CsGy6G016280 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G016280
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	RING-H2 finger protein ATL66-like
Location	Chr6 : 15347583 .. 15348206 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCATCGAGTCCGCCTCCGCCATCTCCGGTGCCTGATTACTCTAGCTGGAGTCCATGGTCAATCTCGACCATCGTCGTCGTATGCATCGTCTTCCTACTGTTGAGCAACTATAGACTTTTGAAACAATTGTGCCGTGTCCTTCATGGACTGTTTACCGGTCGACCTACGGTCCAATTTGAGGAAAACCCTAACAATCCTTCACTACAAATCCATGGCCATGGACTGGAGACCTCGATGATTCGTTTGCTACCTATATCGCAGTTCAAAAAGAATGAAGAATCCGAATCAACGACAAGTTTCAATACGGAATGCGCTGTTTGTTTGGGTGAATTCGAAGAAGGGGAATTGATTAAACACTTACCGAATTGTAATCATTCGTTTCATAGTCCTTGTATCGATGCCTGGTTCCGTAATCATTCGAGTTGCCCTCTCTGCAGATTGCAAGTCTTGAGTTTCTCTACTCCTGATTCTTCTTCTTCAGCAATGCTGGAAACGCTTGGAAGAGAAAATGTTCTACGAGAAAGAGTAGCGCATTATCAAACACTTCGTGCTCAAATTCTGCAGCACCCTGAATTCAGAAGAGATGCATCGATTCAAGGAACAGACCAACGAAACCGATGA

mRNA sequence

ATGCCATCGAGTCCGCCTCCGCCATCTCCGGTGCCTGATTACTCTAGCTGGAGTCCATGGTCAATCTCGACCATCGTCGTCGTATGCATCGTCTTCCTACTGTTGAGCAACTATAGACTTTTGAAACAATTGTGCCGTGTCCTTCATGGACTGTTTACCGGTCGACCTACGGTCCAATTTGAGGAAAACCCTAACAATCCTTCACTACAAATCCATGGCCATGGACTGGAGACCTCGATGATTCGTTTGCTACCTATATCGCAGTTCAAAAAGAATGAAGAATCCGAATCAACGACAAGTTTCAATACGGAATGCGCTGTTTGTTTGGGTGAATTCGAAGAAGGGGAATTGATTAAACACTTACCGAATTGTAATCATTCGTTTCATAGTCCTTGTATCGATGCCTGGTTCCGTAATCATTCGAGTTGCCCTCTCTGCAGATTGCAAGTCTTGAGTTTCTCTACTCCTGATTCTTCTTCTTCAGCAATGCTGGAAACGCTTGGAAGAGAAAATGTTCTACGAGAAAGAGTAGCGCATTATCAAACACTTCGTGCTCAAATTCTGCAGCACCCTGAATTCAGAAGAGATGCATCGATTCAAGGAACAGACCAACGAAACCGATGA

Coding sequence (CDS)

ATGCCATCGAGTCCGCCTCCGCCATCTCCGGTGCCTGATTACTCTAGCTGGAGTCCATGGTCAATCTCGACCATCGTCGTCGTATGCATCGTCTTCCTACTGTTGAGCAACTATAGACTTTTGAAACAATTGTGCCGTGTCCTTCATGGACTGTTTACCGGTCGACCTACGGTCCAATTTGAGGAAAACCCTAACAATCCTTCACTACAAATCCATGGCCATGGACTGGAGACCTCGATGATTCGTTTGCTACCTATATCGCAGTTCAAAAAGAATGAAGAATCCGAATCAACGACAAGTTTCAATACGGAATGCGCTGTTTGTTTGGGTGAATTCGAAGAAGGGGAATTGATTAAACACTTACCGAATTGTAATCATTCGTTTCATAGTCCTTGTATCGATGCCTGGTTCCGTAATCATTCGAGTTGCCCTCTCTGCAGATTGCAAGTCTTGAGTTTCTCTACTCCTGATTCTTCTTCTTCAGCAATGCTGGAAACGCTTGGAAGAGAAAATGTTCTACGAGAAAGAGTAGCGCATTATCAAACACTTCGTGCTCAAATTCTGCAGCACCCTGAATTCAGAAGAGATGCATCGATTCAAGGAACAGACCAACGAAACCGATGA

Protein sequence

MPSSPPPPSPVPDYSSWSPWSISTIVVVCIVFLLLSNYRLLKQLCRVLHGLFTGRPTVQFEENPNNPSLQIHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGEFEEGELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFSTPDSSSSAMLETLGRENVLRERVAHYQTLRAQILQHPEFRRDASIQGTDQRNR

Homology

[Close]

BLAST of CsGy6G016280 vs. NCBI nr
Match: KGN47355.1 (hypothetical protein Csa_6G303210 [Cucumis sativus])

HSP 1 Score: 361.7 bits (927), Expect = 1.7e-96
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0


Query: 33  LLLSNYRLLKQLCRVLHGLFTGRPTVQFEENPNNPSLQIHGHGLETSMIRLLPISQFKKN 92
           LLLSNYRLLKQLCRVLHGLFTGRPTVQFEENPNNPSLQIHGHGLETSMIRLLPISQFKKN
Sbjct: 33  LLLSNYRLLKQLCRVLHGLFTGRPTVQFEENPNNPSLQIHGHGLETSMIRLLPISQFKKN 92

Query: 93  EESESTTSFNTECAVCLGEFEEGELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLS 152
           EESESTTSFNTECAVCLGEFEEGELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLS
Sbjct: 93  EESESTTSFNTECAVCLGEFEEGELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLS 152

Query: 153 FSTPDSSSSAMLETLGRENVLRERVAHYQTLRAQILQHPEFRRDASIQGTDQRNR 208
           FSTPDSSSSAMLETLGRENVLRERVAHYQTLRAQILQHPEFRRDASIQGTDQRNR
Sbjct: 153 FSTPDSSSSAMLETLGRENVLRERVAHYQTLRAQILQHPEFRRDASIQGTDQRNR 207

[Close]

BLAST of CsGy6G016280 vs. NCBI nr
Match: XP_008448367.1 (PREDICTED: RING-H2 finger protein ATL66-like [Cucumis melo])

HSP 1 Score: 327.0 bits (837), Expect = 4.6e-86
Identity = 160/174 (91.95%), Postives = 166/174 (95.40%), Query Frame = 0


Query: 33  LLLSNYRLLKQLCRVLHGLFTGRPTVQFEENPNNPSLQIHGHGLETSMIRLLPISQFKKN 92
           LLLSNYRLLKQLCRVLH LF+GRP VQFEENPNNPSLQIH HGLETSMIRLLPISQFKK 
Sbjct: 33  LLLSNYRLLKQLCRVLHELFSGRPAVQFEENPNNPSLQIHAHGLETSMIRLLPISQFKKK 92

Query: 93  EESESTTSFNTECAVCLGEFEEGELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLS 152
           EESESTTSFNTECAVCLGEFEEGELIK+LPNCNHSFHS CIDAWFR+HSSCPLCRLQV S
Sbjct: 93  EESESTTSFNTECAVCLGEFEEGELIKNLPNCNHSFHSSCIDAWFRDHSSCPLCRLQVWS 152

Query: 153 FSTPDSSSSAMLETLGRENVLRERVAHYQTLRAQILQHPEFRRDASIQGTDQRN 207
           FSTPD SSSAMLETLGREN+LRERVAHYQTLRAQILQHPEFRRD SIQG+DQR+
Sbjct: 153 FSTPD-SSSAMLETLGRENILRERVAHYQTLRAQILQHPEFRRDESIQGSDQRD 205

[Close]

BLAST of CsGy6G016280 vs. NCBI nr
Match: XP_023512261.1 (RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 277.3 bits (708), Expect = 4.2e-71
Identity = 137/177 (77.40%), Postives = 152/177 (85.88%), Query Frame = 0


Query: 35  LSNYRLLKQLCRVLHGLFTGRPTVQFEENPNNPSLQIHGHGLETSMIRLLPISQFKKNEE 94
           LSNYR+LK+ CRV HGLF GR  VQF+ENPN+PS Q+H HGLE S IRLLPISQFKKNEE
Sbjct: 38  LSNYRILKRWCRVFHGLFCGRSVVQFDENPNDPSPQVHVHGLEASTIRLLPISQFKKNEE 97

Query: 95  SESTTSFNTECAVCLGEFEEGELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFS 154
           +EST S NTECAVCLGEFEEGELIK+LPNCNHSFHS CIDAW RNHSSCPLCRL V + S
Sbjct: 98  AESTASINTECAVCLGEFEEGELIKNLPNCNHSFHSSCIDAWLRNHSSCPLCRLHVSNLS 157

Query: 155 ----TPDSSSSAMLETLGRENVLRERVAHYQTLRAQILQHPEFRRDASIQGTDQRNR 208
               TPD SSSAMLETL RE+V  ERV++YQTLRAQILQ+P+ RRDAS+QG+DQRNR
Sbjct: 158 IDCPTPD-SSSAMLETLSREDVDGERVSYYQTLRAQILQNPDLRRDASVQGSDQRNR 213

[Close]

BLAST of CsGy6G016280 vs. NCBI nr
Match: XP_021643455.1 (RING-H2 finger protein ATL16-like [Hevea brasiliensis])

HSP 1 Score: 164.5 bits (415), Expect = 3.9e-37
Identity = 89/164 (54.27%), Postives = 110/164 (67.07%), Query Frame = 0


Query: 33  LLLSNYRLLKQLCRVLHGLFTGRPTVQF----EENPNNPSLQIHGHGLETSMIRLLPISQ 92
           ++ S YR+LK+LC  L+ L   R   Q     E +  + SLQ + HGLE++++  LPISQ
Sbjct: 35  VMFSYYRILKRLCCSLNTLTFSRNRFQMRRIGENSLGDSSLQYYSHGLESAIMCSLPISQ 94

Query: 93  FKKNEESESTTSFNTECAVCLGEFEEGELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRL 152
           FKK +E ES TS N+ECAVCLGEFEEGE +KHLP C H FH  CID WF+ HS+CPLCR 
Sbjct: 95  FKKEKEEESRTS-NSECAVCLGEFEEGEWLKHLPICAHVFHVACIDTWFQTHSNCPLCRS 154

Query: 153 QVLSFSTPDS-SSSAMLETLGRENVLRERVAHYQTLRAQILQHP 192
           QV   S   S S S +LETL RE+ L ER  HYQ LR +IL +P
Sbjct: 155 QVYDLSHEYSISVSILLETLRREDFLHERAKHYQILRPEILGNP 197

[Close]

BLAST of CsGy6G016280 vs. NCBI nr
Match: XP_021609310.1 (RING-H2 finger protein ATL1-like [Manihot esculenta] >OAY51755.1 hypothetical protein MANES_04G030200 [Manihot esculenta])

HSP 1 Score: 158.3 bits (399), Expect = 2.8e-35
Identity = 83/163 (50.92%), Postives = 106/163 (65.03%), Query Frame = 0


Query: 33  LLLSNYRLLKQLCRVLHGLFTGRPTVQF----EENPNNPSLQIHGHGLETSMIRLLPISQ 92
           +L S YR+L++LC  L+     R   Q     + N  + SLQ + HGLE++++R LPISQ
Sbjct: 35  VLFSYYRMLRRLCCTLNTQTLPRNRAQMSRINQNNLEDSSLQNYSHGLESNIMRSLPISQ 94

Query: 93  FKKNEESESTTSFNTECAVCLGEFEEGELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRL 152
           FKK EESE++   N ECAVCLGEFEEGE +KHLPNC H FH  CID WF+ HS+CPLCR 
Sbjct: 95  FKKEEESEAS---NRECAVCLGEFEEGEWLKHLPNCAHVFHVACIDTWFQTHSNCPLCRS 154

Query: 153 QVLSFSTPDS-SSSAMLETLGRENVLRERVAHYQTLRAQILQH 191
            V       S S   +L TL RE+   ER  HYQ LR++IL++
Sbjct: 155 HVYDLCHEYSISMDTLLHTLRREDFFNERAEHYQNLRSEILRN 194

[Close]

BLAST of CsGy6G016280 vs. TAIR10
Match: AT5G17600.1 (RING/U-box superfamily protein)

HSP 1 Score: 92.4 bits (228), Expect = 3.4e-19
Identity = 45/129 (34.88%), Postives = 69/129 (53.49%), Query Frame = 0


Query: 36  SNYRLLKQLCRVLHGLFTGRPTVQFEEN-----PNNPSLQIHGHGLETSMIRLLPISQFK 95
           S Y L+ + C   H   +   T+    N      +   +  +G GL  SMI+ + + ++K
Sbjct: 73  SYYTLISKYCH-RHHQTSSSETLNLNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYK 132

Query: 96  KNEESESTTSFNTECAVCLGEFEEGELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQV 155
             +         ++C+VCL EFEE E ++ LP CNH+FH PCID W ++HS+CPLCR  V
Sbjct: 133 SGDGFVD----GSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFV 192

Query: 156 LSFSTPDSS 160
              + P +S
Sbjct: 193 TGVNNPTAS 196

[Close]

BLAST of CsGy6G016280 vs. TAIR10
Match: AT3G16720.1 (TOXICOS EN LEVADURA 2)

HSP 1 Score: 89.0 bits (219), Expect = 3.8e-18
Identity = 45/106 (42.45%), Postives = 64/106 (60.38%), Query Frame = 0


Query: 58  VQFEENPNNPSLQ-IHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGEFEEGE 117
           V F  +P+  +   +   GL+ ++I+ LP+  F     S+ T     ECAVCL EFEE E
Sbjct: 76  VFFTADPSTAATSVVASRGLDPNVIKSLPVFTF-----SDETHKDPIECAVCLSEFEESE 135

Query: 118 LIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFSTPDSSSSA 163
             + LPNC H+FH  CID WF +HS+CPLCR  V S +  +S+++A
Sbjct: 136 TGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRSLVESLAGIESTAAA 176

[Close]

BLAST of CsGy6G016280 vs. TAIR10
Match: AT5G43420.1 (RING/U-box superfamily protein)

HSP 1 Score: 87.0 bits (214), Expect = 1.4e-17
Identity = 48/134 (35.82%), Postives = 75/134 (55.97%), Query Frame = 0


Query: 33  LLLSNYRLLKQLCRVLHGL-FTGRPTV-QFEENPNNP----SLQIHGHGLETSMIRLLPI 92
           LL+S Y  + + C   H +   GR ++ +   N  +P    S ++   GL+ S+IR +PI
Sbjct: 50  LLVSYYVFVIKCCLNWHRIDILGRFSLSRRRRNDQDPLMVYSPELRSRGLDESVIRAIPI 109

Query: 93  SQFKK----------NEESESTTSFNTECAVCLGEFEEGELIKHLPNCNHSFHSPCIDAW 151
            +FKK           E  E     + EC+VCL EF++ E ++ +PNC+H FH  CID W
Sbjct: 110 FKFKKRYDQNDGVFTGEGEEEEEKRSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVW 169

[Close]

BLAST of CsGy6G016280 vs. TAIR10
Match: AT5G05280.1 (RING/U-box superfamily protein)

HSP 1 Score: 84.7 bits (208), Expect = 7.2e-17
Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 0


Query: 75  GLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGEFEEGELIKHLPNCNHSFHSPCID 134
           G++   ++++P+  +    + ++     TEC +CLG+F EGE ++ LP CNH FH  CID
Sbjct: 88  GIKKRALKVIPVDSYSPELKMKA-----TECLICLGDFVEGETVRVLPKCNHGFHVKCID 147

Query: 135 AWFRNHSSCPLCRLQVLSFSTPDSSS 161
            W  +HSSCP CR  +L   TP + S
Sbjct: 148 TWLLSHSSCPTCRQSLLEHQTPANGS 168

[Close]

BLAST of CsGy6G016280 vs. TAIR10
Match: AT1G72220.1 (RING/U-box superfamily protein)

HSP 1 Score: 84.0 bits (206), Expect = 1.2e-16
Identity = 40/100 (40.00%), Postives = 59/100 (59.00%), Query Frame = 0


Query: 59  QFEENPNNPSLQIHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGEFEEGELI 118
           Q  E  ++P   I   GL+ S+I  + I  +K+ +         T+C VCL EFEE E +
Sbjct: 135 QDREQVDHPIWLIRTTGLQQSIINSITICNYKRGDGLIE----RTDCPVCLNEFEEDESL 194

Query: 119 KHLPNCNHSFHSPCIDAWFRNHSSCPLCR--LQVLSFSTP 157
           + LP CNH+FH  CID W  +H++CPLCR  + ++S +TP
Sbjct: 195 RLLPKCNHAFHISCIDTWLSSHTNCPLCRAGIAMISVTTP 230

[Close]

BLAST of CsGy6G016280 vs. Swiss-Prot
Match: sp|Q9LF64|ATL52_ARATH (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 6.2e-18
Identity = 45/129 (34.88%), Postives = 69/129 (53.49%), Query Frame = 0


Query: 36  SNYRLLKQLCRVLHGLFTGRPTVQFEEN-----PNNPSLQIHGHGLETSMIRLLPISQFK 95
           S Y L+ + C   H   +   T+    N      +   +  +G GL  SMI+ + + ++K
Sbjct: 73  SYYTLISKYCH-RHHQTSSSETLNLNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYK 132

Query: 96  KNEESESTTSFNTECAVCLGEFEEGELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQV 155
             +         ++C+VCL EFEE E ++ LP CNH+FH PCID W ++HS+CPLCR  V
Sbjct: 133 SGDGFVD----GSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFV 192

Query: 156 LSFSTPDSS 160
              + P +S
Sbjct: 193 TGVNNPTAS 196

[Close]

BLAST of CsGy6G016280 vs. Swiss-Prot
Match: sp|Q8L9T5|ATL2_ARATH (RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2)

HSP 1 Score: 89.0 bits (219), Expect = 6.9e-17
Identity = 45/106 (42.45%), Postives = 64/106 (60.38%), Query Frame = 0


Query: 58  VQFEENPNNPSLQ-IHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGEFEEGE 117
           V F  +P+  +   +   GL+ ++I+ LP+  F     S+ T     ECAVCL EFEE E
Sbjct: 76  VFFTADPSTAATSVVASRGLDPNVIKSLPVFTF-----SDETHKDPIECAVCLSEFEESE 135

Query: 118 LIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFSTPDSSSSA 163
             + LPNC H+FH  CID WF +HS+CPLCR  V S +  +S+++A
Sbjct: 136 TGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRSLVESLAGIESTAAA 176

[Close]

BLAST of CsGy6G016280 vs. Swiss-Prot
Match: sp|Q9LSW9|ATL16_ARATH (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.6e-16
Identity = 48/134 (35.82%), Postives = 75/134 (55.97%), Query Frame = 0


Query: 33  LLLSNYRLLKQLCRVLHGL-FTGRPTV-QFEENPNNP----SLQIHGHGLETSMIRLLPI 92
           LL+S Y  + + C   H +   GR ++ +   N  +P    S ++   GL+ S+IR +PI
Sbjct: 50  LLVSYYVFVIKCCLNWHRIDILGRFSLSRRRRNDQDPLMVYSPELRSRGLDESVIRAIPI 109

Query: 93  SQFKK----------NEESESTTSFNTECAVCLGEFEEGELIKHLPNCNHSFHSPCIDAW 151
            +FKK           E  E     + EC+VCL EF++ E ++ +PNC+H FH  CID W
Sbjct: 110 FKFKKRYDQNDGVFTGEGEEEEEKRSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVW 169

[Close]

BLAST of CsGy6G016280 vs. Swiss-Prot
Match: sp|Q8LF65|ATL17_ARATH (RING-H2 finger protein ATL17 OS=Arabidopsis thaliana OX=3702 GN=ATL17 PE=2 SV=2)

HSP 1 Score: 85.9 bits (211), Expect = 5.8e-16
Identity = 42/86 (48.84%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 75  GLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGEFEEGELIKHLPNCNHSFHSPCID 134
           GL  S+I+ LPI  F     S  T  F  EC+VCL EF++ E  + +PNC H+FH  CID
Sbjct: 51  GLNPSIIKSLPIFTF-----SAVTALFAMECSVCLSEFKDNESGRVMPNCKHTFHVHCID 110

Query: 135 AWFRNHSSCPLCRLQVLSFSTPDSSS 161
            WF +HSSCPLCR Q+  F+    SS
Sbjct: 111 MWFHSHSSCPLCRSQIEPFAGGVKSS 131

[Close]

BLAST of CsGy6G016280 vs. Swiss-Prot
Match: sp|Q9FLC6|ATL73_ARATH (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.3e-15
Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 0


Query: 75  GLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGEFEEGELIKHLPNCNHSFHSPCID 134
           G++   ++++P+  +    + ++     TEC +CLG+F EGE ++ LP CNH FH  CID
Sbjct: 88  GIKKRALKVIPVDSYSPELKMKA-----TECLICLGDFVEGETVRVLPKCNHGFHVKCID 147

Query: 135 AWFRNHSSCPLCRLQVLSFSTPDSSS 161
            W  +HSSCP CR  +L   TP + S
Sbjct: 148 TWLLSHSSCPTCRQSLLEHQTPANGS 168

[Close]

BLAST of CsGy6G016280 vs. TrEMBL
Match: tr|A0A0A0KCA5|A0A0A0KCA5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G303210 PE=4 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 1.1e-96
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0


Query: 33  LLLSNYRLLKQLCRVLHGLFTGRPTVQFEENPNNPSLQIHGHGLETSMIRLLPISQFKKN 92
           LLLSNYRLLKQLCRVLHGLFTGRPTVQFEENPNNPSLQIHGHGLETSMIRLLPISQFKKN
Sbjct: 33  LLLSNYRLLKQLCRVLHGLFTGRPTVQFEENPNNPSLQIHGHGLETSMIRLLPISQFKKN 92

Query: 93  EESESTTSFNTECAVCLGEFEEGELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLS 152
           EESESTTSFNTECAVCLGEFEEGELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLS
Sbjct: 93  EESESTTSFNTECAVCLGEFEEGELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLS 152

Query: 153 FSTPDSSSSAMLETLGRENVLRERVAHYQTLRAQILQHPEFRRDASIQGTDQRNR 208
           FSTPDSSSSAMLETLGRENVLRERVAHYQTLRAQILQHPEFRRDASIQGTDQRNR
Sbjct: 153 FSTPDSSSSAMLETLGRENVLRERVAHYQTLRAQILQHPEFRRDASIQGTDQRNR 207

[Close]

BLAST of CsGy6G016280 vs. TrEMBL
Match: tr|A0A1S3BIX6|A0A1S3BIX6_CUCME (RING-H2 finger protein ATL66-like OS=Cucumis melo OX=3656 GN=LOC103490579 PE=4 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 3.0e-86
Identity = 160/174 (91.95%), Postives = 166/174 (95.40%), Query Frame = 0


Query: 33  LLLSNYRLLKQLCRVLHGLFTGRPTVQFEENPNNPSLQIHGHGLETSMIRLLPISQFKKN 92
           LLLSNYRLLKQLCRVLH LF+GRP VQFEENPNNPSLQIH HGLETSMIRLLPISQFKK 
Sbjct: 33  LLLSNYRLLKQLCRVLHELFSGRPAVQFEENPNNPSLQIHAHGLETSMIRLLPISQFKKK 92

Query: 93  EESESTTSFNTECAVCLGEFEEGELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLS 152
           EESESTTSFNTECAVCLGEFEEGELIK+LPNCNHSFHS CIDAWFR+HSSCPLCRLQV S
Sbjct: 93  EESESTTSFNTECAVCLGEFEEGELIKNLPNCNHSFHSSCIDAWFRDHSSCPLCRLQVWS 152

Query: 153 FSTPDSSSSAMLETLGRENVLRERVAHYQTLRAQILQHPEFRRDASIQGTDQRN 207
           FSTPD SSSAMLETLGREN+LRERVAHYQTLRAQILQHPEFRRD SIQG+DQR+
Sbjct: 153 FSTPD-SSSAMLETLGRENILRERVAHYQTLRAQILQHPEFRRDESIQGSDQRD 205

[Close]

BLAST of CsGy6G016280 vs. TrEMBL
Match: tr|A0A2C9W1B6|A0A2C9W1B6_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_04G030200 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.9e-35
Identity = 83/163 (50.92%), Postives = 106/163 (65.03%), Query Frame = 0


Query: 33  LLLSNYRLLKQLCRVLHGLFTGRPTVQF----EENPNNPSLQIHGHGLETSMIRLLPISQ 92
           +L S YR+L++LC  L+     R   Q     + N  + SLQ + HGLE++++R LPISQ
Sbjct: 35  VLFSYYRMLRRLCCTLNTQTLPRNRAQMSRINQNNLEDSSLQNYSHGLESNIMRSLPISQ 94

Query: 93  FKKNEESESTTSFNTECAVCLGEFEEGELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRL 152
           FKK EESE++   N ECAVCLGEFEEGE +KHLPNC H FH  CID WF+ HS+CPLCR 
Sbjct: 95  FKKEEESEAS---NRECAVCLGEFEEGEWLKHLPNCAHVFHVACIDTWFQTHSNCPLCRS 154

Query: 153 QVLSFSTPDS-SSSAMLETLGRENVLRERVAHYQTLRAQILQH 191
            V       S S   +L TL RE+   ER  HYQ LR++IL++
Sbjct: 155 HVYDLCHEYSISMDTLLHTLRREDFFNERAEHYQNLRSEILRN 194

[Close]

BLAST of CsGy6G016280 vs. TrEMBL
Match: tr|A0A067L6V3|A0A067L6V3_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_05653 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 4.1e-35
Identity = 80/163 (49.08%), Postives = 106/163 (65.03%), Query Frame = 0


Query: 33  LLLSNYRLLKQLCRVLHGLFTGRPTVQFEE-NPNNPSLQIHGHGLETSMIRLLPISQFKK 92
           ++ S Y+++K+LC  L+ L   R  VQ    +  +PSLQ   HGLE+ ++  LPISQFKK
Sbjct: 40  VIFSYYKIIKRLCCALNTLTFSRNHVQTRHLSVEDPSLQYQSHGLESIVMDSLPISQFKK 99

Query: 93  NEESESTTSFNTECAVCLGEFEEGELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQVL 152
            +E E T   N+ECAVCLGEFEEGE +KHLPNC H FH  CID WF+ HSSCPLCR  V 
Sbjct: 100 EKEQEETRQSNSECAVCLGEFEEGEWLKHLPNCAHVFHVACIDTWFQTHSSCPLCRSLVY 159

Query: 153 SFSTPDSSSSAMLETLGRENVLRERVAHYQTLRAQILQHPEFR 195
             S    S + ++E+L RE+   +R  +YQ LR+QI ++   R
Sbjct: 160 ENSI---SINTLIESLQREDFFHQRAEYYQILRSQIFRNSATR 199

[Close]

BLAST of CsGy6G016280 vs. TrEMBL
Match: tr|A0A218XVX5|A0A218XVX5_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr024070 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.7e-34
Identity = 78/165 (47.27%), Postives = 111/165 (67.27%), Query Frame = 0


Query: 33  LLLSNYRLLKQLCRVLHGLFTGRPTVQ----FEENPNNPSLQIHGHGLETSMIRLLPISQ 92
           LL   Y +++++C  L G+ T R   Q     E NP++PSLQ H  GL+ S ++ LPI +
Sbjct: 35  LLFCYYTIIRKICSEL-GIGTLRNQAQRHLLNEANPDDPSLQFHSRGLDDSTVQSLPIIR 94

Query: 93  FKKNEESESTTSFNTECAVCLGEFEEGELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRL 152
           F K+E+ + +   NT+CAVCLGEFE+GE +K LP C+HSFH  CI+ WF +HS+CPLCR 
Sbjct: 95  FLKDEKEKYSILKNTDCAVCLGEFEDGEQLKFLPKCSHSFHVSCINMWFMSHSNCPLCRT 154

Query: 153 QVLSFSTPDSSSSAM---LETLGRENVLRERVAHYQTLRAQILQH 191
            V   S  D  S +M   LETL RE++++ER AHYQ L+++IL++
Sbjct: 155 HVFELSMSDECSVSMDSLLETLRREDLVQERTAHYQNLQSEILRN 198

The following BLAST results are available for this feature:

BLAST of CsGy6G016280 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47355.1	1.7e-96	100.00	hypothetical protein Csa_6G303210 [Cucumis sativus]	[more]
XP_008448367.1	4.6e-86	91.95	PREDICTED: RING-H2 finger protein ATL66-like [Cucumis melo]	[more]
XP_023512261.1	4.2e-71	77.40	RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo]	[more]
XP_021643455.1	3.9e-37	54.27	RING-H2 finger protein ATL16-like [Hevea brasiliensis]	[more]
XP_021609310.1	2.8e-35	50.92	RING-H2 finger protein ATL1-like [Manihot esculenta] >OAY51755.1 hypothetical pr...	[more]

BLAST of CsGy6G016280 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G17600.1	3.4e-19	34.88	RING/U-box superfamily protein	[more]
AT3G16720.1	3.8e-18	42.45	TOXICOS EN LEVADURA 2	[more]
AT5G43420.1	1.4e-17	35.82	RING/U-box superfamily protein	[more]
AT5G05280.1	7.2e-17	39.53	RING/U-box superfamily protein	[more]
AT1G72220.1	1.2e-16	40.00	RING/U-box superfamily protein	[more]

BLAST of CsGy6G016280 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LF64\|ATL52_ARATH	6.2e-18	34.88	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]
sp\|Q8L9T5\|ATL2_ARATH	6.9e-17	42.45	RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2	[more]
sp\|Q9LSW9\|ATL16_ARATH	2.6e-16	35.82	RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1	[more]
sp\|Q8LF65\|ATL17_ARATH	5.8e-16	48.84	RING-H2 finger protein ATL17 OS=Arabidopsis thaliana OX=3702 GN=ATL17 PE=2 SV=2	[more]
sp\|Q9FLC6\|ATL73_ARATH	1.3e-15	39.53	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1	[more]

BLAST of CsGy6G016280 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KCA5\|A0A0A0KCA5_CUCSA	1.1e-96	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G303210 PE=4 SV=1	[more]
tr\|A0A1S3BIX6\|A0A1S3BIX6_CUCME	3.0e-86	91.95	RING-H2 finger protein ATL66-like OS=Cucumis melo OX=3656 GN=LOC103490579 PE=4 S...	[more]
tr\|A0A2C9W1B6\|A0A2C9W1B6_MANES	1.9e-35	50.92	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_04G030200 PE=4 SV=...	[more]
tr\|A0A067L6V3\|A0A067L6V3_JATCU	4.1e-35	49.08	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_05653 PE=4 SV=1	[more]
tr\|A0A218XVX5\|A0A218XVX5_PUNGR	2.7e-34	47.27	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr024070 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G016280.1	CsGy6G016280.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 105..146 e-value: 2.6E-6 score: 37.0
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 104..147 e-value: 7.7E-13 score: 48.4
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 105..147 score: 12.43
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 65..152 e-value: 8.0E-21 score: 75.5
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 4..159
None	No IPR available	PANTHER	PTHR14155:SF292	E3 UBIQUITIN-PROTEIN LIGASE RING1-RELATED	coord: 4..159
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 104..147 e-value: 3.32109E-16 score: 68.4825
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 104..152

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G016280	Cla013278	Watermelon (97103) v1	cgybwmB491
CsGy6G016280	Csa6G303210	Cucumber (Chinese Long) v2	cgybcuB281
CsGy6G016280	MELO3C013674	Melon (DHL92) v3.5.1	cgybmeB372
CsGy6G016280	ClCG02G020470	Watermelon (Charleston Gray)	cgybwcgB416
CsGy6G016280	CSPI06G16710	Wild cucumber (PI 183967)	cgybcpiB287
CsGy6G016280	CmaCh20G004320	Cucurbita maxima (Rimu)	cgybcmaB801
CsGy6G016280	CmoCh20G004700	Cucurbita moschata (Rifu)	cgybcmoB779
CsGy6G016280	Lsi10G013440	Bottle gourd (USVL1VR-Ls)	cgyblsiB373
CsGy6G016280	MELO3C013674.2	Melon (DHL92) v3.6.1	cgybmedB373
CsGy6G016280	CsaV3_6G022150	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G016280	Cla97C02G046440	Watermelon (97103) v2	cgybwmbB422
CsGy6G016280	Bhi10G000535	Wax gourd	cgybwgoB570
CsGy6G016280	Carg03292	Silver-seed gourd	carcgybB0348

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G016280	Cucumber (Gy14) v2	cgybcgybB131
CsGy6G016280	Cucurbita maxima (Rimu)	cgybcmaB727
CsGy6G016280	Cucurbita maxima (Rimu)	cgybcmaB822
CsGy6G016280	Cucurbita moschata (Rifu)	cgybcmoB802
CsGy6G016280	Cucurbita pepo (Zucchini)	cgybcpeB757
CsGy6G016280	Cucurbita pepo (Zucchini)	cgybcpeB809
CsGy6G016280	Cucurbita pepo (Zucchini)	cgybcpeB817
CsGy6G016280	Cucurbita pepo (Zucchini)	cgybcpeB848
CsGy6G016280	Cucumber (Chinese Long) v2	cgybcuB246
CsGy6G016280	Cucumber (Chinese Long) v2	cgybcuB271
CsGy6G016280	Bottle gourd (USVL1VR-Ls)	cgyblsiB397
CsGy6G016280	Bottle gourd (USVL1VR-Ls)	cgyblsiB405
CsGy6G016280	Bottle gourd (USVL1VR-Ls)	cgyblsiB406
CsGy6G016280	Bottle gourd (USVL1VR-Ls)	cgyblsiB419
CsGy6G016280	Melon (DHL92) v3.6.1	cgybmedB395
CsGy6G016280	Melon (DHL92) v3.6.1	cgybmedB441
CsGy6G016280	Watermelon (Charleston Gray)	cgybwcgB422
CsGy6G016280	Watermelon (Charleston Gray)	cgybwcgB430
CsGy6G016280	Watermelon (97103) v1	cgybwmB477
CsGy6G016280	Wild cucumber (PI 183967)	cgybcpiB253
CsGy6G016280	Wild cucumber (PI 183967)	cgybcpiB278
CsGy6G016280	Silver-seed gourd	carcgybB0318
CsGy6G016280	Silver-seed gourd	carcgybB0454
CsGy6G016280	Cucumber (Chinese Long) v3	cgybcucB255
CsGy6G016280	Cucumber (Chinese Long) v3	cgybcucB286
CsGy6G016280	Watermelon (97103) v2	cgybwmbB428
CsGy6G016280	Watermelon (97103) v2	cgybwmbB430
CsGy6G016280	Watermelon (97103) v2	cgybwmbB436