CsGy6G018250 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G018250
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr6 : 19011918 .. 19012156 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCACTCGCTGACAGGTTGTGAGTTTACTCGACGTGGCGGGGAATGTGAGCGAGTGGGGGAGATATGGGTAGTCGCGGACTGTAGTCAAAAGAAGAAAGTAAGAGAGGGTGTACGAAGGTTCTGGATGGACCAATGAGAGAGTGCAACGTGGAGGAAGATGATAGAAGTGGAGCCGGTGGTGTCGGTATTGATTGGATGAAAACGTTGAAGGTCGGCAAGAGTGGGGCCCAATGA

mRNA sequence

ATGGACCACTCGCTGACAGGTTGTGAGTTTACTCGACGTGGCGGGGAATGTGAGCGAGTGGGGGAGATATGGGTAGTCGCGGACTGTAGTCAAAAGAAGAAAGTTCTGGATGGACCAATGAGAGAGTGCAACGTGGAGGAAGATGATAGAAGTGGAGCCGGTGGTGTCGGTATTGATTGGATGAAAACGTTGAAGGTCGGCAAGAGTGGGGCCCAATGA

Coding sequence (CDS)

ATGGACCACTCGCTGACAGGTTGTGAGTTTACTCGACGTGGCGGGGAATGTGAGCGAGTGGGGGAGATATGGGTAGTCGCGGACTGTAGTCAAAAGAAGAAAGTTCTGGATGGACCAATGAGAGAGTGCAACGTGGAGGAAGATGATAGAAGTGGAGCCGGTGGTGTCGGTATTGATTGGATGAAAACGTTGAAGGTCGGCAAGAGTGGGGCCCAATGA

Protein sequence

MDHSLTGCEFTRRGGECERVGEIWVVADCSQKKKVLDGPMRECNVEEDDRSGAGGVGIDWMKTLKVGKSGAQ

Homology

[Close]

BLAST of CsGy6G018250 vs. NCBI nr
Match: KGN47557.1 (hypothetical protein Csa_6G358700 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 7.0e-18
Identity = 50/72 (69.44%), Postives = 50/72 (69.44%), Query Frame = 0


Query: 1  MDHSLTGCEFTRRGGECERVGEIWVVADCSQKKKVLDGPMRECNVEEDDRSGAGGVGIDW 60
          MDHSLTGCEFTRRGGECERVGEIW                      EDDRSGAGGVGIDW
Sbjct: 1  MDHSLTGCEFTRRGGECERVGEIW----------------------EDDRSGAGGVGIDW 50

Query: 61 MKTLKVGKSGAQ 73
          MKTLKVGKSGAQ
Sbjct: 61 MKTLKVGKSGAQ 50

[Close]

BLAST of CsGy6G018250 vs. TrEMBL
Match: tr|A0A0A0KGR8|A0A0A0KGR8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G358700 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 4.7e-18
Identity = 50/72 (69.44%), Postives = 50/72 (69.44%), Query Frame = 0


Query: 1  MDHSLTGCEFTRRGGECERVGEIWVVADCSQKKKVLDGPMRECNVEEDDRSGAGGVGIDW 60
          MDHSLTGCEFTRRGGECERVGEIW                      EDDRSGAGGVGIDW
Sbjct: 1  MDHSLTGCEFTRRGGECERVGEIW----------------------EDDRSGAGGVGIDW 50

Query: 61 MKTLKVGKSGAQ 73
          MKTLKVGKSGAQ
Sbjct: 61 MKTLKVGKSGAQ 50

The following BLAST results are available for this feature:

BLAST of CsGy6G018250 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47557.1	7.0e-18	69.44	hypothetical protein Csa_6G358700 [Cucumis sativus]	[more]

BLAST of CsGy6G018250 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy6G018250 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy6G018250 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KGR8\|A0A0A0KGR8_CUCSA	4.7e-18	69.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G358700 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G018250.1	CsGy6G018250.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G018250	Csa6G358700	Cucumber (Chinese Long) v2	cgybcuB281
CsGy6G018250	CSPI06G18810	Wild cucumber (PI 183967)	cgybcpiB287
CsGy6G018250	CsaV3_6G031710	Cucumber (Chinese Long) v3	cgybcucB298

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G018250	Cucurbita maxima (Rimu)	cgybcmaB718
CsGy6G018250	Cucurbita maxima (Rimu)	cgybcmaB845
CsGy6G018250	Cucurbita moschata (Rifu)	cgybcmoB702
CsGy6G018250	Cucurbita moschata (Rifu)	cgybcmoB826
CsGy6G018250	Cucurbita pepo (Zucchini)	cgybcpeB715
CsGy6G018250	Cucurbita pepo (Zucchini)	cgybcpeB879
CsGy6G018250	Bottle gourd (USVL1VR-Ls)	cgyblsiB437
CsGy6G018250	Melon (DHL92) v3.5.1	cgybmeB406
CsGy6G018250	Melon (DHL92) v3.6.1	cgybmedB405
CsGy6G018250	Watermelon (Charleston Gray)	cgybwcgB454
CsGy6G018250	Watermelon (97103) v1	cgybwmB427
CsGy6G018250	Silver-seed gourd	carcgybB0225
CsGy6G018250	Watermelon (97103) v2	cgybwmbB463
CsGy6G018250	Wax gourd	cgybwgoB559