CsGy6G028750 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G028750
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	transcription factor RAX2
Location	Chr6 : 27537732 .. 27538151 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGGAAAGTTTTATTATTCTGATCATCATCATCCTCCATCATTTCAATTCAACAGTCCAATGGAGAATCAAAATCCATTACTGTTTCAAAGTTCAAATTTTGGTGAGTTGAACATGGAATTTGGAGCGAGTAATGATGGAATATTCCATGGATCAGTTGATCAAAACAGTAGTGGTGGTGGTGAATTTGGAGATCCAATAATGTTGGAGAATTTTGAGAATGGGTTAGTGGAGGATTTTAATAATTATGGGATGATGCCAAGCAGTAGTACTTCTGGAGAAAGCAGTTATAGTTTGGGTGAAATCAGCTCTTTGGGTTTTAATTATTCAGATTTTGAAGCTTCCCAACATCAACATCATCATCATGTTATTGCTCCTGCTTTTGCTCATCAATCTACACATTATTCCCTTCAATGA

mRNA sequence

ATGGGTGGAAAGTTTTATTATTCTGATCATCATCATCCTCCATCATTTCAATTCAACAGTCCAATGGAGAATCAAAATCCATTACTGTTTCAAAGTTCAAATTTTGGTGAGTTGAACATGGAATTTGGAGCGAGTAATGATGGAATATTCCATGGATCAGTTGATCAAAACAGTAGTGGTGGTGGTGAATTTGGAGATCCAATAATGTTGGAGAATTTTGAGAATGGGTTAGTGGAGGATTTTAATAATTATGGGATGATGCCAAGCAGTAGTACTTCTGGAGAAAGCAGTTATAGTTTGGGTGAAATCAGCTCTTTGGGTTTTAATTATTCAGATTTTGAAGCTTCCCAACATCAACATCATCATCATGTTATTGCTCCTGCTTTTGCTCATCAATCTACACATTATTCCCTTCAATGA

Coding sequence (CDS)

ATGGGTGGAAAGTTTTATTATTCTGATCATCATCATCCTCCATCATTTCAATTCAACAGTCCAATGGAGAATCAAAATCCATTACTGTTTCAAAGTTCAAATTTTGGTGAGTTGAACATGGAATTTGGAGCGAGTAATGATGGAATATTCCATGGATCAGTTGATCAAAACAGTAGTGGTGGTGGTGAATTTGGAGATCCAATAATGTTGGAGAATTTTGAGAATGGGTTAGTGGAGGATTTTAATAATTATGGGATGATGCCAAGCAGTAGTACTTCTGGAGAAAGCAGTTATAGTTTGGGTGAAATCAGCTCTTTGGGTTTTAATTATTCAGATTTTGAAGCTTCCCAACATCAACATCATCATCATGTTATTGCTCCTGCTTTTGCTCATCAATCTACACATTATTCCCTTCAATGA

Protein sequence

MGGKFYYSDHHHPPSFQFNSPMENQNPLLFQSSNFGELNMEFGASNDGIFHGSVDQNSSGGGEFGDPIMLENFENGLVEDFNNYGMMPSSSTSGESSYSLGEISSLGFNYSDFEASQHQHHHHVIAPAFAHQSTHYSLQ

Homology

[Close]

BLAST of CsGy6G028750 vs. NCBI nr
Match: KGN48643.1 (hypothetical protein Csa_6G496950 [Cucumis sativus] >ALN97494.1 hypothetical protein [Cucumis sativus] >ALN97498.1 hypothetical protein [Cucumis sativus] >ALN97502.1 hypothetical protein [Cucumis sativus] >ALN97506.1 hypothetical protein [Cucumis sativus] >ALN97510.1 hypothetical protein [Cucumis sativus])

HSP 1 Score: 272.7 bits (696), Expect = 6.9e-70
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MGGKFYYSDHHHPPSFQFNSPMENQNPLLFQSSNFGELNMEFGASNDGIFHGSVDQNSSG 60
           MGGKFYYSDHHHPPSFQFNSPMENQNPLLFQSSNFGELNMEFGASNDGIFHGSVDQNSSG
Sbjct: 1   MGGKFYYSDHHHPPSFQFNSPMENQNPLLFQSSNFGELNMEFGASNDGIFHGSVDQNSSG 60

Query: 61  GGEFGDPIMLENFENGLVEDFNNYGMMPSSSTSGESSYSLGEISSLGFNYSDFEASQHQX 120
           GGEFGDPIMLENFENGLVEDFNNYGMMPSSSTSGESSYSLGEISSLGFNYSDFEASQHQX
Sbjct: 61  GGEFGDPIMLENFENGLVEDFNNYGMMPSSSTSGESSYSLGEISSLGFNYSDFEASQHQX 120

Query: 121 XXXVIAPAFAHQSTHYSLQ 140
           XXXVIAPAFAHQSTHYSLQ
Sbjct: 121 XXXVIAPAFAHQSTHYSLQ 139

[Close]

BLAST of CsGy6G028750 vs. NCBI nr
Match: XP_011657912.1 (PREDICTED: transcription factor RAX2-like [Cucumis sativus])

HSP 1 Score: 272.7 bits (696), Expect = 6.9e-70
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MGGKFYYSDHHHPPSFQFNSPMENQNPLLFQSSNFGELNMEFGASNDGIFHGSVDQNSSG 60
           MGGKFYYSDHHHPPSFQFNSPMENQNPLLFQSSNFGELNMEFGASNDGIFHGSVDQNSSG
Sbjct: 181 MGGKFYYSDHHHPPSFQFNSPMENQNPLLFQSSNFGELNMEFGASNDGIFHGSVDQNSSG 240

Query: 61  GGEFGDPIMLENFENGLVEDFNNYGMMPSSSTSGESSYSLGEISSLGFNYSDFEASQHQX 120
           GGEFGDPIMLENFENGLVEDFNNYGMMPSSSTSGESSYSLGEISSLGFNYSDFEASQHQX
Sbjct: 241 GGEFGDPIMLENFENGLVEDFNNYGMMPSSSTSGESSYSLGEISSLGFNYSDFEASQHQX 300

Query: 121 XXXVIAPAFAHQSTHYSLQ 140
           XXXVIAPAFAHQSTHYSLQ
Sbjct: 301 XXXVIAPAFAHQSTHYSLQ 319

[Close]

BLAST of CsGy6G028750 vs. NCBI nr
Match: ALN97514.1 (hypothetical protein [Cucumis sativus])

HSP 1 Score: 267.3 bits (682), Expect = 2.9e-68
Identity = 132/139 (94.96%), Postives = 133/139 (95.68%), Query Frame = 0


Query: 1   MGGKFYYSDHHHPPSFQFNSPMENQNPLLFQSSNFGELNMEFGASNDGIFHGSVDQNSSG 60
           MGGKFYYSDHHHPPSFQFNSPMENQNPL+FQSSNFGELNMEFGASNDGIFHGSVDQNSSG
Sbjct: 1   MGGKFYYSDHHHPPSFQFNSPMENQNPLVFQSSNFGELNMEFGASNDGIFHGSVDQNSSG 60

Query: 61  GGEFGDPIMLENFENGLVEDFNNYGMMPSSSTSGESSYSLGEISSLGFNYSDFEASQHQX 120
           GGEFGDPIMLENFENGLVEDFNNYGMMPSSSTSGESSYSLGEISSLGFNYSDFEASQH  
Sbjct: 61  GGEFGDPIMLENFENGLVEDFNNYGMMPSSSTSGESSYSLGEISSLGFNYSDFEASQHXH 120

Query: 121 XXXVIAPAFAHQSTHYSLQ 140
               IAPAFAHQSTHYSLQ
Sbjct: 121 HHHXIAPAFAHQSTHYSLQ 139

[Close]

BLAST of CsGy6G028750 vs. NCBI nr
Match: XP_008440439.1 (PREDICTED: transcription factor RAX2 [Cucumis melo])

HSP 1 Score: 258.1 bits (658), Expect = 1.8e-65
Identity = 133/141 (94.33%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 1   MGGKFYYSDHHHPPSFQFNSPMENQNPLLFQSSNFGELNMEFGASNDGIFHGSVDQNSSG 60
           MGGKFYYSDHHHPPSFQFN+PMENQNPL+FQSSNFGELNMEFG SNDGIFHGSVDQNSSG
Sbjct: 181 MGGKFYYSDHHHPPSFQFNNPMENQNPLVFQSSNFGELNMEFGVSNDGIFHGSVDQNSSG 240

Query: 61  GGEFGDPIMLENFENGLVEDFNNYGMMPSSSTSGESSYSLGEISSLGFNYSDFEASQH-- 120
           GGEFGDPIMLENFENGLVEDFNNYGMMPSSSTSGESSYSLGEISSLGFNYSDFEASQH  
Sbjct: 241 GGEFGDPIMLENFENGLVEDFNNYGMMPSSSTSGESSYSLGEISSLGFNYSDFEASQHXX 300

Query: 121 QXXXXVIAPAFAHQSTHYSLQ 140
            XXXXVIAPAFAH S+HYSLQ
Sbjct: 301 XXXXXVIAPAFAHHSSHYSLQ 321

[Close]

BLAST of CsGy6G028750 vs. NCBI nr
Match: ALN97518.1 (hypothetical protein [Cucumis sativus])

HSP 1 Score: 254.2 bits (648), Expect = 2.5e-64
Identity = 133/142 (93.66%), Postives = 134/142 (94.37%), Query Frame = 0


Query: 1   MGGKFYYSDHHHPPSFQFNSPMENQNPLLFQSSNFGELNMEFGASNDGIFHGSVDQNSSG 60
           MGGKFYYSDHHHPPSFQFNSPMENQNPL+FQSSNFGELNMEFGASNDGIFHGSVDQNSSG
Sbjct: 1   MGGKFYYSDHHHPPSFQFNSPMENQNPLVFQSSNFGELNMEFGASNDGIFHGSVDQNSSG 60

Query: 61  GGEFGDPIMLENFENGLVEDFNNYGMMPSSSTSGESSYSLGEISSLGFNYSDFEAS---Q 120
           GGEFGDPIMLENFENGLVEDFNNYGMMPSSSTSGESSYSLGEISSLGFNYSDFEAS    
Sbjct: 61  GGEFGDPIMLENFENGLVEDFNNYGMMPSSSTSGESSYSLGEISSLGFNYSDFEASXXXX 120

Query: 121 HQXXXXVIAPAFAHQSTHYSLQ 140
             XXXX  APAFAHQSTHYSLQ
Sbjct: 121 XXXXXXXXAPAFAHQSTHYSLQ 142

[Close]

BLAST of CsGy6G028750 vs. TrEMBL
Match: tr|A0A0A0KGJ7|A0A0A0KGJ7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G496950 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 4.5e-70
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MGGKFYYSDHHHPPSFQFNSPMENQNPLLFQSSNFGELNMEFGASNDGIFHGSVDQNSSG 60
           MGGKFYYSDHHHPPSFQFNSPMENQNPLLFQSSNFGELNMEFGASNDGIFHGSVDQNSSG
Sbjct: 1   MGGKFYYSDHHHPPSFQFNSPMENQNPLLFQSSNFGELNMEFGASNDGIFHGSVDQNSSG 60

Query: 61  GGEFGDPIMLENFENGLVEDFNNYGMMPSSSTSGESSYSLGEISSLGFNYSDFEASQHQX 120
           GGEFGDPIMLENFENGLVEDFNNYGMMPSSSTSGESSYSLGEISSLGFNYSDFEASQHQX
Sbjct: 61  GGEFGDPIMLENFENGLVEDFNNYGMMPSSSTSGESSYSLGEISSLGFNYSDFEASQHQX 120

Query: 121 XXXVIAPAFAHQSTHYSLQ 140
           XXXVIAPAFAHQSTHYSLQ
Sbjct: 121 XXXVIAPAFAHQSTHYSLQ 139

[Close]

BLAST of CsGy6G028750 vs. TrEMBL
Match: tr|A0A0S2GLS0|A0A0S2GLS0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.9e-68
Identity = 132/139 (94.96%), Postives = 133/139 (95.68%), Query Frame = 0


Query: 1   MGGKFYYSDHHHPPSFQFNSPMENQNPLLFQSSNFGELNMEFGASNDGIFHGSVDQNSSG 60
           MGGKFYYSDHHHPPSFQFNSPMENQNPL+FQSSNFGELNMEFGASNDGIFHGSVDQNSSG
Sbjct: 1   MGGKFYYSDHHHPPSFQFNSPMENQNPLVFQSSNFGELNMEFGASNDGIFHGSVDQNSSG 60

Query: 61  GGEFGDPIMLENFENGLVEDFNNYGMMPSSSTSGESSYSLGEISSLGFNYSDFEASQHQX 120
           GGEFGDPIMLENFENGLVEDFNNYGMMPSSSTSGESSYSLGEISSLGFNYSDFEASQH  
Sbjct: 61  GGEFGDPIMLENFENGLVEDFNNYGMMPSSSTSGESSYSLGEISSLGFNYSDFEASQHXH 120

Query: 121 XXXVIAPAFAHQSTHYSLQ 140
               IAPAFAHQSTHYSLQ
Sbjct: 121 HHHXIAPAFAHQSTHYSLQ 139

[Close]

BLAST of CsGy6G028750 vs. TrEMBL
Match: tr|A0A1S3B0P9|A0A1S3B0P9_CUCME (transcription factor RAX2 OS=Cucumis melo OX=3656 GN=LOC103484882 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 1.2e-65
Identity = 133/141 (94.33%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 1   MGGKFYYSDHHHPPSFQFNSPMENQNPLLFQSSNFGELNMEFGASNDGIFHGSVDQNSSG 60
           MGGKFYYSDHHHPPSFQFN+PMENQNPL+FQSSNFGELNMEFG SNDGIFHGSVDQNSSG
Sbjct: 181 MGGKFYYSDHHHPPSFQFNNPMENQNPLVFQSSNFGELNMEFGVSNDGIFHGSVDQNSSG 240

Query: 61  GGEFGDPIMLENFENGLVEDFNNYGMMPSSSTSGESSYSLGEISSLGFNYSDFEASQH-- 120
           GGEFGDPIMLENFENGLVEDFNNYGMMPSSSTSGESSYSLGEISSLGFNYSDFEASQH  
Sbjct: 241 GGEFGDPIMLENFENGLVEDFNNYGMMPSSSTSGESSYSLGEISSLGFNYSDFEASQHXX 300

Query: 121 QXXXXVIAPAFAHQSTHYSLQ 140
            XXXXVIAPAFAH S+HYSLQ
Sbjct: 301 XXXXXVIAPAFAHHSSHYSLQ 321

[Close]

BLAST of CsGy6G028750 vs. TrEMBL
Match: tr|A0A0S2GLP3|A0A0S2GLP3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 1.7e-64
Identity = 133/142 (93.66%), Postives = 134/142 (94.37%), Query Frame = 0


Query: 1   MGGKFYYSDHHHPPSFQFNSPMENQNPLLFQSSNFGELNMEFGASNDGIFHGSVDQNSSG 60
           MGGKFYYSDHHHPPSFQFNSPMENQNPL+FQSSNFGELNMEFGASNDGIFHGSVDQNSSG
Sbjct: 1   MGGKFYYSDHHHPPSFQFNSPMENQNPLVFQSSNFGELNMEFGASNDGIFHGSVDQNSSG 60

Query: 61  GGEFGDPIMLENFENGLVEDFNNYGMMPSSSTSGESSYSLGEISSLGFNYSDFEAS---Q 120
           GGEFGDPIMLENFENGLVEDFNNYGMMPSSSTSGESSYSLGEISSLGFNYSDFEAS    
Sbjct: 61  GGEFGDPIMLENFENGLVEDFNNYGMMPSSSTSGESSYSLGEISSLGFNYSDFEASXXXX 120

Query: 121 HQXXXXVIAPAFAHQSTHYSLQ 140
             XXXX  APAFAHQSTHYSLQ
Sbjct: 121 XXXXXXXXAPAFAHQSTHYSLQ 142

The following BLAST results are available for this feature:

BLAST of CsGy6G028750 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48643.1	6.9e-70	100.00	hypothetical protein Csa_6G496950 [Cucumis sativus] >ALN97494.1 hypothetical pro...	[more]
XP_011657912.1	6.9e-70	100.00	PREDICTED: transcription factor RAX2-like [Cucumis sativus]	[more]
ALN97514.1	2.9e-68	94.96	hypothetical protein [Cucumis sativus]	[more]
XP_008440439.1	1.8e-65	94.33	PREDICTED: transcription factor RAX2 [Cucumis melo]	[more]
ALN97518.1	2.5e-64	93.66	hypothetical protein [Cucumis sativus]	[more]

BLAST of CsGy6G028750 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy6G028750 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy6G028750 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KGJ7\|A0A0A0KGJ7_CUCSA	4.5e-70	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G496950 PE=4 SV=1	[more]
tr\|A0A0S2GLS0\|A0A0S2GLS0_CUCSA	1.9e-68	94.96	Uncharacterized protein OS=Cucumis sativus OX=3659 PE=4 SV=1	[more]
tr\|A0A1S3B0P9\|A0A1S3B0P9_CUCME	1.2e-65	94.33	transcription factor RAX2 OS=Cucumis melo OX=3656 GN=LOC103484882 PE=4 SV=1	[more]
tr\|A0A0S2GLP3\|A0A0S2GLP3_CUCSA	1.7e-64	93.66	Uncharacterized protein OS=Cucumis sativus OX=3659 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G028750.1	CsGy6G028750.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G028750	Wax gourd	cgybwgoB591
CsGy6G028750	Cucumber (Gy14) v2	cgybcgybB129
CsGy6G028750	Cucurbita maxima (Rimu)	cgybcmaB699
CsGy6G028750	Cucurbita maxima (Rimu)	cgybcmaB715
CsGy6G028750	Cucurbita maxima (Rimu)	cgybcmaB831
CsGy6G028750	Cucurbita maxima (Rimu)	cgybcmaB861
CsGy6G028750	Cucurbita moschata (Rifu)	cgybcmoB682
CsGy6G028750	Cucurbita moschata (Rifu)	cgybcmoB811
CsGy6G028750	Cucurbita moschata (Rifu)	cgybcmoB843
CsGy6G028750	Cucurbita pepo (Zucchini)	cgybcpeB710
CsGy6G028750	Cucurbita pepo (Zucchini)	cgybcpeB810
CsGy6G028750	Cucurbita pepo (Zucchini)	cgybcpeB870
CsGy6G028750	Cucumber (Chinese Long) v2	cgybcuB269
CsGy6G028750	Cucumber (Chinese Long) v2	cgybcuB281
CsGy6G028750	Bottle gourd (USVL1VR-Ls)	cgyblsiB398
CsGy6G028750	Bottle gourd (USVL1VR-Ls)	cgyblsiB425
CsGy6G028750	Bottle gourd (USVL1VR-Ls)	cgyblsiB434
CsGy6G028750	Melon (DHL92) v3.5.1	cgybmeB444
CsGy6G028750	Melon (DHL92) v3.6.1	cgybmedB410
CsGy6G028750	Melon (DHL92) v3.6.1	cgybmedB440
CsGy6G028750	Watermelon (Charleston Gray)	cgybwcgB399
CsGy6G028750	Watermelon (97103) v1	cgybwmB468
CsGy6G028750	Wild cucumber (PI 183967)	cgybcpiB276
CsGy6G028750	Wild cucumber (PI 183967)	cgybcpiB287
CsGy6G028750	Silver-seed gourd	carcgybB0003
CsGy6G028750	Silver-seed gourd	carcgybB0418
CsGy6G028750	Cucumber (Chinese Long) v3	cgybcucB284
CsGy6G028750	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G028750	Watermelon (97103) v2	cgybwmbB394