CsGy6G015360 (gene) Cucumber (Gy14) v2

NameCsGy6G015360
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionrRNA adenine N(6)-methyltransferase
LocationChr6 : 13978116 .. 13984921 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACGCGCGTAAACACTGTAAATTCCGATGGAGAAACAATCAGAGAAAGAAAGAAATGGTTCTTCAAGCGGAACAGGTAAGCTCAGCGATGTCGTGTCGAACACTGCTTTCAAAGCAAAATTCAGCGCAACCTTATGCTAAATGCGAACTCAACCATCAATCTCTTAAATTTCTCAATCATGACACTGTCGTTTCCAATAAAAATAAGATCATCCACATATAAGCAAACAATGACTAATTTTCTTCCATCTCCAATTTTTGTAAAAAGAGTATGCTCATATGGACATTTCTTAAATCCCTCCTTAGTAAAATAAGCATTTATACGACTGTATCACGCTCCTGGAGCTTGTTTTAGTCTGTATAATGCCTTTTTGAGTCTATAAACTTTGTGTTCATCTTTCACCTTCACATAACCAGGAGGTTGATCAACAAATACCTTTTCTTGGAGTCACCATGTAAAATTGTTGATTTCACATCCAACTGGAAAATATGCCATGGATTTTGGGCTGCCAAAGAGACTATCAATCTGATTGTATCATGTCTTGCAACTGGAGCAAAGACTTCTTTGTAATCGACACCAAATTCCTGCTTATACCCCTTTGCAACTAAGCGAGCCTTGAACTTGTCGACTTCGCTATTCTCTTTCAATTTTGTCTTGTACACCCACTTGACCCCAATTGTTTTGTGACCTTTAGGAAGATCAATCAGCTCCCATGTGCTGTTGCGTTCAATGGCTTTGATTTCTTCGTCCATCGATTTTTGCCATTTTGGATCCTTAGTAGCTTCTTCAAAAACTGTAGGATCACGATCGGAAAAAAGAGAAAAATATGTAAGCTGCGGGTCATCAGATTCATCAATTCCTGTCACCTCATAGTCTGTCATCCACGCTGGTTTTCTTCTAGTACGCTGAGGTCTTTCTTCGTTGTCTGAAGTTGTTGACAAGCTTGGTGGATTAACCGGACCATTTGTTGAACCGTGATCATCACGTTCTGCTGGTTTTTGTGACTCCTCATCATCAATTCCATCAAAGTTTGTGGACACTTGTTTTTCAGCAATCTTTTTGTTCCATTGCCAAAATTCTCTTCATCAAAAACTACATCACTGCTAATTATAATTTTCTTAGTGCAAGGATTGTAAAGCTTGTAAGCCTTTGATTGATCACTTACACCAAGAAAGACACACTTTTCTCCTTTGTCATCTAGCTTTGTTCGCTTCTGATTTGGAATATGGGCATATGCAATACACCCAAATTTTTTGAAATGATCTACCTTCGGCCTCCTTCCGCTCCATGCTTCCTACGGAGTCATATTTCGTGTGGGACTTCTATTCAATATATGGATGCTCCAATTGACTGCTTCAGACCAGAATGTTCTTGGAATACCACTTTTCATCAAAAGGCTTCTCACCATATTGAGAAGAGTGCGATTTTTTCGCTCATAGACACCGTTTTGTTGCGGCGTGTAGGCTGTTAACTGTCTTTTGATTCCATTATTCTTACAGAAAGTTTCAAATTCCCGTGAGATATACTCTCCACCACGATCTATGTGAAGAATTTTGATTGAGCTGCCCATTTCTTTCTCAACTTGCACTTTATAGCTCCTAAAAGCAATAAAAGCTTCAGATTTGTCCTGCAAAAAATGTACCCAATTTTTTCGACTATAATCATCAACGAAGGTGATTATATATCGTTTTTCTCCATTTGAAGAGGGGTTTATCGGGCCGCACAAATCTGAATGCACCAACTCCAATGATCTCTTTGCTCTCCATGACTTTCCTGTTGGAAAAGGATCTCGATGTTGCTTGCTGACTATTCACTCTTCACAAACTTCAGCAGGAACTTCAATTTGAGGAAGCCCGGTTACCATATCTTTCTGCTGTAGTGTTTTCAATCCACAAAAGTTCAAGTGACCATAGCGAAAATGCCATAGCCAAAAGACATCCTTCAATTTCACTGAGAAGCAAGAATGAGTTGTGTTTTGCAGATAAAGTGGGAACATTCGGTTTGCTGTCATATTCACTTGAGCAATTAAATCCATCTCTCCATCTTGAATTCTAAAGATTCCATCTTTGATAGATAACTCATACCCTTTTTCTAGCAACTGGCCCACACTCAAAAGATTGGTCTTTAAATCTGGAACAAAAAGAACATTAGAAATGGTGTGGATAGAGTTCCCTTTGGTTTAGATAGTCACTTGTCCTTTTTCCAAGACTGAAACTGTGGAGTTATCACCAAATTTGACAGTATTACGGAATGACTCGTCCAGTTCTGAAAAAGCCTTCTTGTCTCCACACATGTGATTGTTGCAACCTGTATCTAAATACCACATGTTTTGTTGAGTTGCTTCATTTACATGGCACACCATTAAAAAAGATATTTCATCTTCTTTCTCTGCAAAGTGAGTTCTTTCTCCATTCTGCCAATTCAAATTTGTTCTACATTCTGATTGATAATGGTCATACTTATAGCATCGATGGCATTCAATATGTGACTTGTCTGTTGGCTTGTAAGTTGTTGAGTGATGACCTCCTCTTTTCTTTCCTCTTCCTCTTCCTCTTCCTTGAAATTGATTCTCTTCGTACTGATGGTGTCTTTGTTGGCTGCCACGATCGTTGCTTCCTCTGCCTTTAGATCTCCATCTTCCTCGTCCTCTATCTCTTTTGAGTGTTGACTGATTTTCAGTTGAAGCCTTCAATACTTGCTCCGCTTTTTCTTACTTGGTAACTTTTTGCTCATGAATCAGTAAAGAGCTCTGCAACTCATCAATTGAAAGATTATCAATATCTTTGGACTCTTCTATGGAACATACAACAAAATTAAACTTCGGTGTCATTGATCGAAGAATCTTTTCCACAATGGTGACGTCCTCTATTTTTTCTCCATGAATCCGCATTTTGTTGGCGATTGACATTGTTCTTGCAAAGAAATCAATCACCGACTCGCTCATCTTCATTCGTAGAGTCTCGAATTTGGTTCGAAGACCTTGAAGCTGCACCCTCTTTACCTTCACGTTCCCTTGATGCTTCTTTTTCATATTGTCCCAAATCTATTTGGAGGTTTCTTTGCAAAGAATAGTTTCCAAAGTTGCTCGATCAATTGCTTGGAAAAGATAGTTTTTTGCTTTAAGGTCCTTCAACTTCAATGCTTCCAATTATGACTTTTGTGTATCAGACAATATTGTTACAGGTGTAGGCTCTGGTACTTCAGATTCAACAACCTGCCAATATTCCTTAGACCTCAAGAAATTTTCCATTAGCATGCTCCAATGGTCTAGTGACCATCAAAGCGAGGAATTGCTGGTTGGACAAAGTTATCAGTTGCCATGATAATACACTGTTGCTGCAAGACAAATCAAAGAAGCATTCGCTCACTCACTCCTTTTTTTACTCACCAACCCAACTCTCAGATCACTCACCAACTCAAAGGCTCTGATACCATTGTTAATTAAAATGAGCAGAAAATATTCGACAATTTTATTAATCAATCTAATGGCCTATTTATAGGCAATACAAATACGTTCAAATAATAAAGGAGGAACAAATCAGAAAATGGAAAACCTAAAACAAACTCTCCTATAAACTAGGTACTAGTGTGTTAGTGGTGATGACACATACTTACCCTACTAACACGTTAGGCCAGATTGGGACAATGATATTTTCAACAGGCCCAAGTTAACACACTCAAGCGTTCATTCGTAGGAGTTAGAATTGAATAAGGAAAAGATTGCTCAGAAAAAAGAACTAGATTTGAAAGCAAAATTGTAATCAATTTATTCTCTTTTTCAAATGTCGATCTCTTCTCCTATGCATGGCTCGCATTGTTGTCCAAGTAATTTCTAGCAAAAGATGTCGTCGTTGATGAAAAACCATACCTTGCTGTGAAATTAGAGTTTAAGAATTGGCTCCTTCAAGGTGAACCGAATAATGTGTTTTTGGAGTTTGATCCAATCTCCTGATCAAAAATTTGAGGAATTCGATTCCAAAATGGCGACAAGAATTGGATTGGTGCTTCCTTCTAGCCGGTGACGTTTTGTGACCGGCAACGCCAAGAAGCTCGAGGAAGTTTGAGCAATATTGGGAAATTCAATTCCTTTTCGTTCTCTCAAGCTTGACTTGACGAAGTTGCAAGGCGAGCCAGAAGATATATCGAAAGAGAAGCTCGGTTGGCTGCTATTCAGGTTAATGGGTCGGTTCTGGTGGAAGATACATGCCTCTGCTTCAATGCTTTGAAGGGTCTTCCTAGGTTATTGCTTGGGGCTGGAGAAATTGGGGAAACACAGAAACAAGCTAGTACTTCTGTCGCTGGTGGACTACTCCATTTGTATCTTGTTATGCTGCTACCATTAGAGTTGGAGAAAGAGTTAATCCATATGATTATCATTCAACTGTAAGAGCTCTCAATTCCAAAGGCCGCGTGCCTAGAAAATCTCTCGGCCAGGTTCGTTCCCCAACACCTTGTTTATATGATTATCTTCTAGTTGTTTAAGTAATGTATGATGCTAATTTGTCATAGATGCGTTTGAGGGGAAAGTTTGGGTAAATTGGGATGCGTTTATGAGAATCAGTAATTTCCCTTTTGTAAATTCTAAACCGTGTGGAAGTCCCAATATGATTCATGTAGAGATAGAGGGAGACGATATACACAATATATTCTTCAATTATATGTTAGAATACAGGAGGTGGCCTTTCTTCTGTATAGCACTTGAGATTTGAGAATACACCACGTATCTGGATAATTTTAGAGAGATTTATTCTTTGTATATTGATGTTTTTCTTCACATATCATCAGGAAATGATTATTTTGATAACAGGTATTGAGGTTTATCTCTTGCATTATGGTCAGCTCACACTACACTCTATTTGTGATTATTGAAAAGTTTGTTTGAACAAAGTTTGGAGGGAAATTATTGAATCTCTCATTTTTTAGATTGATAAGGGGGATTTAAAATAACTTTTGGATGAATTTTACATCTCAAATTGAGAAGAAAATCTAAATTAAGAAAACCCAAATATTATGAAAATGGCAACTCAAAAACCCAAATATTATGCACCTATTTTCAAAATGGCATGTTGCCATGATCTGAAGAGAGATAACTTAATATTGAGTTAAAACTTCGATTTGACCTAAAGTATGCAATAGGTCTCTTATTTTGTGATAAAACTGCCCCAAGACCGAACCCTGAAGCGTCCGTTTCTATTTCAAATGGTAATTCAAAATCCGCTAGGGCTAGGACTGGTAATGTAACCATCGCTTTCTTCAGTAATTCAAATGCTTGGGTCGCTTCTTCTGTCGATCGGAAGCTGTTTTTCTTTGTCAACCGAGTTAGGGGAGTGGCGATAGCACCATAATTTGCCACAAAACGTCTGTAGTAACCCGTTAATCCGAAGAACCCTCGCAATTCTCTTACATTTTTCGGAATTGGCCATTCTAGCATAGTCCTAATCTTCTCTTGATCAACTTCTACCCCTTTTTCCGACACCCAATGGCCCAAGTACTCAATCCGGTCTTTGGCAAACTGACACTTCTTTTGATTCGCGAATAGGCTATGTTGTCTCAGTAATTGAAACACCAAGGTGAGATGTTCTAAATGGGTTGATGTGTCTTTGCTGTAAACCAGAATGTCATCAAAAAATACCAGCAAGAATTTACGCAAGTAAGGTCTAAACACCTGATTCATTAGAGCTTGGAATGTCGCCGGAGCGTTCGTGAGGCCGAACGACATAACAAGAAACTCGTAATGACCCTCATGTGTTCTGAAGGCTGTCTTCCTTATGTCTTCATCTCGTACCCAGATTTGATGGTAACCCGATTTCAAATCTATCTTGGAGAAAATACTCGAGCCATTCAACTCATCCAACAGCTCATCAATCATTGGAATTGGGAATTTTTCAGGTACCGTAGCGCGATTCAAAGCCCTATAATCGACGCAAAATCTCCAACCGCCGTCCTTTTTTACTAGAAAAGGGGCTGATGCTCGGTCTTATGATACTCGAAGTCAACATCTCATTCACCAGCGTTTCGATCTCATTTTTCTGTGCGTGTGGGTAACGGTATGGTCTTACATTAATGGGGTCGGTACCTTCCTTCAGTTGGATTCTGTGATCAATCTGTCGCATTGGAGGCAGCCCGTCTGGCATAACGAAAACATCTTTGAATTCCTTTTGGAGTTGTTCTATTTCAGGTTGTATTTCTTCTATTGATTCTGTTGCCATCAACATCCCATAGCTCTGAAGTCAACTAGAAATCCTTGATCATCTGATTGCCATGTTTTAACCAGCATCTTCAAAGATATTTCCATTCTGGTCAGCGAGGGATCTCCTTTCAAGATGACATTAGTGTCCCCGACAATGAATGTCATGGTTAACGCCTTCCAATCAACAGTCATCGCCCCTTGCTTTCGGAGCCACTGCATTCCCAGTACCATATCTAAGTTGCCTAATTCCAGCGGTAAGAAATCCTCAATGATGGTCAGTACTGGCAGCCCAACCATGATGTCCTTGCACATCCCTTGACCCTATACCGCCTTCCCGGATCCCATAATGATGCCGTAGTTGGTCGTTTCCGTTATAGGTAAATTCAATTCGTCTATCAGCTTGAGTGAGATAAAGTTGTGGGTTGCCCCACAATCTACCATGATACCACCGGACTGACTTCAATGGGACCATTCTCGTTTTCCACATCTTCCATCTCTGTATCCTCTAAATCATCCGCTACCAGGTAAAGGCGGAGCTCTTTGTTTTTGCAGCGATGTCCCTTGCTGAAAGGTTCGTCACACCGATAGCAAAGTCCCTTGTCTTGTCGTGCTTGTAA

mRNA sequence

ACGCGCGTAAACACTGTAAATTCCGATGGAGAAACAATCAGAGAAAGAAAGAAATGGTTCTTCAAGCGGAACAGGTCCTTCAACTTCAATGCTTCCAATTATGACTTTTGTGTATCAGACAATATTGTTACAGGTGTAGGCTCTGGTACTTCAGATTCAACAACCTGCCAATATTCCTTAGACCTCAAGAAATTTTCCATTAGCATGCTCCAATGGTCTAGTGACCATCAAAGCGAGGAATTGCTGCTTGACTTGACGAAGTTGCAAGGCGAGCCAGAAGATATATCGAAAGAGAAGCTCGGTTGGCTGCTATTCAGAGTTGGAGAAAGAGTTAATCCATATGATTATCATTCAACTGTAAGAGCTCTCAATTCCAAAGGCCGCGTGCCTAGAAAATCTCTCGGCCAGGTAAAGGCGGAGCTCTTTGTTTTTGCAGCGATGTCCCTTGCTGAAAGGTTCGTCACACCGATAGCAAAGTCCCTTGTCTTGTCGTGCTTGTAA

Coding sequence (CDS)

ACGCGCGTAAACACTGTAAATTCCGATGGAGAAACAATCAGAGAAAGAAAGAAATGGTTCTTCAAGCGGAACAGGTCCTTCAACTTCAATGCTTCCAATTATGACTTTTGTGTATCAGACAATATTGTTACAGGTGTAGGCTCTGGTACTTCAGATTCAACAACCTGCCAATATTCCTTAGACCTCAAGAAATTTTCCATTAGCATGCTCCAATGGTCTAGTGACCATCAAAGCGAGGAATTGCTGCTTGACTTGACGAAGTTGCAAGGCGAGCCAGAAGATATATCGAAAGAGAAGCTCGGTTGGCTGCTATTCAGAGTTGGAGAAAGAGTTAATCCATATGATTATCATTCAACTGTAAGAGCTCTCAATTCCAAAGGCCGCGTGCCTAGAAAATCTCTCGGCCAGGTAAAGGCGGAGCTCTTTGTTTTTGCAGCGATGTCCCTTGCTGAAAGGTTCGTCACACCGATAGCAAAGTCCCTTGTCTTGTCGTGCTTGTAA

Protein sequence

TRVNTVNSDGETIRERKKWFFKRNRSFNFNASNYDFCVSDNIVTGVGSGTSDSTTCQYSLDLKKFSISMLQWSSDHQSEELLLDLTKLQGEPEDISKEKLGWLLFRVGERVNPYDYHSTVRALNSKGRVPRKSLGQVKAELFVFAAMSLAERFVTPIAKSLVLSCL
BLAST of CsGy6G015360 vs. NCBI nr
Match: XP_004133887.1 (PREDICTED: probable dimethyladenosine transferase [Cucumis sativus] >KGN56557.1 hypothetical protein Csa_3G124770 [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 3.8e-06
Identity = 28/31 (90.32%), Postives = 29/31 (93.55%), Query Frame = 0

Query: 106 RVGERVNPYDYHSTVRALNSKGRVPRKSLGQ 137
           RVGE VNP DYHST+RALNSKGRVPRKSLGQ
Sbjct: 51  RVGEGVNPDDYHSTIRALNSKGRVPRKSLGQ 81

BLAST of CsGy6G015360 vs. NCBI nr
Match: XP_008438106.1 (PREDICTED: ribosomal RNA small subunit methyltransferase, chloroplastic [Cucumis melo])

HSP 1 Score: 60.5 bits (145), Expect = 6.4e-06
Identity = 28/31 (90.32%), Postives = 29/31 (93.55%), Query Frame = 0

Query: 106 RVGERVNPYDYHSTVRALNSKGRVPRKSLGQ 137
           RVGE VNP DYHST+RALNSKGRVPRKSLGQ
Sbjct: 51  RVGEGVNPDDYHSTLRALNSKGRVPRKSLGQ 81

BLAST of CsGy6G015360 vs. NCBI nr
Match: XP_022147256.1 (ribosomal RNA small subunit methyltransferase, chloroplastic isoform X2 [Momordica charantia])

HSP 1 Score: 57.0 bits (136), Expect = 7.1e-05
Identity = 26/31 (83.87%), Postives = 28/31 (90.32%), Query Frame = 0

Query: 106 RVGERVNPYDYHSTVRALNSKGRVPRKSLGQ 137
           R G RVNP DYHST+RALNSKGR+PRKSLGQ
Sbjct: 51  RSGGRVNPDDYHSTLRALNSKGRMPRKSLGQ 81

BLAST of CsGy6G015360 vs. NCBI nr
Match: XP_022147255.1 (ribosomal RNA small subunit methyltransferase, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 57.0 bits (136), Expect = 7.1e-05
Identity = 26/31 (83.87%), Postives = 28/31 (90.32%), Query Frame = 0

Query: 106 RVGERVNPYDYHSTVRALNSKGRVPRKSLGQ 137
           R G RVNP DYHST+RALNSKGR+PRKSLGQ
Sbjct: 51  RSGGRVNPDDYHSTLRALNSKGRMPRKSLGQ 81

BLAST of CsGy6G015360 vs. NCBI nr
Match: XP_022974171.1 (ribosomal RNA small subunit methyltransferase, chloroplastic [Cucurbita maxima])

HSP 1 Score: 57.0 bits (136), Expect = 7.1e-05
Identity = 26/31 (83.87%), Postives = 28/31 (90.32%), Query Frame = 0

Query: 106 RVGERVNPYDYHSTVRALNSKGRVPRKSLGQ 137
           R G RVNP DYHST+RALNSKGR+PRKSLGQ
Sbjct: 51  RKGGRVNPDDYHSTLRALNSKGRMPRKSLGQ 81

BLAST of CsGy6G015360 vs. TAIR10
Match: AT1G01860.1 (Ribosomal RNA adenine dimethylase family protein)

HSP 1 Score: 44.3 bits (103), Expect = 8.6e-05
Identity = 18/25 (72.00%), Postives = 23/25 (92.00%), Query Frame = 0

Query: 112 NPYDYHSTVRALNSKGRVPRKSLGQ 137
           +P DYHST+++LNS+GR PRKSLGQ
Sbjct: 53  SPDDYHSTLKSLNSRGRFPRKSLGQ 77

BLAST of CsGy6G015360 vs. TrEMBL
Match: tr|A0A0A0L7J6|A0A0A0L7J6_CUCSA (rRNA adenine N(6)-methyltransferase OS=Cucumis sativus OX=3659 GN=Csa_3G124770 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.5e-06
Identity = 28/31 (90.32%), Postives = 29/31 (93.55%), Query Frame = 0

Query: 106 RVGERVNPYDYHSTVRALNSKGRVPRKSLGQ 137
           RVGE VNP DYHST+RALNSKGRVPRKSLGQ
Sbjct: 51  RVGEGVNPDDYHSTIRALNSKGRVPRKSLGQ 81

BLAST of CsGy6G015360 vs. TrEMBL
Match: tr|A0A1S3AW66|A0A1S3AW66_CUCME (rRNA adenine N(6)-methyltransferase OS=Cucumis melo OX=3656 GN=LOC103483311 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.2e-06
Identity = 28/31 (90.32%), Postives = 29/31 (93.55%), Query Frame = 0

Query: 106 RVGERVNPYDYHSTVRALNSKGRVPRKSLGQ 137
           RVGE VNP DYHST+RALNSKGRVPRKSLGQ
Sbjct: 51  RVGEGVNPDDYHSTLRALNSKGRVPRKSLGQ 81

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004133887.13.8e-0690.32PREDICTED: probable dimethyladenosine transferase [Cucumis sativus] >KGN56557.1 ... [more]
XP_008438106.16.4e-0690.32PREDICTED: ribosomal RNA small subunit methyltransferase, chloroplastic [Cucumis... [more]
XP_022147256.17.1e-0583.87ribosomal RNA small subunit methyltransferase, chloroplastic isoform X2 [Momordi... [more]
XP_022147255.17.1e-0583.87ribosomal RNA small subunit methyltransferase, chloroplastic isoform X1 [Momordi... [more]
XP_022974171.17.1e-0583.87ribosomal RNA small subunit methyltransferase, chloroplastic [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT1G01860.18.6e-0572.00Ribosomal RNA adenine dimethylase family protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0L7J6|A0A0A0L7J6_CUCSA2.5e-0690.32rRNA adenine N(6)-methyltransferase OS=Cucumis sativus OX=3659 GN=Csa_3G124770 P... [more]
tr|A0A1S3AW66|A0A1S3AW66_CUCME4.2e-0690.32rRNA adenine N(6)-methyltransferase OS=Cucumis melo OX=3656 GN=LOC103483311 PE=3... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G015360.1CsGy6G015360.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None