CsGy6G018140 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G018140
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	protein DSS1 HOMOLOG ON CHROMOSOME V-like
Location	Chr6 : 18925604 .. 18929792 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTATACTTGCATGATTTTCAAATTTTGCAAAAACTTGGTAAATAGTTTGGACAAACTTTTTTATATTTAAAAAGCTACTAATAAAATAAAATGAAATTGAGTTTCTAAAGTAATAATGAATTAGAAAGCATCGGCTTGCCGACTTGTCTCTCAAGATATCTCGACTCATTTTTCCAATAGAAATCAAAGAAACACGAGACTCCCTCGATCTTCCCTGCTCCACGGCTCTCTCATCACAACTCTCTCCCAAGGTTCTTAGCTTCTTTCTCTCTCCATTTTTATCTGCTTTCAATTTAATGTTACATTTCTCACTCTCGACTATGCTTTACTGTTTGTCTTTTGAATTATGATTTATTTGATTGCTTGCTTTATAATTTCTGCTGCGATTCTCCTCAGAATTAGAAGGGAAGAAAACGAACATATGTATTTTCTTATTTTTCCTTTTGCTTCCACTCCTCTCTTCTGGGTCTGCTTTCTTCTCTGTTTTTTTCTAGAATCTGCAACCACAAATGTTGAATGGGGCCACCTCAGTGTGGCTGCGTGATAAGAACTGTTTGATTTCTGTGCTTTCGATTATGTATTTGGAGAACAGAAAAGTTTCAGAACTTAAGACCGTATATTTGATATTCGAAGGCTACCGTTTCAAAGATTTGTTTTTCCTTTTCGAATTGGCTCCCCATGCTTCATACTGTAGTACAATAAAAAAATGCAAAAATCCCATTTAGTTCTTTGAATTATCTTAGTACAACTTTTAAGTGTAGTTAGATGGATGATGGAAAAGGGGCCTAGCCTGTGAATTGGGATGTGGTTGTGAAGTCTGTGAACATGAGCTTGATCTTGACAATTTAAGGACTTGTACAAAGACCTGTGGGGGAAATGGCTTTAACATTTCCTTCTCGAGTCTAAAACCAGTGGTGGAGGATTATCGCGAGTAAGTACGGTGTCCCCCCTTTGAGTGGAAGGATTTCTCTATTGACCTTCCTTCTTTCTCTAATTTAGTCTATTGTGTTGTGGGGAAGGGGATGGAATCGTGCTTTTGGGGGGGATCAGTGGTAGGAGATAGACCCTCTCATCTTTACCATTGACTCTTTGAAAAACTGTTTTGTGGATGAGGTTTTAGTTTGGTCTGGGACTTTGGGAGCTCCCTCTCTTTGTCGTGCGGCTTTCATTGTCCTTTAGAGAAATGATGGATGTCACAACCCTTCTGTCTCTGATAGAGGAGTTGGATTAGGATCAGGGGAAGGGATGTGAATATTTGATGCTCTAACCCTTCTGGAGGTCTCTCTTGTACTTCTTTTCCTTTTTCAATTGTTTGATGGACCCTTCACCCAATATGAATTTTTTTTTTCTTAGCTCTCTTGAACATTAAGATTCCAAAGAAGGTTAAGTTCTTTGTCTACCAGGTCATCCATAGAGAATGTAACACTCTTGATTAGGTCTCGAGAAAGCAACCTACATTTATTGGCCCATTTTCTTAACCCTCCTTTGGAAGGCAAAGGAAGACCTGGATCATATTCTTTGAAGATTGTATGAACGATTTTTTGAGGCGTTTGGCTTTTCATTAGCCCACTCTAGAGACTTGAACATTTCTCATGGTTCCTTCTCCATTTGCCTTTTAAGGAGAAGGGTTGTTTCTCATGGCTTGCCGGAGTGTGCTATATTGTAGGTTCTTTGAGGAGAGAGGAATAATTGACTGTTTAGAGGATTGGAAAGAGATCCACGTGACATTTGGTCCTTTCATTGCTTCCATGTTTCTCTTTGGACTTTGGTGGTCTTTTGCAACTACCCAATAGGTATTATTCAATAGAACTAGAAAACCCTTCCTTTATTGGCCTCTCTTTTCATGGTTTTTTCCCCTTTCTGTGTGCTCATTCATTTTTTCTCAATGAAAGGTTGTTTTCTCATTAAAAAACAAAAAGGAAAAAAAAAAAATGTGTTTTCAGTTGTTTATCTTTCACTTGTTAATGTGATTCAAAATTTTTGCTGATCTATCAGATTACAAAGATTTGTAGATCACTTTGAGCTTTGTGATGGCAACTGAACTGAAAGCAGCTTCTGAGGAAGTGAAAGTTGACCTATTTGAGGATGATGATGAGTTTGAGGAGTTTGAGATTAATGAAGGTATGGCTTGTAATTATTTGTATTTTTTATTCCTTCCCTTGTTTGGATTCCTTTATTGCAGGTTTTAATTGCTCCCATTTTTCATTTATTACTGCCTCTTGTGCAAGATCCTCTTTCTTTCAGCCAAATGAATGTGAATGTTATGCAACGGGCTGGAAATCCTGTTACTGACTCAATCCTAACTGCTAGTATTTTTCATTTGGATGGCTCGTTACTGTTGCTTGTTCATTCATTATTTTTTCATTTATCAATGAAGCAGCTCCGTCTCTGTCAAAAAAAACACATTGTTTTGTAGTAAAGTTTTGGAATCCAATGTTTGAAACAAAGAAGCCAGAATGTTTGTAAACTTAATTGCAATAGTAACAATCAATGAAAAAAGCATATTGAGTATGATAAAGAAAAGTTGGATTAATGCATGGTTTTAAAAGACATGTCCCTCAAGTATACATTTGGATAGACCCTTTTCACTTTAAAAATTAATCTATAAAAGCCTCTAGATGTTTGTTTGAAGTTAATATAGTGACTTGTTTCTTGAAAAAAGTTCACAGAATTACTTATTTTCTTGGAAGAGAAAAAGTTTGTTTGGAGTTAATTTCTTCTGTGACATACATTTTCATTTTAAGCTCAGAAGTGCTTGAAGTGTTACATAAGGAAGCTGATGGAATAGCTTTTGAACAGAGTTTATTCAGATTTTGCTTTGATTACTTGAAATGGTCTTGGAAGAGTAAACTTTTTCCAACTTATATATTCCTCAAAAAAAAAAAAAAAAAAAAAAAGGAAGAGAGAGATAGATGACCATAAAACCACTTCTCTTTGTTCAGTGAAAGTGGGCGTTTTTCTCTATTTTTCAGAAATGGTTACGGTTACTTGATTGTTAGGAAGATAATAAAGATTTTTTTTGTTTTGTATTCAGACCATATGGTTACTCGTTGATGTTGTCAACTGAAACTATGAATTGACGGTCCTACAAGTCTTGCATATGTGACGTTAGCATAACACTGTTAATTGTTAACGTTAGCATAACGCTGTTAATTGTTAATGTTAGCATAACACTGTTAATTGTTAACTTAATGTTGTATGTTCTATACATGTCATGTCATAATCGCAATGTGTTAGCAAAAAATGCTTGTTTGGAAATGAAGTGAAGGATTTGATGAGATTGCCATTTTGATCGTGTCTGAGAGCTTTTATGTGTTTATTATTATGACTTTTTATCTAAATAAAAGTGTTTAGGTTTCTTAAGTGCACCTTGATTGATCTCACATAAAATTAGATTTATAGCATGTCACTGTCAAGTAATGCATGAGATTTTTTTATATGTATGCAATGATCATGAGGTCTTTGAACACATCCCTCCGTAAGGCAAGTCGTGGTGGTTCTTATTTGAGAGGACATAGAAGTTAGAGCACTGTAATATTGATGCTAATCAGATAGCTTAGAGATCTTTTCCTCCTTTTCAAAGTTATTTTGCAACACTAATATTTCCTCAGGTTCGGGTGTAAAGCTTATTACTCTTGTTATTCTTAGCCTAAAACTTTTAAGCCTTGTGATATTTTTATAATCTTTCCTTCTGGTTCTCATTGATCAAAATGGATTTCAGAGTGGGAAGTGAAGGAAGGCAAAGAAATCACTCAGCAATGGGAAGATGACTGGGATGATGATGATGTTAATGATGACTTCTCGTTGCAGCTGAAGAGAGAATTGGAGAACAATGCTGAGAAAAAATGAAGAGAATCTAGGCACTTTTCTTTTATCTGTCAACATCTATGTTTAATTTGCACTGTTTGACCTTCAAAGACGGTTTTATTATGCCTTCTATCACTCAAATAGTGTCATTAAAATAGGCATATTGAATACCTATAGCCTCATTGTACGACGACTAGAGATTAATTACGTTATAACATGGTAGTCACCTATCCATAATTTGAAGTTTTACTAATTTTTTGAAGTTGAGTAATTGTTCATGTTAATAATAGTAAACTGATTATGTAGGGTAGAAAATGGGGGAAAAACTTTTGTAAAAATTGAAAAAACCATAAACGATTTAAGAAATTGATGTATAG

mRNA sequence

ATGAGCTATACTTGCATGATTTTCAAATTTTGCAAAAACTTGGTAAATAGTTTGGACAAACTTTTTTATATTTAAAAAGCTACTAATAAAATAAAATGAAATTGAGTTTCTAAAGTAATAATGAATTAGAAAGCATCGGCTTGCCGACTTGTCTCTCAAGATATCTCGACTCATTTTTCCAATAGAAATCAAAGAAACACGAGACTCCCTCGATCTTCCCTGCTCCACGGCTCTCTCATCACAACTCTCTCCCAAGATTACAAAGATTTGTAGATCACTTTGAGCTTTGTGATGGCAACTGAACTGAAAGCAGCTTCTGAGGAAGTGAAAGTTGACCTATTTGAGGATGATGATGAGTTTGAGGAGTTTGAGATTAATGAAGAGTGGGAAGTGAAGGAAGGCAAAGAAATCACTCAGCAATGGGAAGATGACTGGGATGATGATGATGTTAATGATGACTTCTCGTTGCAGCTGAAGAGAGAATTGGAGAACAATGCTGAGAAAAAATGAAGAGAATCTAGGCACTTTTCTTTTATCTGTCAACATCTATGTTTAATTTGCACTGTTTGACCTTCAAAGACGGTTTTATTATGCCTTCTATCACTCAAATAGTGTCATTAAAATAGGCATATTGAATACCTATAGCCTCATTGTACGACGACTAGAGATTAATTACGTTATAACATGGTAGTCACCTATCCATAATTTGAAGTTTTACTAATTTTTTGAAGTTGAGTAATTGTTCATGTTAATAATAGTAAACTGATTATGTAGGGTAGAAAATGGGGGAAAAACTTTTGTAAAAATTGAAAAAACCATAAACGATTTAAGAAATTGATGTATAG

Coding sequence (CDS)

ATGGCAACTGAACTGAAAGCAGCTTCTGAGGAAGTGAAAGTTGACCTATTTGAGGATGATGATGAGTTTGAGGAGTTTGAGATTAATGAAGAGTGGGAAGTGAAGGAAGGCAAAGAAATCACTCAGCAATGGGAAGATGACTGGGATGATGATGATGTTAATGATGACTTCTCGTTGCAGCTGAAGAGAGAATTGGAGAACAATGCTGAGAAAAAATGA

Protein sequence

MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELENNAEKK

Homology

[Close]

BLAST of CsGy6G018140 vs. NCBI nr
Match: XP_004144232.1 (PREDICTED: probable 26S proteasome complex subunit sem1-2 [Cucumis sativus] >XP_008464856.1 PREDICTED: protein DSS1 HOMOLOG ON CHROMOSOME V-like [Cucumis melo] >KGN47541.1 hypothetical protein Csa_6G358050 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 4.3e-07
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MATELKAASEEVKVDLFEDDDEXXXXXXXXXXXXXXXXXXTQQWEXXXXXXXXXXXXXXX 60
          MATELKAASEEVKVDLFEDDDEXXXXXXXXXXXXXXXXXXTQQWEXXXXXXXXXXXXXXX
Sbjct: 1  MATELKAASEEVKVDLFEDDDEXXXXXXXXXXXXXXXXXXTQQWEXXXXXXXXXXXXXXX 60

Query: 61 XKRELENNAEKK 73
          XKRELENNAEKK
Sbjct: 61 XKRELENNAEKK 72

[Close]

BLAST of CsGy6G018140 vs. NCBI nr
Match: XP_023546762.1 (protein DSS1 HOMOLOG ON CHROMOSOME V-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 60.1 bits (144), Expect = 3.6e-06
Identity = 67/72 (93.06%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 1  MATELKAASEEVKVDLFEDDDEXXXXXXXXXXXXXXXXXXTQQWEXXXXXXXXXXXXXXX 60
          MATELKAA+EEVKVDLFEDDDEXXXXXXXXXXXXXXXXX TQQWEXXXXXXXXXXXXXX 
Sbjct: 1  MATELKAATEEVKVDLFEDDDEXXXXXXXXXXXXXXXXXITQQWEXXXXXXXXXXXXXXQ 60

Query: 61 XKRELENNAEKK 73
           KRELE+NAEKK
Sbjct: 61 LKRELESNAEKK 72

[Close]

BLAST of CsGy6G018140 vs. NCBI nr
Match: XP_023002030.1 (protein DSS1 HOMOLOG ON CHROMOSOME V-like [Cucurbita maxima] >XP_023002031.1 protein DSS1 HOMOLOG ON CHROMOSOME V-like [Cucurbita maxima])

HSP 1 Score: 54.7 bits (130), Expect = 1.5e-04
Identity = 64/72 (88.89%), Postives = 67/72 (93.06%), Query Frame = 0


Query: 1  MATELKAASEEVKVDLFEDDDEXXXXXXXXXXXXXXXXXXTQQWEXXXXXXXXXXXXXXX 60
          MATE KA +EEVKVDLFEDDDEXXXXXXXXXXXXXXXXXXTQQWEXXXXXXXXXXXXX  
Sbjct: 1  MATEPKAGTEEVKVDLFEDDDEXXXXXXXXXXXXXXXXXXTQQWEXXXXXXXXXXXXXLQ 60

Query: 61 XKRELENNAEKK 73
           KRELE+NAE+K
Sbjct: 61 LKRELEDNAERK 72

[Close]

BLAST of CsGy6G018140 vs. TrEMBL
Match: tr|A0A1S3CMK4|A0A1S3CMK4_CUCME (protein DSS1 HOMOLOG ON CHROMOSOME V-like OS=Cucumis melo OX=3656 GN=LOC103502626 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.8e-07
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MATELKAASEEVKVDLFEDDDEXXXXXXXXXXXXXXXXXXTQQWEXXXXXXXXXXXXXXX 60
          MATELKAASEEVKVDLFEDDDEXXXXXXXXXXXXXXXXXXTQQWEXXXXXXXXXXXXXXX
Sbjct: 1  MATELKAASEEVKVDLFEDDDEXXXXXXXXXXXXXXXXXXTQQWEXXXXXXXXXXXXXXX 60

Query: 61 XKRELENNAEKK 73
          XKRELENNAEKK
Sbjct: 61 XKRELENNAEKK 72

[Close]

BLAST of CsGy6G018140 vs. TrEMBL
Match: tr|A0A0A0KIG9|A0A0A0KIG9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G358050 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.8e-07
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MATELKAASEEVKVDLFEDDDEXXXXXXXXXXXXXXXXXXTQQWEXXXXXXXXXXXXXXX 60
          MATELKAASEEVKVDLFEDDDEXXXXXXXXXXXXXXXXXXTQQWEXXXXXXXXXXXXXXX
Sbjct: 1  MATELKAASEEVKVDLFEDDDEXXXXXXXXXXXXXXXXXXTQQWEXXXXXXXXXXXXXXX 60

Query: 61 XKRELENNAEKK 73
          XKRELENNAEKK
Sbjct: 61 XKRELENNAEKK 72

The following BLAST results are available for this feature:

BLAST of CsGy6G018140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144232.1	4.3e-07	100.00	PREDICTED: probable 26S proteasome complex subunit sem1-2 [Cucumis sativus] >XP_...	[more]
XP_023546762.1	3.6e-06	93.06	protein DSS1 HOMOLOG ON CHROMOSOME V-like isoform X2 [Cucurbita pepo subsp. pepo...	[more]
XP_023002030.1	1.5e-04	88.89	protein DSS1 HOMOLOG ON CHROMOSOME V-like [Cucurbita maxima] >XP_023002031.1 pro...	[more]

BLAST of CsGy6G018140 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy6G018140 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy6G018140 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CMK4\|A0A1S3CMK4_CUCME	2.8e-07	100.00	protein DSS1 HOMOLOG ON CHROMOSOME V-like OS=Cucumis melo OX=3656 GN=LOC10350262...	[more]
tr\|A0A0A0KIG9\|A0A0A0KIG9_CUCSA	2.8e-07	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G358050 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0008541	proteasome regulatory particle, lid subcomplex

Vocabulary: **Biological Process**
Term	Definition
GO:0043248	proteasome assembly
GO:0006406	mRNA export from nucleus

Vocabulary: **INTERPRO**
Term	Definition
IPR007834	DSS1_SEM1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006406	mRNA export from nucleus
biological_process	GO:0043248	proteasome assembly
cellular_component	GO:0008541	proteasome regulatory particle, lid subcomplex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G018140.1	CsGy6G018140.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007834	DSS1/SEM1	SMART	SM01385	DSS1_SEM1_2	coord: 9..67 e-value: 1.1E-19 score: 81.4
IPR007834	DSS1/SEM1	PFAM	PF05160	DSS1_SEM1	coord: 10..66 e-value: 6.5E-17 score: 61.3
IPR007834	DSS1/SEM1	PANTHER	PTHR16771	26 PROTEASOME COMPLEX SUBUNIT DSS1	coord: 1..72
None	No IPR available	PANTHER	PTHR16771:SF5	PROTEIN DELETION OF SUV3 SUPPRESSOR 1 I -RELATED	coord: 1..72

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G018140	CsaV3_6G031560	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G018140	Bhi04G001241	Wax gourd	cgybwgoB559
CsGy6G018140	Carg17646	Silver-seed gourd	carcgybB0144

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G018140	Watermelon (97103) v2	cgybwmbB463
CsGy6G018140	Cucurbita maxima (Rimu)	cgybcmaB718
CsGy6G018140	Cucurbita maxima (Rimu)	cgybcmaB845
CsGy6G018140	Cucurbita moschata (Rifu)	cgybcmoB702
CsGy6G018140	Cucurbita moschata (Rifu)	cgybcmoB826
CsGy6G018140	Cucurbita pepo (Zucchini)	cgybcpeB715
CsGy6G018140	Cucurbita pepo (Zucchini)	cgybcpeB879
CsGy6G018140	Cucumber (Chinese Long) v2	cgybcuB281
CsGy6G018140	Bottle gourd (USVL1VR-Ls)	cgyblsiB437
CsGy6G018140	Melon (DHL92) v3.5.1	cgybmeB406
CsGy6G018140	Melon (DHL92) v3.6.1	cgybmedB405
CsGy6G018140	Watermelon (Charleston Gray)	cgybwcgB454
CsGy6G018140	Watermelon (Charleston Gray)	cgybwcgB463
CsGy6G018140	Watermelon (97103) v1	cgybwmB427
CsGy6G018140	Wild cucumber (PI 183967)	cgybcpiB287
CsGy6G018140	Silver-seed gourd	carcgybB0225