTGTTTCGGGGTCGTTTCTGAACGACTTAACTGAATTTCTGTGCTGTGTGGAGTTTAATTTCTCGTATATCTACGCTTTTTGTAACTTTTGGGATGGATTTACCGTTGACTTTATGAACACTGGAATTTTTTGCTTCACTGAAAGTTTAGGTCCCTCTGCTTGTTAGAGGATGCGTCAGAAAACTTCTTATGCTCTTTTTAAAAAAGGTATTTGAATATGTCTTAGAATGAGTCTTTTTGGATTTATTGTCTGCGGTCAAACCTCAGGATAGGCGGTAGAAACTACCAAATCAACACGGTAGGGGAAGGGGCTGACTGAGAGACTGAGAGACTGAGAGAATTTCCGGTGGAGTTATGTTTTGTTATAATTTTTAGGTTTTCATTTTTTCATTTTTTAACGGCTGTTGAATTTTTGGAGACAGATCTGACGGCGACCACATCTCTCATCAGTGTTTTTTGATCCATTTGCAGGGAACAGTCGCCGCGCGAATGGAGATAGCAAATGCTTCATTAGGTGTCACGCTCGGTGATGGCTCACTGGCATGCGCCAGTAATTGCTTAGCTGCTTTACTAGCTTCGGCTCTGGTCAACACCCAGCGCCTGGCTCAGGCAAGGCCCCTCTCTGTCTCTAACCTTTTTAATTACCACCTTATCTGTAATTTCTGAGTTCTATCTGCCCAGTTAATGAATGTTTCTAGTTGATATGCTTTTCATATCGAGGAAAAATTATGTTTCAAATGGGTTTTTACTGGATGGTTTTTTGTGTGTTTTTTTATGGAAGTCCCCCGGCTTCGGCCAACCGTTTTGATGTTTGCCGATTTCGGCTGAGCCTTAGTCGATAAAGTAAGCTGTAGGATAGGTGAGAAAAATATCCAACAGATCCATTCACTGCCACTCCTTCCGTTTGGCTAACTGATTCCCATCGTACGGCTTCCATTAGATTATTTTGGTTGATCTTTTCAAACCCAAAAAACAAAAACTTTTTCTACAAATTAATAAAATAAAAAGTTGAAAACTTTTCATTTTTATTTTTTCAAGGAAATTACTGTAATCACGCGTCATGGGATTGATTCTTTTGGATTTATCTTTCTCCCTTTGTTTTTTTGCTATTGGGCCATCATTTTCTTGACCCCACTTGATGGGTTCGTTGAGGTTTGATGCTGAATTTACGGAAATGACCCTCAACCGACAACTTGAATGACACGCCATATCCCTCTTTTAATTCACTTCATTTCAGTGGTTGAAGATACTATTGATGATTGACACGGAATTTCATTTTATTTCCATTTAAGAATAAAATAAATAAAGCTATGCTCCAAAGTTTATTCGTTTCATGTGAAATATTTCACTAAACAATTGTTAAGATAGGGAGATGTCACCTTTTTCTTTTGTTGTTGGAATATTATGCTTTGGACTCGGTGTCGAATAATTCTTGGAGTACTTTGCGACTTTTTTGAGAATTGTTGGATTAGGAATCAATCTTAATACGTGGTTTCTAGTGCCCAAAAGATTATCTTTTCATCTTCCTGTATCTATTTCTAGCTTATGATAGTGCCCGCCCGATTGTGATTGGGAAGTTTATTCCCTTCCCACCATCCTCTGCCTTTCTGCTTCTTAATGGATGCCATTTATGACATTCAATTGAAGTAGCTGATTAAAATTAGTGGGTAATTTAAACGTTAAAGTGGGTTCTTTATCACTTTGGTTGGTGACCAGATCCCGACAAGAAAAGACATGGGGAAAAAATAAAATAAAAAGGGGAGGAGGTTAAAGTAAAAACAGAGATTGTCAAATTGGAGGACTGAGACGGGGGGGAATAAACAAATGTACGCCTGCCATACTATTCATTTCTGTTAATATGTCCCATCATATTCTGTTAAATATTTTAATATGTCCTTATCGTTACTAATCATCATGTTTTGAAATTGTAAAACAAAAGAAATTCTGAGGCATTACTATCAATTTGACTTTTTAAAAGGAAATTCAGGTGAACTGGTAGCGGCTACGTTGTTTTAGCATTAATGTTTTCATTAAAATCTATTGCCTACTATGTTGAGTTCAAGTGTATAAGGAACATAGAAATTGATAGTCCTTGTGTGGTTTCTCTGTCTGTTTTTCTTTGATTGCAACGACCATTTTTGAAGTGATGTTTTTGGTCGCTGACATGCTTAACCTTATGGACCATTGTACTCTTGGGAATTTTGTTGCAGGATTCTCTTGGTGCATTTCTGATCAATCCTGAAATGAAAGGAGATAGTTCCACCCTGTGCCCCTCGTCCACACCGCTCGATGCTGGAGGAGATGTTGATGATGACGATGAAGGTGATGGGGATGGCGACTTGAGTGAAGGTGAAGGTGAAGAGGATTTATCATCTGAAGATGGAGATGACTACACCAACAACCTCAACGATAATAACAAAAGTAATTCTAAGAAGAATCCAGAGGGTGGAGCTGGTGGGGCGGAAGAGAATGGAGAGGAAGAAGAAGAGTTTGACGGGGAGGAGGATCAAGACGATGATGGTGATGATGATGATGATAACGATGATGGCGATGAGGATGACGACGACGAAGATGGTGATGACGACGACGATGATGATGGTGGAGAGGATGAAGACGAAGTAGCAGATGACGAGGACGAAGAGGACGAGGACGAAGACGAGGAAGCACTCCAGCCTCCCAAGAAGAGGAAGAAGTAA

mRNA sequence

ATGGAAAAACTGGTTGCTGAAAAAATCTCCATACCTCCAGATCTACCATCTCTCTGCTCTGATCTCTCTTCTCGGTTTTCATTTTTTCATTTTTTAACGGCTGTTGAATTTTTGGAGACAGATCTGACGGCGACCACATCTCTCATCAGTGGAACAGTCGCCGCGCGAATGGAGATAGCAAATGCTTCATTAGGTGTCACGCTCGGTGATGGCTCACTGGCATGCGCCAGTAATTGCTTAGCTGCTTTACTAGCTTCGGCTCTGGAAATTACTGTAATCACGCGTCATGGGATTGATTCTTTTGGATTTATCTTTCTCCCTTTGTTTTTTTGCTATTGGGCCATCATTTTCTTGACCCCACTTGATGGGTTCGTTGAGGATTCTCTTGGTGCATTTCTGATCAATCCTGAAATGAAAGGAGATAGTTCCACCCTGTGCCCCTCGTCCACACCGCTCGATGCTGGAGGAGATGTTGATGATGACGATGAAGGTGATGGGGATGGCGACTTGAGTGAAGGTGAAGGTGAAGAGGATTTATCATCTGAAGATGGAGATGACTACACCAACAACCTCAACGATAATAACAAAAGTAATTCTAAGAAGAATCCAGAGGGTGGAGCTGGTGGGGCGGAAGAGAATGGAGAGGAAGAAGAAGAGTTTGACGGGGAGGAGGATCAAGACGATGATGGTGATGATGATGATGATAACGATGATGGCGATGAGGATGACGACGACGAAGATGGTGATGACGACGACGATGATGATGGTGGAGAGGATGAAGACGAAGTAGCAGATGACGAGGACGAAGAGGACGAGGACGAAGACGAGGAAGCACTCCAGCCTCCCAAGAAGAGGAAGAAGTAA

Coding sequence (CDS)

ATGGAAAAACTGGTTGCTGAAAAAATCTCCATACCTCCAGATCTACCATCTCTCTGCTCTGATCTCTCTTCTCGGTTTTCATTTTTTCATTTTTTAACGGCTGTTGAATTTTTGGAGACAGATCTGACGGCGACCACATCTCTCATCAGTGGAACAGTCGCCGCGCGAATGGAGATAGCAAATGCTTCATTAGGTGTCACGCTCGGTGATGGCTCACTGGCATGCGCCAGTAATTGCTTAGCTGCTTTACTAGCTTCGGCTCTGGAAATTACTGTAATCACGCGTCATGGGATTGATTCTTTTGGATTTATCTTTCTCCCTTTGTTTTTTTGCTATTGGGCCATCATTTTCTTGACCCCACTTGATGGGTTCGTTGAGGATTCTCTTGGTGCATTTCTGATCAATCCTGAAATGAAAGGAGATAGTTCCACCCTGTGCCCCTCGTCCACACCGCTCGATGCTGGAGGAGATGTTGATGATGACGATGAAGGTGATGGGGATGGCGACTTGAGTGAAGGTGAAGGTGAAGAGGATTTATCATCTGAAGATGGAGATGACTACACCAACAACCTCAACGATAATAACAAAAGTAATTCTAAGAAGAATCCAGAGGGTGGAGCTGGTGGGGCGGAAGAGAATGGAGAGGAAGAAGAAGAGTTTGACGGGGAGGAGGATCAAGACGATGATGGTGATGATGATGATGATAACGATGATGGCGATGAGGATGACGACGACGAAGATGGTGATGACGACGACGATGATGATGGTGGAGAGGATGAAGACGAAGTAGCAGATGACGAGGACGAAGAGGACGAGGACGAAGACGAGGAAGCACTCCAGCCTCCCAAGAAGAGGAAGAAGTAA

Protein sequence

MEKLVAEKISIPPDLPSLCSDLSSRFSFFHFLTAVEFLETDLTATTSLISGTVAARMEIANASLGVTLGDGSLACASNCLAALLASALEITVITRHGIDSFGFIFLPLFFCYWAIIFLTPLDGFVEDSLGAFLINPEMKGDSSTLCPSSTPLDAGGDVDDDDEGDGDGDLSEGEGEEDLSSEDGDDYTNNLNDNNKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDDNDDGDEDDDDEDGDDDDDDDGGEDEDEVADDEDEEDEDEDEEALQPPKKRKK
BLAST of CsGy6G030040 vs. NCBI nr
Match: KGN48784.1 (hypothetical protein Csa_6G501250 [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 2.6e-23
Identity = 72/111 (64.86%), Postives = 73/111 (65.77%), Query Frame = 0

Query: 48  LISGTVAARMEIANASLGVTLGDGSLACASNCLAALLASALEITVITRHGIDSFGFIFLP 107
           L  GTVAARMEIANASLGVTLGDGSLACASNCLAALLASAL  T                
Sbjct: 4   LKKGTVAARMEIANASLGVTLGDGSLACASNCLAALLASALVNT---------------- 63

Query: 108 LFFCYWAIIFLTPLDGFVEDSLGAFLINPEMKGDSSTLCPSSTPLDAGGDV 159
                             +DSLGAFLINPEMKGDSSTLCPSSTPLDAGGDV
Sbjct: 64  --------------QRLAQDSLGAFLINPEMKGDSSTLCPSSTPLDAGGDV 84

BLAST of CsGy6G030040 vs. NCBI nr
Match: XP_004143491.1 (PREDICTED: prostatic spermine-binding protein [Cucumis sativus] >XP_011657993.1 PREDICTED: prostatic spermine-binding protein [Cucumis sativus] >XP_011657994.1 PREDICTED: prostatic spermine-binding protein [Cucumis sativus] >XP_011657995.1 PREDICTED: prostatic spermine-binding protein [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 2.7e-20
Identity = 65/102 (63.73%), Postives = 66/102 (64.71%), Query Frame = 0

Query: 57  MEIANASLGVTLGDGSLACASNCLAALLASALEITVITRHGIDSFGFIFLPLFFCYWAII 116
           MEIANASLGVTLGDGSLACASNCLAALLASAL  T                         
Sbjct: 1   MEIANASLGVTLGDGSLACASNCLAALLASALVNT------------------------- 60

Query: 117 FLTPLDGFVEDSLGAFLINPEMKGDSSTLCPSSTPLDAGGDV 159
                    +DSLGAFLINPEMKGDSSTLCPSSTPLDAGGDV
Sbjct: 61  -----QRLAQDSLGAFLINPEMKGDSSTLCPSSTPLDAGGDV 72

BLAST of CsGy6G030040 vs. NCBI nr
Match: XP_008440651.1 (PREDICTED: prostatic spermine-binding protein isoform X1 [Cucumis melo] >XP_008440653.1 PREDICTED: prostatic spermine-binding protein isoform X1 [Cucumis melo] >XP_016899245.1 PREDICTED: prostatic spermine-binding protein isoform X1 [Cucumis melo] >XP_016899246.1 PREDICTED: prostatic spermine-binding protein isoform X1 [Cucumis melo] >XP_016899247.1 PREDICTED: prostatic spermine-binding protein isoform X1 [Cucumis melo])

HSP 1 Score: 97.8 bits (242), Expect = 6.3e-17
Identity = 60/101 (59.41%), Postives = 62/101 (61.39%), Query Frame = 0

Query: 57  MEIANASLGVTLGDGSLACASNCLAALLASALEITVITRHGIDSFGFIFLPLFFCYWAII 116
           MEIANASLGVTLGDGSLACASNCLAALLASAL  T +                       
Sbjct: 1   MEIANASLGVTLGDGSLACASNCLAALLASALVNTQL----------------------- 60

Query: 117 FLTPLDGFVEDSLGAFLINPEMKGDSSTLCPSSTPLDAGGD 158
                    +DSL AFLINPEMKGDS TLCPSS PLDAG D
Sbjct: 61  -------LAQDSLSAFLINPEMKGDSHTLCPSSAPLDAGED 71

BLAST of CsGy6G030040 vs. NCBI nr
Match: XP_016899248.1 (PREDICTED: prostatic spermine-binding protein isoform X2 [Cucumis melo])

HSP 1 Score: 92.0 bits (227), Expect = 3.4e-15
Identity = 58/101 (57.43%), Postives = 60/101 (59.41%), Query Frame = 0

Query: 57  MEIANASLGVTLGDGSLACASNCLAALLASALEITVITRHGIDSFGFIFLPLFFCYWAII 116
           MEIANASLGVTLGDGSLACASNCLAALLASAL  T +                       
Sbjct: 1   MEIANASLGVTLGDGSLACASNCLAALLASALVNTQLL---------------------- 60

Query: 117 FLTPLDGFVEDSLGAFLINPEMKGDSSTLCPSSTPLDAGGD 158
                      + GAFLINPEMKGDS TLCPSS PLDAG D
Sbjct: 61  -----------AQGAFLINPEMKGDSHTLCPSSAPLDAGED 68

BLAST of CsGy6G030040 vs. NCBI nr
Match: XP_022132620.1 (phosphopantothenoylcysteine decarboxylase subunit VHS3 [Momordica charantia] >XP_022132621.1 phosphopantothenoylcysteine decarboxylase subunit VHS3 [Momordica charantia])

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-07
Identity = 46/97 (47.42%), Postives = 51/97 (52.58%), Query Frame = 0

Query: 57  MEIANASLGVTLGDGSLACASNCLAALLASALEITVITRHGIDSFGFIFLPLFFCYWAII 116
           ME+ NAS GVTLGDGSLA AS  LAALLASAL  + +                       
Sbjct: 1   MEVTNASAGVTLGDGSLARASKGLAALLASALVNSQL----------------------- 60

Query: 117 FLTPLDGFVEDSLGAFLINPEMKGDSSTLCPSSTPLD 154
                    ++ LG FLI P MKGDS T CPSSTPLD
Sbjct: 61  -------LAQNPLGIFLIRPGMKGDSPTQCPSSTPLD 67

BLAST of CsGy6G030040 vs. TrEMBL
Match: tr|A0A0A0KIZ3|A0A0A0KIZ3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G501250 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.7e-23
Identity = 72/111 (64.86%), Postives = 73/111 (65.77%), Query Frame = 0

Query: 48  LISGTVAARMEIANASLGVTLGDGSLACASNCLAALLASALEITVITRHGIDSFGFIFLP 107
           L  GTVAARMEIANASLGVTLGDGSLACASNCLAALLASAL  T                
Sbjct: 4   LKKGTVAARMEIANASLGVTLGDGSLACASNCLAALLASALVNT---------------- 63

Query: 108 LFFCYWAIIFLTPLDGFVEDSLGAFLINPEMKGDSSTLCPSSTPLDAGGDV 159
                             +DSLGAFLINPEMKGDSSTLCPSSTPLDAGGDV
Sbjct: 64  --------------QRLAQDSLGAFLINPEMKGDSSTLCPSSTPLDAGGDV 84

BLAST of CsGy6G030040 vs. TrEMBL
Match: tr|A0A1S3B1L0|A0A1S3B1L0_CUCME (prostatic spermine-binding protein isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485005 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 4.1e-17
Identity = 60/101 (59.41%), Postives = 62/101 (61.39%), Query Frame = 0

Query: 57  MEIANASLGVTLGDGSLACASNCLAALLASALEITVITRHGIDSFGFIFLPLFFCYWAII 116
           MEIANASLGVTLGDGSLACASNCLAALLASAL  T +                       
Sbjct: 1   MEIANASLGVTLGDGSLACASNCLAALLASALVNTQL----------------------- 60

Query: 117 FLTPLDGFVEDSLGAFLINPEMKGDSSTLCPSSTPLDAGGD 158
                    +DSL AFLINPEMKGDS TLCPSS PLDAG D
Sbjct: 61  -------LAQDSLSAFLINPEMKGDSHTLCPSSAPLDAGED 71

BLAST of CsGy6G030040 vs. TrEMBL
Match: tr|A0A1S4DTG6|A0A1S4DTG6_CUCME (prostatic spermine-binding protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485005 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 2.3e-15
Identity = 58/101 (57.43%), Postives = 60/101 (59.41%), Query Frame = 0

Query: 57  MEIANASLGVTLGDGSLACASNCLAALLASALEITVITRHGIDSFGFIFLPLFFCYWAII 116
           MEIANASLGVTLGDGSLACASNCLAALLASAL  T +                       
Sbjct: 1   MEIANASLGVTLGDGSLACASNCLAALLASALVNTQLL---------------------- 60

Query: 117 FLTPLDGFVEDSLGAFLINPEMKGDSSTLCPSSTPLDAGGD 158
                      + GAFLINPEMKGDS TLCPSS PLDAG D
Sbjct: 61  -----------AQGAFLINPEMKGDSHTLCPSSAPLDAGED 68

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN48784.12.6e-2364.86hypothetical protein Csa_6G501250 [Cucumis sativus][more]
XP_004143491.12.7e-2063.73PREDICTED: prostatic spermine-binding protein [Cucumis sativus] >XP_011657993.1 ... [more]
XP_008440651.16.3e-1759.41PREDICTED: prostatic spermine-binding protein isoform X1 [Cucumis melo] >XP_0084... [more]
XP_016899248.13.4e-1557.43PREDICTED: prostatic spermine-binding protein isoform X2 [Cucumis melo][more]
XP_022132620.11.2e-0747.42phosphopantothenoylcysteine decarboxylase subunit VHS3 [Momordica charantia] >XP... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0KIZ3|A0A0A0KIZ3_CUCSA1.7e-2364.86Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G501250 PE=4 SV=1[more]
tr|A0A1S3B1L0|A0A1S3B1L0_CUCME4.1e-1759.41prostatic spermine-binding protein isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034... [more]
tr|A0A1S4DTG6|A0A1S4DTG6_CUCME2.3e-1557.43prostatic spermine-binding protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G030040.1CsGy6G030040.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 185..202
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 140..287
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 210..277
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 155..184

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy6G030040CsaV3_6G045780Cucumber (Chinese Long) v3cgybcucB298
The following gene(s) are paralogous to this gene:

None