CsGy6G023050 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G023050
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Putative methyltransferase family protein
Location	Chr6 : 23351083 .. 23351318 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATCTCCCGAATCACTTGGAAATTCTGCTGGTGAGGCAAACAAGATGGAAAATAAGTTACTTGTTTGGATGTACTGATATTTAAAATTTTATGCAGAACTAGCAGCTGAGAAGCTTGAATGGGGAAATTCTGATCAGATAACCCAAGTTATGGACAAACATTCTGGTGGATTTGATCTAATCCTCGGTGCTGATATCTATATCCTGATTCTTTCTTCTTCATTTTTCTCATGA

mRNA sequence

ATGCATCTCCCGAATCACTTGGAAATTCTGCTGGTGAGGCAAACAAGATGGAAAATAAAACTAGCAGCTGAGAAGCTTGAATGGGGAAATTCTGATCAGATAACCCAAGTTATGGACAAACATTCTGGTGGATTTGATCTAATCCTCGGTGCTGATATCTATATCCTGATTCTTTCTTCTTCATTTTTCTCATGA

Coding sequence (CDS)

ATGCATCTCCCGAATCACTTGGAAATTCTGCTGGTGAGGCAAACAAGATGGAAAATAAAACTAGCAGCTGAGAAGCTTGAATGGGGAAATTCTGATCAGATAACCCAAGTTATGGACAAACATTCTGGTGGATTTGATCTAATCCTCGGTGCTGATATCTATATCCTGATTCTTTCTTCTTCATTTTTCTCATGA

Protein sequence

MHLPNHLEILLVRQTRWKIKLAAEKLEWGNSDQITQVMDKHSGGFDLILGADIYILILSSSFFS

Homology

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BLAST of CsGy6G023050 vs. NCBI nr
Match: KGN48082.1 (hypothetical protein Csa_6G429120 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 2.9e-15
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 0


Query: 20  KLAAEKLEWGNSDQITQVMDKHSGGFDLILGADIYILILSSSFFS 65
           +LAAEKLEWGNSDQITQVMDKHSGGFDLILGADIYILILSSSFFS
Sbjct: 129 ELAAEKLEWGNSDQITQVMDKHSGGFDLILGADIYILILSSSFFS 173

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BLAST of CsGy6G023050 vs. NCBI nr
Match: XP_004140186.1 (PREDICTED: protein N-lysine methyltransferase METTL21A isoform X1 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-09
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 20  KLAAEKLEWGNSDQITQVMDKHSGGFDLILGADI 54
           +LAAEKLEWGNSDQITQVMDKHSGGFDLILGADI
Sbjct: 129 ELAAEKLEWGNSDQITQVMDKHSGGFDLILGADI 162

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BLAST of CsGy6G023050 vs. NCBI nr
Match: XP_008449636.1 (PREDICTED: protein N-lysine methyltransferase METTL21A isoform X1 [Cucumis melo])

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-09
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 20  KLAAEKLEWGNSDQITQVMDKHSGGFDLILGADI 54
           +LAAEKLEWGNSDQITQVMDKHSGGFDLILGADI
Sbjct: 129 ELAAEKLEWGNSDQITQVMDKHSGGFDLILGADI 162

[Close]

BLAST of CsGy6G023050 vs. NCBI nr
Match: XP_008449637.1 (PREDICTED: protein N-lysine methyltransferase METTL21A isoform X2 [Cucumis melo])

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-09
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 20  KLAAEKLEWGNSDQITQVMDKHSGGFDLILGADI 54
           +LAAEKLEWGNSDQITQVMDKHSGGFDLILGADI
Sbjct: 89  ELAAEKLEWGNSDQITQVMDKHSGGFDLILGADI 122

[Close]

BLAST of CsGy6G023050 vs. NCBI nr
Match: XP_011657607.1 (PREDICTED: protein N-lysine methyltransferase METTL21A isoform X2 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-09
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 20  KLAAEKLEWGNSDQITQVMDKHSGGFDLILGADI 54
           +LAAEKLEWGNSDQITQVMDKHSGGFDLILGADI
Sbjct: 89  ELAAEKLEWGNSDQITQVMDKHSGGFDLILGADI 122

[Close]

BLAST of CsGy6G023050 vs. TAIR10
Match: AT2G26810.1 (Putative methyltransferase family protein)

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-08
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 20  KLAAEKLEWGNSDQITQVMDKHSGGFDLILGADI 54
           +L A KLEWGNSDQ+ Q++ KH+ GFDLILGADI
Sbjct: 138 ELEAAKLEWGNSDQLGQILKKHNDGFDLILGADI 171

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BLAST of CsGy6G023050 vs. TrEMBL
Match: tr|A0A0A0KI86|A0A0A0KI86_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G429120 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.9e-15
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 0


Query: 20  KLAAEKLEWGNSDQITQVMDKHSGGFDLILGADIYILILSSSFFS 65
           +LAAEKLEWGNSDQITQVMDKHSGGFDLILGADIYILILSSSFFS
Sbjct: 129 ELAAEKLEWGNSDQITQVMDKHSGGFDLILGADIYILILSSSFFS 173

[Close]

BLAST of CsGy6G023050 vs. TrEMBL
Match: tr|A0A1S3BNE5|A0A1S3BNE5_CUCME (protein N-lysine methyltransferase METTL21A isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491460 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 7.1e-10
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 20  KLAAEKLEWGNSDQITQVMDKHSGGFDLILGADI 54
           +LAAEKLEWGNSDQITQVMDKHSGGFDLILGADI
Sbjct: 129 ELAAEKLEWGNSDQITQVMDKHSGGFDLILGADI 162

[Close]

BLAST of CsGy6G023050 vs. TrEMBL
Match: tr|A0A1S3BLV1|A0A1S3BLV1_CUCME (protein N-lysine methyltransferase METTL21A isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491460 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 7.1e-10
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 20  KLAAEKLEWGNSDQITQVMDKHSGGFDLILGADI 54
           +LAAEKLEWGNSDQITQVMDKHSGGFDLILGADI
Sbjct: 89  ELAAEKLEWGNSDQITQVMDKHSGGFDLILGADI 122

[Close]

BLAST of CsGy6G023050 vs. TrEMBL
Match: tr|A0A0D2LQZ5|A0A0D2LQZ5_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G135400 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.8e-09
Identity = 31/43 (72.09%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 21  LAAEKLEWGNSDQITQVMDKHSGGFDLILGADIYILILSSSFF 64
           L AEKLEWGNSDQI +++ K+ GGF+LILGADIYILI +S FF
Sbjct: 131 LEAEKLEWGNSDQINRILHKYPGGFELILGADIYILITASQFF 173

[Close]

BLAST of CsGy6G023050 vs. TrEMBL
Match: tr|A0A067LG99|A0A067LG99_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_22731 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.0e-08
Identity = 30/40 (75.00%), Postives = 37/40 (92.50%), Query Frame = 0


Query: 20  KLAAEKLEWGNSDQITQVMDKHSGGFDLILGADIYILILS 60
           +LAAEKLEWGNSDQ+ Q++ ++S GFDLILGADIYILI+S
Sbjct: 141 ELAAEKLEWGNSDQVNQILQRYSEGFDLILGADIYILIIS 180

The following BLAST results are available for this feature:

BLAST of CsGy6G023050 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48082.1	2.9e-15	97.78	hypothetical protein Csa_6G429120 [Cucumis sativus]	[more]
XP_004140186.1	1.1e-09	97.06	PREDICTED: protein N-lysine methyltransferase METTL21A isoform X1 [Cucumis sativ...	[more]
XP_008449636.1	1.1e-09	97.06	PREDICTED: protein N-lysine methyltransferase METTL21A isoform X1 [Cucumis melo]	[more]
XP_008449637.1	1.1e-09	97.06	PREDICTED: protein N-lysine methyltransferase METTL21A isoform X2 [Cucumis melo]	[more]
XP_011657607.1	1.1e-09	97.06	PREDICTED: protein N-lysine methyltransferase METTL21A isoform X2 [Cucumis sativ...	[more]

BLAST of CsGy6G023050 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G26810.1	1.1e-08	70.59	Putative methyltransferase family protein	[more]

BLAST of CsGy6G023050 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy6G023050 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KI86\|A0A0A0KI86_CUCSA	1.9e-15	97.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G429120 PE=4 SV=1	[more]
tr\|A0A1S3BNE5\|A0A1S3BNE5_CUCME	7.1e-10	97.06	protein N-lysine methyltransferase METTL21A isoform X1 OS=Cucumis melo OX=3656 G...	[more]
tr\|A0A1S3BLV1\|A0A1S3BLV1_CUCME	7.1e-10	97.06	protein N-lysine methyltransferase METTL21A isoform X2 OS=Cucumis melo OX=3656 G...	[more]
tr\|A0A0D2LQZ5\|A0A0D2LQZ5_GOSRA	7.8e-09	72.09	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G135400 PE=4 ...	[more]
tr\|A0A067LG99\|A0A067LG99_JATCU	1.0e-08	75.00	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_22731 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006479	protein methylation

Vocabulary: **Molecular Function**
Term	Definition
GO:0008276	protein methyltransferase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR038899	METTL22

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032259	methylation
biological_process	GO:0006479	protein methylation
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0008276	protein methyltransferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G023050.1	CsGy6G023050.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23108:SF2	METHYLTRANSFERASE FAMILY PROTEIN-RELATED	coord: 17..59
IPR038899	Methyltransferase-like protein 22	PANTHER	PTHR23108	METHYLTRANSFERASE-RELATED	coord: 17..59

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G023050	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G023050	Watermelon (97103) v2	cgybwmbB408
CsGy6G023050	Wax gourd	cgybwgoB568
CsGy6G023050	Cucurbita maxima (Rimu)	cgybcmaB799
CsGy6G023050	Cucurbita maxima (Rimu)	cgybcmaB819
CsGy6G023050	Cucurbita moschata (Rifu)	cgybcmoB777
CsGy6G023050	Cucurbita moschata (Rifu)	cgybcmoB798
CsGy6G023050	Cucurbita pepo (Zucchini)	cgybcpeB755
CsGy6G023050	Cucurbita pepo (Zucchini)	cgybcpeB845
CsGy6G023050	Cucumber (Chinese Long) v2	cgybcuB281
CsGy6G023050	Bottle gourd (USVL1VR-Ls)	cgyblsiB379
CsGy6G023050	Melon (DHL92) v3.5.1	cgybmeB432
CsGy6G023050	Melon (DHL92) v3.6.1	cgybmedB427
CsGy6G023050	Watermelon (Charleston Gray)	cgybwcgB403
CsGy6G023050	Watermelon (97103) v1	cgybwmB480
CsGy6G023050	Wild cucumber (PI 183967)	cgybcpiB287
CsGy6G023050	Silver-seed gourd	carcgybB0530
CsGy6G023050	Silver-seed gourd	carcgybB0914