CsGy6G018430 (gene) Cucumber (Gy14) v2

Overview
NameCsGy6G018430
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUnknown Protein
LocationChr6 : 19176717 .. 19177421 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCATTATCTGCACTCTTATCTTCAGAACAGAAAAGGATGGATCTGATGTATGGGGCATCTTACCTCAGTTTCACTTTCCAATCCCATTACCCCAATTTGGCTGTTCAATTTCCCCAATCTGACGGATTTTCTTTCCCAATCGTGATATTTTACCATATCTATGCACAAAATTTGTACCCATAATACATTAAAACAAAGCTACAAATTCTGAAATAACAAGAATTGTACAACAGAGCCAATCAATTTTGCAAGAAACGAACACGATGAAAGAAACCTATTCATAATTGAAAGAAGCAGATATAGCAATTGTTTCTTTCTGATCTTATCTGTTTGTTGATCCTAAGCACATGCACAAGGATTTTCCGCACTAACAATAACGTCCTCATCGTCGCTCCTAAACACCAAATAACCTATCGCGAGCCCAAAGACAATTGCAATGAAAACCCCGCCATTGAAGGACATGATCGCGAGCATAAGAAGGTAGCCAATCGCCGAGTTGACTCCGAAAAACAGAGCTCCAGCAAATCTCACAGCCTGAAACTTCCCAGCCACTTTAGATCGAAGGAGAGGGGCCTCGATCTCCGACGGCGACGGCTTCGGACACTGAAGAAGCTTCAAACGGATTCGATAATTCTCCAAATACTGGTAGAAAATGGAGACGATGAAACAAGCAAGCAAAGAGAGGGAATAGCTAAACCATGA

mRNA sequence

ATGCCATTATCTGCACTCTTATCTTCAGAACAGAAAAGGATGGATCTGATGATTTTCCGCACTAACAATAACGTCCTCATCGTCGCTCCTAAACACCAAATAACCTATCGCGAGCCCAAAGACAATTGCAATGAAAACCCCGCCATTGAAGGACATGATCGCGAGCATAAGAAGGTAGCCAATCGCCGAGTTGACTCCGAAAAACAGAGCTCCAGCAAATCTCACAGCCTGAAACTTCCCAGCCACTTTAGATCGAAGGAGAGGGGCCTCGATCTCCGACGGCGACGGCTTCGGACACTGAAGAAGCTTCAAACGGATTCGATAATTCTCCAAATACTGGTAGAAAATGGAGACGATGAAACAAGCAAGCAAAGAGAGGGAATAGCTAAACCATGA

Coding sequence (CDS)

ATGCCATTATCTGCACTCTTATCTTCAGAACAGAAAAGGATGGATCTGATGATTTTCCGCACTAACAATAACGTCCTCATCGTCGCTCCTAAACACCAAATAACCTATCGCGAGCCCAAAGACAATTGCAATGAAAACCCCGCCATTGAAGGACATGATCGCGAGCATAAGAAGGTAGCCAATCGCCGAGTTGACTCCGAAAAACAGAGCTCCAGCAAATCTCACAGCCTGAAACTTCCCAGCCACTTTAGATCGAAGGAGAGGGGCCTCGATCTCCGACGGCGACGGCTTCGGACACTGAAGAAGCTTCAAACGGATTCGATAATTCTCCAAATACTGGTAGAAAATGGAGACGATGAAACAAGCAAGCAAAGAGAGGGAATAGCTAAACCATGA

Protein sequence

MPLSALLSSEQKRMDLMIFRTNNNVLIVAPKHQITYREPKDNCNENPAIEGHDREHKKVANRRVDSEKQSSSKSHSLKLPSHFRSKERGLDLRRRRLRTLKKLQTDSIILQILVENGDDETSKQREGIAKP
Homology
[Close]
BLAST of CsGy6G018430 vs. NCBI nr
Match: EXB74911.1 (G-protein coupled receptor 1 [Morus notabilis])

HSP 1 Score: 57.8 bits (138), Expect = 3.3e-05
Identity = 43/125 (34.40%), Postives = 72/125 (57.60%), Query Frame = 0 

Query: 12  KRMDL---MIFRTNNNVLIVAPKHQITYREPKDNCNENPAIEGHDREHKKVANRRVDSEK 71
           +R+DL    I     ++LI   K +    E +++ +++ ++E HD EH++V +RRV +E+
Sbjct: 257 ERLDLTSARIINDKRDILIGGTKEKTADGEAQNDGDKHASVERHDCEHEEVPDRRVHAEE 316

Query: 72  QSSSKSHSLKLPS-HFRSKERGLD-LRRRRLRTLKKLQTDSIILQILVENGDDETSKQRE 131
           QSS +      P+     +ER LD LRRRRL     L +++ IL +LVE G D+  +Q E
Sbjct: 317 QSSGEPRQRPFPAGEPLLEERSLDLLRRRRLSGGGDLDSEAEILHVLVEGGGDQAGEQGE 376

[Close]
BLAST of CsGy6G018430 vs. TrEMBL
Match: tr|W9RF93|W9RF93_9ROSA (G-protein coupled receptor 1 OS=Morus notabilis OX=981085 GN=L484_018619 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.2e-05
Identity = 43/125 (34.40%), Postives = 72/125 (57.60%), Query Frame = 0 

Query: 12  KRMDL---MIFRTNNNVLIVAPKHQITYREPKDNCNENPAIEGHDREHKKVANRRVDSEK 71
           +R+DL    I     ++LI   K +    E +++ +++ ++E HD EH++V +RRV +E+
Sbjct: 257 ERLDLTSARIINDKRDILIGGTKEKTADGEAQNDGDKHASVERHDCEHEEVPDRRVHAEE 316

Query: 72  QSSSKSHSLKLPS-HFRSKERGLD-LRRRRLRTLKKLQTDSIILQILVENGDDETSKQRE 131
           QSS +      P+     +ER LD LRRRRL     L +++ IL +LVE G D+  +Q E
Sbjct: 317 QSSGEPRQRPFPAGEPLLEERSLDLLRRRRLSGGGDLDSEAEILHVLVEGGGDQAGEQGE 376

The following BLAST results are available for this feature:
BLAST of CsGy6G018430 vs. NCBI nr
Match NameE-valueIdentityDescription
EXB74911.13.3e-0534.40G-protein coupled receptor 1 [Morus notabilis][more]
BLAST of CsGy6G018430 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy6G018430 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy6G018430 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|W9RF93|W9RF93_9ROSA2.2e-0534.40G-protein coupled receptor 1 OS=Morus notabilis OX=981085 GN=L484_018619 PE=4 SV... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G018430.1CsGy6G018430.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..72
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..91

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy6G018430Watermelon (97103) v2cgybwmbB463
CsGy6G018430Wax gourdcgybwgoB559
CsGy6G018430Cucurbita maxima (Rimu)cgybcmaB718
CsGy6G018430Cucurbita moschata (Rifu)cgybcmoB702
CsGy6G018430Cucurbita pepo (Zucchini)cgybcpeB879
CsGy6G018430Cucumber (Chinese Long) v2cgybcuB275
CsGy6G018430Cucumber (Chinese Long) v2cgybcuB281
CsGy6G018430Bottle gourd (USVL1VR-Ls)cgyblsiB437
CsGy6G018430Melon (DHL92) v3.5.1cgybmeB406
CsGy6G018430Melon (DHL92) v3.6.1cgybmedB405
CsGy6G018430Watermelon (Charleston Gray)cgybwcgB454
CsGy6G018430Watermelon (97103) v1cgybwmB427
CsGy6G018430Wild cucumber (PI 183967)cgybcpiB282
CsGy6G018430Wild cucumber (PI 183967)cgybcpiB287
CsGy6G018430Cucumber (Chinese Long) v3cgybcucB289
CsGy6G018430Cucumber (Chinese Long) v3cgybcucB298